trnae-cuc (LOC106605367)


Basic Information

Item Value
gene id trnae-cuc
gene name LOC106605367
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30897026 ~ 30899564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnae-cuc
tccctggtggtctagtggttaggattcggcgctctcaccgccgcggcccgggttcgattcccggtcagggaa
>TU151689
GGCTGCCCATCAAGGTAGCGTTTCGACGTTTGCCTTCCATTTTTCCAGTTTGCGTACACAGCAGGATTATGAAGGATGCTGAAAATACAAGGTCAATATGCGGCAAGGATTCGGTTCTGAGATGTAAAGAAAATTCTTTACCTGGGGCCAAGTACCGGTCAGTGAGGTGGTACAAGCTGGTTGAGGAGCCCTCTAATAAGGAGTCCGGACTATTGATGAAGAGGCTATCACCTAACAGCACCACGCAATGGTACGCAGGCCTGGAGCGTAAAGTGGAACTTTTGGCTGATCATTCTTTTGATATCTTCCTGCTCAATGTAACAGCTGTTGATAGTGGGAGGTACAAGTGTCTCCTGGCAGCACCTGTAGGAGAGCAGAACCAGGAGGGGCAGGTTCACCTCAGTGTTCTATTCTCATTCTGTGCTTGTTTTGGTATGTAAACAAACTGTATACTGCATGTGGATGTTTTAAATTGGACCCCCAGAGAGTTCCTCTGTGCTGATATATACTCTTTTAAAGTTTCCAGTGGTGCTCAAGGATTTGTGTATTATTGTTTCATTTGCAGGTTGCCTTTACAATAAGTCCACAGACCAATCAGAAAGCAGCAGAAAGCAGTCCTAGTTCTTTCCATTGTGGGGCTTGTGGCAGCATTGCTAAGCTTTGTTACTTTTAAGTTCCAAGCGTCGACATGAGCTATACAACTggtccctggtggtctagtggttaggattcggcgctctcaccgccgcggcccgggttcgattcccggtcagggaacatACTTTTTTTCTTTGCTCTGAACAGATATTTCTGTACTAACAGTTTTCACCAATGTTCTCTTTATAATACtatgataatgttatatcagtgtaggctgctgaggggaggacggctgataataatgtctggaatggcatcaaactatgtgtttgataacattccactgattccgcttccagccattatcacgagcacctcctcccaaatttattttattttactaggcaagttagttaagaacaaattcttattttcagtgacggcctaggaacagtgggttaactgtcagttcaggggcagaacgacag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnae-cuc False 72 mRNA 0.55 1 30897337 30897408
TU151689 True 1088 TUCP 0.49 2 30897026 30899564

Neighbor

gene id symbol gene type direction distance location
c2h8orf37 cssa05h8orf37 coding downstream 997 30889693 ~ 30896340 (-)
trnas-aga-2 NA coding downstream 1113 30896143 ~ 30896224 (-)
trnas-aga NA coding downstream 2375 30894881 ~ 30894962 (-)
nagpa LOC106605373 coding downstream 98546 30779459 ~ 30798791 (-)
LOC110486727 tp53inp1 coding downstream 123934 30761285 ~ 30773403 (-)
trnas-aga-3 NA coding upstream 14069 30911477 ~ 30911558 (-)
trnas-aga-4 NA coding upstream 16124 30913532 ~ 30913613 (-)
trnas-aga-5 NA coding upstream 39128 30936536 ~ 30936617 (-)
trnas-aga-6 NA coding upstream 67967 30965375 ~ 30965456 (-)
trnas-aga-7 NA coding upstream 72543 30969951 ~ 30970032 (-)
G131663 NA non-coding downstream 81475 30814673 ~ 30815862 (-)
G131661 NA non-coding downstream 86610 30810324 ~ 30810727 (-)
G131630 LOC106605377 non-coding downstream 166036 30730724 ~ 30731301 (-)
G131629 NA non-coding downstream 167690 30729432 ~ 30729647 (-)
G131628 LOC106605377 non-coding downstream 168363 30728577 ~ 30728974 (-)
G131712 NA non-coding upstream 17930 30915338 ~ 30918439 (-)
G131723 NA non-coding upstream 203571 31100979 ~ 31101745 (-)
G132020 NA non-coding upstream 254183 31151591 ~ 31175420 (-)
LOC110486852 LOC106605360 non-coding upstream 297958 31192419 ~ 31196292 (-)
G132066 NA non-coding upstream 301996 31199404 ~ 31202388 (-)
LOC110486376 LOC106605451 other downstream 1018769 29859575 ~ 29878744 (-)
LOC110534614 LOC106605399 other downstream 2419506 28475823 ~ 28533709 (-)
G129582 NA other downstream 2586605 28310319 ~ 28310732 (-)
LOC110485663 LOC106579570 other downstream 2747351 27933389 ~ 28149986 (-)
LOC110486868 LOC106605361 other upstream 299665 31196917 ~ 31199241 (-)
G132197 NA other upstream 638639 31536047 ~ 31543009 (-)
LOC110486999 prdm1 other upstream 737912 31631886 ~ 31648795 (-)
LOC110514821 NA other upstream 1841421 32738829 ~ 32756992 (-)

Expression


Co-expression Network