LOC110486784


Basic Information

Item Value
gene id LOC110486784
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31136808 ~ 31146454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945604.1
ataaagGCAGATATCGACTCTTCCgcttgagcatgcttttgcggaacagtcgatagcgcgccgaaCCTCgtgctagaaggtcgagggttctaTTATGGGTGTATAAACTGATTTGACTTCTGTTCTGGATCGTCTTCATTGCTGTAGTTCTACAAATATGTTTTTTCAACTCGTCTGCATTCTAGTCTCAGTGTGCGCAGCCTCAGTAGGGGAGAAGCTGGTTTCCTACACATGTCAAGAGGGTACAAACACACTTGAAGCACCATTTGGAGCAGTGGATCCCCAATGTGATCAGAGCTGGACCACTGGCAACAAGTCCATTGCCTACTATGAAAATGGCAAAGGTGAATGCAGTTTTTCATGCGAAGAAGTGATCTCTGGCAGAGTCCTCCTCCGTGAATGTCCCAATGTCACATTAACTATTGGTTGCACCACCAAGGATGGGGTATATGAAGAGACCAGGTTGCGCTTCTCAGCGATAAGCAGACCAGCTGTCTCTATGACAACCACTAACACTGCAAACAATCATATCGCACATTATGGGATAAGTGTCAGCAACCAAGCTTTGCCTCCGAAAACTGCCAGCACTGCCTCTACAAACGTTCAACATGCTCATTATGGATTAATTATATTCTCGGTCCTGTCACCTCTGGTTATTGTGATCAGCGTGATCATCAGCCGTTACTGCAGATCTCGTCCAAATGAAGGTGAGGAGGCTTCATCCATGGTGTTGTAATCCCCCCAAAGGACCTAGATGACATATATCCTGCCAATGAAGAATACTGAATCAGGCATTATCTTAAAATTTAGCCAGTAGGATTATTGACAGGTAATCCTTTCGGGACTGCTGCTCTACCTCTCAAAAGGGAAAGAAAATGAGCTTTTAGACCATGTAGGTTTTTAGTTTCATTGCAGACAAATTAAAATGATGTAGTTCTGTGAAGCACTCAATGTTGTGCACTTTCCTGCATTCTCTTTTAATTCCAATACTCGAATAACCCCCTAAACTTGTTTACCAGTGATGCAGGAGACGTTGGCAGTCTTTTCACCTAAGACAGGAAGGAAAAAAGCCATAGATCTTTTTTGGTGAAAATGTGTTCTTGCTGCTAACATTTGAAACTGCTCTGCATCACAATGCTGGGACATAGCTAGTGTTgtagtattaatgtagtaacAAGTATTTCCAATCTATTtattgctgacagatgtataagtGTAAAATGAGGAAGGTATGGTATTTCTAGGTATTTtaaccaacagtacagtaattgTTACACTGTACATTGCCATTTCTCTCTTACATATTTGTGAAAACTGTTAATATGACAGTTAGCTACAGTAGATGGTAGCGATGCCAAGCAGTAACAGAAAGCACTCAATGTTCATCAGTTCACCTTGGCCTTGGAAGTGATGAAATGAACCAGCAATTGGCGACTTACTCTTCTGAAATCCTAATGCTATTGAGTAAGGTACTCAACCTGTGGGACCAGtgtctatggcaagacttgaaaatggccgtctagccatgatcaacaaccaacttgacagagcttgaagaattttaaaaagaataatgtgcaaatattgtacaatccaggtgtgcaaagctcttaagagacttacccTGAAATCGCTGCCAGAGGTGAAGCTAAcatatacttatgtaaattagatatatctgtatttcatttatttattctaaaaacaggttttaaatttgtcactgtggggtattgtgtgtagatgggtgagagaaaaaatcAGGCtgtcacaacaaaatgtggaataagtcgacAGGTATGAATACTTTAGGCACTATCGATTTTAGAGATGCAGTAACAGAAAGTGCTCAAGGTTAATCGTTCATCTTGGGCTTGGAAGTGATGAAATGAGCTGGCAATTGGAGAGTTACTGGTCTGAAATCCTAATGCTGTTGTGGCATGAGAAAGGTGCTGTGGGACCAGTGTCAAAATTAGCAAGgataaaaatgttaaaagcatTTTATTATTGGTTGATATCACATTTCATGGAGACTTACCAAACATCTGTTATTCTAATTCTTCTTATATTAACTGACAAACTGAATTTGATACACACTAGTATTATTACATGAGCTGCAAATAAGCTCCATTTCTTTTTTAGGTCTGTTGCTTTGCATTTGTATGCATTTGTATTAacaactgctaaccatgtgtatgtgaccaataacatttgatatgATTTAATTCTGttaagattattattattattattattattatgcaaTAATGTGTTGTGTGCTATGATCACACGGGTGTCATGAAAAAATGTCACTGTATGACCCATATCCATG
>XM_036945598.1
aaagGCAGATATCGACTCTTCCgcttgagcatgcttttgcggaacagtcgatagcgcgccgaaCCTCgtgctagaaggtcgagggttctaTTATGGGTGTATAAACTGATTTGACTTCTGTTCTGGATCGTCTTCATTGCTGTAGTTCTACAAATATGTTTTTTCAACTCGTCTGCATTCTAGTCTCCGTATTCTCAGTCTCAGTGTGCGCAGCCTCAGTAGGGGAGAAGCTGGTTTCCTACACATGTCAAGAGGGTACAAACACACTTGAAGCACCATTTGGAGCAGTGGATCCCCAATGTGATCAGAGCTGGACCACTGGCAACAAGTCCATTGCCTACTATGAAAATGGCAAAGGTGAATGCAGTTTTTCATGCGAAGAAGTGATCTCTGGCAGAGTCCTCCTCCGTGAATGTCCCAATGTCACATTAACTATTGGTTGCACCACCAAGGATGGGGTATATGAAGAGACCAGGTTGCGCTTCTCAGCGATAAGCAGACCAGCTGTCTCTATGACAACCACTAACACTGCAAACAATCATATCGCACATTATGGGATAAGTGTCAGCAACCAAGCTTTGCCTCCGAAAACTGCCAGCACTGCCTCTACAAACGTTCAACATGCTCATTATGGATTAATTATATTCTCGGTCCTGTCACCTCTGGTTATTGTGATCAGCGTGATCATCAGCCGTTACTGCAGATCTCGTCCAAATGAAGGTGAGGAGGCTTCATCCATGGTGTTGTAATCCCCCCAAAGGACCTAGATGACATATATCCTGCCAATGAAGAATACTGAATCAGGCATTATCTTAAAATTTAGCCAGTAGGATTATTGACAGGTAATCCTTTCGGGACTGCTGCTCTACCTCTCAAAAGGGAAAGAAAATGAGCTTTTAGACCATGTAGGTTTTTAGTTTCATTGCAGACAAATTAAAATGATGTAGTTCTGTGAAGCACTCAATGTTGTGCACTTTCCTGCATTCTCTTTTAATTCCAATACTCGAATAACCCCCTAAACTTGTTTACCAGTGATGCAGGAGACGTTGGCAGTCTTTTCACCTAAGACAGGAAGGAAAAAAGCCATAGATCTTTTTTGGTGAAAATGTGTTCTTGCTGCTAACATTTGAAACTGCTCTGCATCACAATGCTGGGACATAGCTAGTGTTgtagtattaatgtagtaacAAGTATTTCCAATCTATTtattgctgacagatgtataagtGTAAAATGAGGAAGGTATGGTATTTCTAGGTATTTtaaccaacagtacagtaattgTTACACTGTACATTGCCATTTCTCTCTTACATATTTGTGAAAACTGTTAATATGACAGTTAGCTACAGTAGATGGTAGCGATGCCAAGCAGTAACAGAAAGCACTCAATGTTCATCAGTTCACCTTGGCCTTGGAAGTGATGAAATGAACCAGCAATTGGCGACTTACTCTTCTGAAATCCTAATGCTATTGAGTAAGGTACTCAACCTGTGGGACCAGtgtctatggcaagacttgaaaatggccgtctagccatgatcaacaaccaacttgacagagcttgaagaattttaaaaagaataatgtgcaaatattgtacaatccaggtgtgcaaagctcttaagagacttacccTGAAATCGCTGCCAGAGGTGAAGCTAAcatatacttatgtaaattagatatatctgtatttcatttatttattctaaaaacaggttttaaatttgtcactgtggggtattgtgtgtagatgggtgagagaaaaaatcAGGCtgtcacaacaaaatgtggaataagtcgacAGGTATGAATACTTTAGGCACTATCGATTTTAGAGATGCAGTAACAGAAAGTGCTCAAGGTTAATCGTTCATCTTGGGCTTGGAAGTGATGAAATGAGCTGGCAATTGGAGAGTTACTGGTCTGAAATCCTAATGCTGTTGTGGCATGAGAAAGGTGCTGTGGGACCAGTGTCAAAATTAGCAAGgataaaaatgttaaaagcatTTTATTATTGGTTGATATCACATTTCATGGAGACTTACCAAACATCTGTTATTCTAATTCTTCTTATATTAACTGACAAACTGAATTTGATACACACTAGTATTATTACATGAGCTGCAAATAAGCTCCATTTCTTTTTTAGGTCTGTTGCTTTGCATTTGTATGCATTTGTATTAacaactgctaaccatgtgtatgtgaccaataacatttgatatgATTTAATTCTGttaagattattattattattattattattatgcaaTAATGTGTTGTGTGCTATGATCACACGGGTGTCATGAAAAAATGTCACTGTATGACCCATATCCATG

Function

NR:

description
uncharacterized protein LOC110486784 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945604.1 False 2332 mRNA 0.39 7 31136808 31146454
XM_036945598.1 True 2345 mRNA 0.39 7 31136810 31146454

Neighbor

gene id symbol gene type direction distance location
LOC110534689 LOC106605368 coding upstream 245422 30873733 ~ 30891386 (+)
LOC110534679 LOC106605381 coding upstream 280762 30851297 ~ 30856046 (+)
plekhf2 plekhf2 coding upstream 292509 30821776 ~ 30844299 (+)
LOC110486724 LOC106581338 coding upstream 328842 30798780 ~ 30807966 (+)
si:dkey-22o22.2 LOC106605377 coding upstream 390657 30618003 ~ 30746151 (+)
sri sorcn coding downstream 52881 31199335 ~ 31202392 (+)
LOC110486889 NA coding downstream 62531 31208985 ~ 31222079 (+)
mxtx2 NA coding downstream 110063 31255824 ~ 31261130 (+)
LOC110534710 LOC106605356 coding downstream 115600 31262054 ~ 31294577 (+)
LOC110486933 can7 coding downstream 153548 31300002 ~ 31315913 (+)
G131742 NA non-coding upstream 12164 31116142 ~ 31124644 (+)
G131721 NA non-coding upstream 35843 31100748 ~ 31100965 (+)
G131720 NA non-coding upstream 37363 31099200 ~ 31099445 (+)
G131719 NA non-coding upstream 80522 31056060 ~ 31056286 (+)
G131556 NA non-coding upstream 228577 30902804 ~ 30908231 (+)
G131773 NA non-coding downstream 41554 31188008 ~ 31188315 (+)
G131777 NA non-coding downstream 48924 31195378 ~ 31195723 (+)
G131782 NA non-coding downstream 61522 31207976 ~ 31208235 (+)
G131794 NA non-coding downstream 81719 31228173 ~ 31228578 (+)
G131813 NA non-coding downstream 103165 31249619 ~ 31249833 (+)
G131517 ccne2 other upstream 386854 30748055 ~ 30749954 (+)
G131491 NA other upstream 436185 30700182 ~ 30700623 (+)
G130414 NA other upstream 1346977 29789576 ~ 29789831 (+)
LOC110486279 LOC106605442 other upstream 1442957 29685855 ~ 29697686 (+)
G130308 NA other upstream 1495712 29600026 ~ 29641096 (+)
eaf1 LOC106581241 other downstream 213982 31360408 ~ 31366322 (+)
G132342 LOC100136303 other downstream 711194 31834170 ~ 31887572 (+)
G133473 LOC106605294 other downstream 2020984 33167438 ~ 33169378 (+)
G133663 LOC106605282 other downstream 2350000 33496454 ~ 33497285 (+)

Expression


Co-expression Network