LOC110486768


Basic Information

Item Value
gene id LOC110486768
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31128831 ~ 31130721 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036326.1
ACTGAGGAGACGGAGACCATGCTGACCGAGATGCATGTTGGCCATTTCGGAGTCAAGCCATGATTGCCAAAATCAACAGACACAACTTTTGGCATGGGATTGTCAAGGAAGTGGACAGCTGGGCAAGTGAAACAACAGTTTGTTTATCGATCACATTCTATTATGTCTGAAATTATTTCGATTTCAATGAATGTCATATCAGAGAGAACATAATGTTTAAATGTGTCACCTTGTGCTTAAAGAAAGTACCTGTCTAGCCTGATGGCGACCGATTATTTTACCAATTGGGTGGAGGCAATACCCATTAAGCTCTGCAAATGAAGAGAACGTGCTTAACTCTAAATTCCCTTCTGTAAttcttggaaccaaaaatgtattttcttttgTATGATACCAGACTGGCGAGGCCACCTCCAAGGCGATGATGGACATCATCAAACACCCATGGTTCTCCTGAGGTCACCTTGAGTGACCGAGGTCGTAAACTCTGGAacaaggtagagttattataggtTATATTGTGTCACCAATGGTTTGTGttagtttatttttttacaattagtTTTTGTTTTTCCATGGTACATAATCAGACATTTCAATATCTTCCATTGTTAATAGATATCCCTTTCCTAGCCCCTCATCCAGGTTTGGATGAACAGACAAACCACACCCTCAAGACTGCCATGGGCAAGTCCCTTGACTGGCTCCAAGAATAGTTGGAGGACAACCTGAAGGTAATTATCTTTGCACACAACAGCATCTTCCAGGCCTCCAGAGTACTCACCCTATCGCCTACTGTAAGGATGGGAGTTGCAGCTGTTTACTGAGGTATACAATGCAATTGTATATAAAATGATTGCCTATACTGTAGTCTAAAAAATGTGTGATTGACTTTGTGTTTTTCTATTGCTATTTTTGTACAACGTACTTTGAGGTCACTAATAGATGTGGTGGAAGTTGAACACCTTCAAGGACCACCTTCAGGCACGGACTGAGaaggatgtgtttttttttaccaggtcAACATTATTGTCCGCTGTTAATTTATTTTCAGGTCTTCCAAGAGATACATAAGAGATGCATTTGTAATAATATGATACATATAATATGCATTTATTTAAATTATCAATCAAGGTGAGACTGAACATGGACAAGGCgcaggagaaacagaaggaggGCCACCGGAGGAGAATCAAGGGGACCAAGTGCTTTGACATCTGGGTGAATGACTTGGGTTGGAAGAAGGACGAAAGGAAGGCGAGACCTGGGAAAGCTTGGTGCTTTTTCACTCCTAGCTGGGGTCAACATCCGTTAAGGGACCATCCCTTATAACCCCACTGACATCAAATATTAGACAGgacctaggggGTTCTGCCTAACACTCAGACATGGATCCACCTGATGTTCTCCATTACCAACCACCCTCCAACTTTTCATTACATCATCTACAGCtactgttattgtcatgttgtcattATCTGCTAAGAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106580378

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036326.1 True 1488 mRNA 0.41 3 31128831 31130721

Neighbor

gene id symbol gene type direction distance location
trnas-aga-54 NA coding downstream 29007 31099743 ~ 31099824 (-)
trnas-aga-53 NA coding downstream 31900 31096850 ~ 31096931 (-)
trnas-aga-52 NA coding downstream 34769 31093981 ~ 31094062 (-)
trnas-aga-51 NA coding downstream 49114 31079636 ~ 31079717 (-)
trnas-aga-50 NA coding downstream 51983 31076767 ~ 31076848 (-)
LOC110486775 LOC106605366 coding upstream 20832 31151553 ~ 31153817 (-)
LOC110486829 LOC100136479 coding upstream 42246 31172967 ~ 31175530 (-)
LOC110486838 LOC106605362 coding upstream 49288 31180009 ~ 31191472 (-)
LOC110486852 LOC106605360 coding upstream 61742 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 coding upstream 66196 31196917 ~ 31199241 (-)
G131723 NA non-coding downstream 27086 31100979 ~ 31101745 (-)
G131712 NA non-coding downstream 210392 30915338 ~ 30918439 (-)
G131663 NA non-coding downstream 312969 30814673 ~ 30815862 (-)
G131661 NA non-coding downstream 318104 30810324 ~ 30810727 (-)
G131630 LOC106605377 non-coding downstream 397530 30730724 ~ 30731301 (-)
G132020 NA non-coding upstream 20870 31151591 ~ 31175420 (-)
G132066 NA non-coding upstream 68683 31199404 ~ 31202388 (-)
G132075 NA non-coding upstream 94537 31225258 ~ 31225789 (-)
G132055 NA non-coding upstream 98230 31228951 ~ 31229522 (-)
trnae-cuc LOC106605367 other downstream 229267 30897026 ~ 30899564 (-)
c2h8orf37 cssa05h8orf37 other downstream 232848 30889693 ~ 30896340 (-)
LOC110486376 LOC106605451 other downstream 1250263 29859575 ~ 29878744 (-)
LOC110534614 LOC106605399 other downstream 2651000 28475823 ~ 28533709 (-)
G129582 NA other downstream 2818099 28310319 ~ 28310732 (-)
G132197 NA other upstream 405326 31536047 ~ 31543009 (-)
LOC110486999 prdm1 other upstream 504599 31631886 ~ 31648795 (-)
LOC110514821 NA other upstream 1608108 32738829 ~ 32756992 (-)

Expression


Co-expression Network