XLOC_002060 (ppp3ccb)


Basic Information

Item Value
gene id XLOC_002060
gene name ppp3ccb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20180163 ~ 20234383 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003993
ATCGCTACTCCCTCAGAGAAATTGACAGCAGCTGGGTCGCCTGTGTGAGCAAACCCGAAGGACAGACACGGCAGAAAATAAAACTCTGCCGTTGCAGTGGGCTCCCCCTTCCCCTTTCCCCCACCGTTTGAGCGAACATATCAGTAAAGCGACCCGGACGAGCTCTCTGACTCCGTTTCCCCGCTTTCACAGCGGAGCGGTCAGGACTTTTGTCAGTAGCTTAGCCGAGCTAGCGGGCTAACACGACTAGCTGGGTTCAGCTACAACAAGGAATTACAAATATTCCACCGAGAAACACTGAAGAATGTCGGGGAAGGATCAGAATAAACAATCCACCACCGAACGGCTCGTGAAAGCGGTGCCGTACCCTCCCACAACGCGGCTCACCATGAAAGAGCTGTACGAGGACGGCAAGCCCAAGGTGGAGCTTTTGAAGAGCCACCTGGTGAAAGAGGGCCGCCTGGAGGAGGACGTGGCCCTACGCATCATCAACGATGGAGCCAACATCCTCCGCCACGAGAAGTGCATGCTGGAAGTCGAGGCGCCCATCACAGTGTGCGGAGATGTCCACGGGCAGTTCTTCGACCTGATGAAGCTCTTCGAGGTGGGGGGTTCCCCGCACAACACACGCTATCTATTTTTGGGAGACTACGTGGATCGAGGCTATTTCAGTATTGAGTGTGTGCTCTATCTGTGGGCTCTGAAGATCAACCACCCGACCACCCTCTTCCTCCTCAGAGGCAACCACGAGTGTCGGCATCTTACGGAGTACTTCACCTTTAAACAAGAATGCAAGATTAAGTACACGGAGCGGGTGTATGATGCCTGCATGGAGGCCTTCGACTGCCTTCCTCTGGCCGCTCTGCTCAACCAGCAGTTCCTCTGCGTTCACGGAGGTCTTTCTCCTGAGGTCACCTGCCTCGACGACATCCGGAaaTTAGACAGGTTTAAAGAGCCGCCAGCTTTCGGCCCGATGTGCGACTTGCTGTGGTCTGACCCTGGCGAGGACTACGGCAGCGAAAAGACCTCCGAGCACTTTTGTCACAACAGCGTGAGAGGATGTTCCTATTTCTACAGTTACCCTGCAGTATGTGACTTTCTGACGAATAATAACTTGTTGTCAGTTATAAGAGCACATGAAGCCCAAGATGCAGGGTATCGAATGTACAGAAAAAGTCAGACGACAGGCTTCCCCTCATTAATCACAATCTTCTCTGCACCAAACTACTTAGACGTGTATAACAATAAAGCTGCTGTGTTGAAATACGAGAACAACGTGATGAACATCCGGCAGTTCAATTGCTCTCCTCATCCATACTGGCTGCCCAACTTCATGGATGTCTTCACATGGTCATTGCCCTTCGTTGGGGAGAAAGTAACGGAGATGCTGGTCAACGTGTTGAACATCTGTTCAGATGATGAGCTCATGTCAGAGGGAGACGACACCTGCGAAGTCCGCAAGGAGGTGATCCGAAATAAGATTCGTGCCATTGGCAAGATGGCCAGAGTTTTCTCTGTTCTTAGaGAGGAGAATGAGAGCGTGCTGCAGTTAAAGGGCTTGACCCCCACTGGGATGCTGCCTCTAGGTGTGCTGTCAGGGGGCCGTCAGACCCTCCAGAGCGCCACCGTAGAAGCAGAGGAAGCACGAGCTATCCAAGGCTTCAATCCTCAACACAAGATCCAAAGCTTCGAGGAAGCACGCGGGCTGGACCGGATAAATGAGCGAATGCCTCCACGCAGGGACACCAAGCAGCCAGACGGCACTGCCAACTCCATCAACGCAGCCAATTCCCCCGACAAGAATGGCACCAACACACAGGCGTAGTAACCTAGCAGCTACCTAGCGCTCTCCCTCATCCTTTCCTTTCtgtctcttttgtttttttatttttgttttattttcttctctctgtctgtctctctcttttttcctctcattctctctctttttGGTAGAGGTGATGCCCCCTACATGCTAAACTCTCCTGGACCATTTCGGGGAGAATCGCACAATACCATGAAGAGGGCGTAGTGAAAAAACAAACCAtggttcttatttatttattgattatagATGATAagaaatttaagatctgtaaCGGTGGGATGAAATTAAGATGAATGAATACCTACATGATGGAATATTACATGTGTACATAaaatacagaatatatatatatagacatagcATTGGGGTGGTTGTAAGGTCATCTTAGATTCTgtagtttaaaaa
>TCONS_00003994
TCATTGCCCTTCGTTGGGGAGAAAGTAACGGAGATGCTGGTCAACGTGTTGAACATCTGTTCAGATGATGAGCTCATGTCAGAGGGAGACGACACCTGCGAAGTCCGCAAGGAGGTGATCCGAAATAAGATTCGTGCCATTGGCAAGATGGCCAGAGTTTTCTCTGTTCTTAGaGAGGAGAATGAGAGCGTGCTGCAGTTAAAGGGCTTGACCCCCACTGGGATGCTGCCTCTAGGTGTGCTGTCAGGGGGCCGTCAGACCCTCCAGAGCGCTATCCAAGGCTTCAATCCTCAACACAAGATCCAAAGCTTCGAGGAAGCACGCGGGCTGGACCGGATAAATGAGCGAATGCCTCCACGCAGGGACACCAAGCAGCCAGACGGCACTGCCAACTCCATCAACGCAGCCAATTCCCCCGACAAGAATGGCACCAACACACAGGCGTAGTAACCTAGCAGCTACCTAGCGCTCTCCCTCATCCTTTCCTTTCtgtctcttttgtttttttatttttgtt

Function

symbol description
ppp3ccb Predicted to enable calmodulin binding activity and calmodulin-dependent protein phosphatase activity. Predicted to be involved in calcineurin-mediated signaling. Predicted to be part of calcineurin complex. Predicted to be active in cytoplasm. Is expressed in brain and head. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human PPP3CC (protein phosphatase 3 catalytic subunit gamma).

GO:

id name namespace
GO:0097720 calcineurin-mediated signaling biological_process
GO:0005955 calcineurin complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0033192 calmodulin-dependent protein phosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-1102 Predicted to enable calmodulin binding activity and calmodulin-dependent protein phosphatase activity. Predicted to be involved in calcineurin-mediated signaling. Predicted to be part of calcineurin complex. Predicted to be active in cytoplasm. Is expressed in brain and head. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human PPP3CC (protein phosphatase 3 catalytic subunit gamma).

Ensembl:

ensembl_id ENSDARG00000057456

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003993 False 2233 mRNA 0.50 14 20180163 20234383
TCONS_00003994 True 517 processed_transcript 0.52 5 20221366 20234045

Neighbor

gene id symbol gene type direction distance location
XLOC_002059 xpo7 coding upstream 33619 20070178 ~ 20146544 (+)
XLOC_002058 CABZ01059623.1 coding upstream 454569 19602334 ~ 19725594 (+)
XLOC_002057 zgc:173837 coding upstream 582154 19595009 ~ 19598009 (+)
XLOC_002056 CABZ01059627.3 coding upstream 590430 19583289 ~ 19589733 (+)
XLOC_002055 CABZ01059627.2 coding upstream 604201 19573791 ~ 19575962 (+)
XLOC_002061 TCIM coding downstream 22071 20256454 ~ 20257175 (+)
XLOC_002062 golga7 coding downstream 129626 20364009 ~ 20372269 (+)
XLOC_002063 NA coding downstream 142705 20377088 ~ 20381313 (+)
XLOC_002064 r3hcc1 coding downstream 157700 20392083 ~ 20402161 (+)
XLOC_002065 NA coding downstream 214084 20448467 ~ 20452630 (+)
XLOC_002045 AL928714.1 non-coding upstream 1377728 18798927 ~ 18802435 (+)
XLOC_002043 NA non-coding upstream 1897728 18240550 ~ 18282435 (+)
XLOC_002042 NA non-coding upstream 2108657 18007123 ~ 18071506 (+)
XLOC_002066 NA non-coding downstream 267393 20501776 ~ 20502178 (+)
XLOC_002069 NA non-coding downstream 408952 20643335 ~ 20645459 (+)
XLOC_002070 NA non-coding downstream 430633 20665016 ~ 20667861 (+)

Expression


Co-expression Network