LOC110486775 (LOC106605366)


Basic Information

Item Value
gene id LOC110486775
gene name LOC106605366
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31151553 ~ 31153817 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558595.2
GGAAATCCCCAGCCTTATAGTTTCACTTTCACTTGGCCTTATATAAACTGCCACTCTTCTGTTCTCGATCATCATCTTCATTGCTGTAGTTCTACAAATATGTTTTTTCAACTCGTCTGGATTCTAGCTGCCTCCGTGCAATGTGGGCTCACACAGGATAGGCCTACCCATGAAGTGAAGTCAGTTTGTGGAGAGGATTCAATTCTGAAATGTAAAGCATTATGTAAGCCTGGGGTCCAATACCGGGCGGTGAGGTGGTACAAGCTGGGTGAGGAGCCCTCTAATAAGGAGTCTGGTCTATTGATGAAGAGGCTATCATCACCTAATAGCACCACCCAATGGTACGccggtctggagcgtgaagtGGAACTTTTGGCTGATGATTCTTTCGATATCTTCCTGCCCAATGTAACGGCTGTTGATAGCGGAAGGTACAAGTGTCTCCTGGCAGCACCTGTAGGAGAGCAGAACCAGGAGGGGCAGGTTCACCTCAGAGTGACAGGTTGCCTTAAGTCCACAGACAAATCAGAAGAAAGGGATACCATTCTAGTTCTTTCCATTGTGGGGATTGTGGTGGCATTGCTGATATTCACCATCAGCTATGTCATCCTAAGGAATATGTTATTGCAAAGGAGTAAGAAGTATCCACAAGAACCACTTCTAGATGCACCCCTTGAGAAGAAAGATTTAATGTTGATTTACACTCTGGGGCCAAACTGGTCGAGACAGGGTTCCATAaaacatgtctgtgtgtgagagcctGTTCTGCTAGTTTGGGTTCATTGTATACTTGAACATAAAGAGGAAATGCAGAGAAAGACTAGGGCACGTTTGAAGCTGTGCAAGGAGCCTAAGAGTTATGTCTACTTTCCAGGAGAAGAATTCATCTTTAGAGCATATGGAGGCAGACAACCCTCTGGCCGGTCCCGTAGAACTAAGATGTTTAGGCTTTTCAAAGAAATGAAGCAGAAACAGCAACCTACACACTTTCACTCAGGCAGCCAAACAGCAGTAAAGCCAGGCTAGAGCAGCAGTTCTCCAGCAACGAGTGCCTGTCTGCAGCATTCATGTGCCTGTGATGCGTAAGGAGCAGAGCCTTGTGAGGGGACCCCATGATCTAAGTCCCAAGATCTAACCCCAACAAGGAACTTCAGGAAAGGGAGAAGGAATAATTCATGATAAGGGGTCATTCTGCAGGGTCGCTCCATGGCAATGTTGGGGTTAATTCCATTTGCATTTCAGTCAATTGAAGTTGACACTGATGTTGAACTGGAAAATTGCCAATGTGTACTACATGGCATTTCATGCCTAATTAAATTCCTGTATTGACTGGTAATGAAATGGAATTGATCTGAGCACTGTTTTATGGGGCTCCCGTGTTGGAAGAATTTGGTGGGACACGCTGGACTCTGCACAGAGAGATGAAACCAACCAATACGGCATTCCATATGAGCCAAGCAAATCTCTCAATGAACTCTAATGTTCAGgcattattgacaagtttttgttattttgtgaGGCCAAAACAATATTTTATTAATCTTGTATGCAGAACCCAAAAATATTATTCCTCCTAGCATTACGAAAGTGGGCTTTGGTGAATATTTGTTTTTTGAACATGATCAGCAATTGTGTGTATACATTGAAAATAATGAAGTCGTAAATGATTTTGTAACGTACTGTTTCTGATGTACATGTGCTATGGTTCTTAGATAAATGTTCTTGAACTTTTTCTTAA

Function

NR:

description
CD83 antigen-like

GO: NA

KEGG:

id description
K06510 CD83; CD83 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558595.2 True 1738 mRNA 0.43 5 31151553 31153817

Neighbor

gene id symbol gene type direction distance location
LOC110486768 NA coding downstream 20832 31128831 ~ 31130721 (-)
trnas-aga-54 NA coding downstream 51729 31099743 ~ 31099824 (-)
trnas-aga-53 NA coding downstream 54622 31096850 ~ 31096931 (-)
trnas-aga-52 NA coding downstream 57491 31093981 ~ 31094062 (-)
trnas-aga-51 NA coding downstream 71836 31079636 ~ 31079717 (-)
LOC110486829 LOC100136479 coding upstream 19150 31172967 ~ 31175530 (-)
LOC110486838 LOC106605362 coding upstream 26192 31180009 ~ 31191472 (-)
LOC110486852 LOC106605360 coding upstream 38646 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 coding upstream 43100 31196917 ~ 31199241 (-)
herpud2 LOC106605359 coding upstream 77536 31231353 ~ 31248873 (-)
G131723 NA non-coding downstream 49808 31100979 ~ 31101745 (-)
G131712 NA non-coding downstream 233114 30915338 ~ 30918439 (-)
G131663 NA non-coding downstream 335691 30814673 ~ 30815862 (-)
G131661 NA non-coding downstream 340826 30810324 ~ 30810727 (-)
G131630 LOC106605377 non-coding downstream 420252 30730724 ~ 30731301 (-)
G132066 NA non-coding upstream 45587 31199404 ~ 31202388 (-)
G132075 NA non-coding upstream 71441 31225258 ~ 31225789 (-)
G132055 NA non-coding upstream 75134 31228951 ~ 31229522 (-)
G132053 NA non-coding upstream 102097 31255914 ~ 31258119 (-)
trnae-cuc LOC106605367 other downstream 251989 30897026 ~ 30899564 (-)
c2h8orf37 cssa05h8orf37 other downstream 255570 30889693 ~ 30896340 (-)
LOC110486376 LOC106605451 other downstream 1272985 29859575 ~ 29878744 (-)
LOC110534614 LOC106605399 other downstream 2673722 28475823 ~ 28533709 (-)
G129582 NA other downstream 2840821 28310319 ~ 28310732 (-)
G132197 NA other upstream 382230 31536047 ~ 31543009 (-)
LOC110486999 prdm1 other upstream 481503 31631886 ~ 31648795 (-)
LOC110514821 NA other upstream 1585012 32738829 ~ 32756992 (-)

Expression


Co-expression Network