LOC110486829 (LOC100136479)


Basic Information

Item Value
gene id LOC110486829
gene name LOC100136479
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31172967 ~ 31175530 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558653.2
TGGGTGGAGGGAGTGCACGCGCACTTCAGAATGTGACGCAGTCGGGGAAATCCCAGTTTAACTTCTCTTTCTGAAGTATATAAACTGCTACCCTCCTGTTCTAAATCGTCATCTTCGTTGCTGTGTACTACAATTATGCTTTTTCAACTCGTCTGCATATTAGCTGCCTCTGTGCAAGGTGGCCTCACACAGGATAGGCCTACACAAGAGGTGAAGTCAGTTTGTGGAGAGGACTCCATTCTGAAATGTAAAGCAATATGTAAGCCTGGGGTCCAATACCGGGCGGTGAGGTGGTACAAGCTGGGTGAGGAGCCCTCTAATAAGGAGTCTGGCCTATTGATGAAGAGGCTATCATCACCTAATAGCACCACCCAATGGTACGCCGGACTGGAGCGTGAAGTGGAACTTTTGGCTGATGACTCTTTCGATATCTTCCTGCCCAATGTAACGGCTGTTGATAGCGGGAGGTACAAGTGTCTCCTGGCAGCACCTGTAGGAGAGCAGAACCAGGAGGGGCAGGTTCACCTCAGAGTGACAGATTGCCTTGAGTCCACAGACCAATCAGAAGAAAGGGATACCATTCTAGTTCTTTCCATTGTGGGGATTGTGGCGGCATTGCTGATATTCACCATCAGCTATGTCATCCTAAGGAATATGTTATTGCAAAGGAGTAAGAAGTATCCACAAGAACCACTTCTAGATGCACCCCTTGAGAAGAAAGATTTAATGTTGATTTACACTCTGGGGCCAAACTGGTCGAGACAGGGTTCCATAaaacatgtctgtgtgtgagagcctGTTCTGCTAGTTTGGGCTCATTGTATACTTGAATGTAAAGAGGAAATGCATAGAAATACTAGGGCACATTTGAAGCAGAGCAACGAGTCTatcatgctgaccacaccgcttgtGTTATGTGCGTGAGCgtggcaaaataaatgtacacatacctGTTATTTAGCAATACCATCCAAACTGCTCGCGCGCATCAACGAGCGCctgcgtagccaggcgctaaaatagacgCTTTATGCGCTGCAAGTCCggcttctcccatctcctcattggtttttcagagcatatacccacatgggtgattgaaagatgcgATCCACACTCCAgcccagttggtggtggtaatgcaccttaaagttggttgtcAAACGCCATATAAAGTCAGAAgaagactgatggaggagagattactagaaacaaactaagtttacccttttatctctggattaattgtcagagtagaggaccttgtgcatttcaggtaaactAACAACCCAATACTTATACCTTCCAGGAGAAGAGTTCACCTCTAGAGCAGATGGAGGCAGACAACCCTCTGGCCGGGACTATAGAACCAATATGTGTAGGCTTTTCAAAGAAATTAAACTGTAGCCTATACCCTTTCACTCAGGCAGCCAAACAGCAGTACAAAGTCAGGCTAGAACAGCAGTTCTCCAGCAATGATTGCTCGTCTGCAGCATCCACTCGCCTGTGATGCGCAAGCAGCAGGGCCTGCTGAAGGGACCCACGATCTAAGCCCCAAGATCTAACCTCAATAAGGAGCTTCAGGAAGGGGTGCGGGAATGGTCGACGATGAGGGGTCATTCTGGAGGGTTGCTCCATGGCAACGTGGGGGTTAATcccatttacatttgagtcaacCCAGGAATTGAGGTCGACATTGACTTTGAACTGGGAAATGACCAATGTGTACAGCATTGATCTTTTAGAATTGCACGCCTAATTCAATTCCTGTACTGACTGGTATTGAAATAAAATTGATTAATGTTCCTCTAAGCAAAATGAAAGTGGGCTTTGGTGAAAAGTAACttgtattgtttttttaaatatgatCAGCAATTCTGTGGATACATTGAAAATAAAGCCTTGTAAATAATTTTGTAACTAACTGTATCTGATGTATGCTGTCTGAGGTGCTAAATGGCTTTTAACAAATCTCTACCTATTTCACAagacaaatacataaatacataaatacctCTTTGCTAA

Function

NR:

description
CD83 antigen-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558653.2 True 2025 mRNA 0.45 5 31172967 31175530

Neighbor

gene id symbol gene type direction distance location
LOC110486775 LOC106605366 coding downstream 19150 31151553 ~ 31153817 (-)
LOC110486768 NA coding downstream 42246 31128831 ~ 31130721 (-)
trnas-aga-54 NA coding downstream 73143 31099743 ~ 31099824 (-)
trnas-aga-53 NA coding downstream 76036 31096850 ~ 31096931 (-)
trnas-aga-52 NA coding downstream 78905 31093981 ~ 31094062 (-)
LOC110486838 LOC106605362 coding upstream 4479 31180009 ~ 31191472 (-)
LOC110486852 LOC106605360 coding upstream 16933 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 coding upstream 21387 31196917 ~ 31199241 (-)
herpud2 LOC106605359 coding upstream 55823 31231353 ~ 31248873 (-)
pkdc LOC106605355 coding upstream 122603 31298133 ~ 31299976 (-)
G131723 NA non-coding downstream 71222 31100979 ~ 31101745 (-)
G131712 NA non-coding downstream 254528 30915338 ~ 30918439 (-)
G131663 NA non-coding downstream 357105 30814673 ~ 30815862 (-)
G131661 NA non-coding downstream 362240 30810324 ~ 30810727 (-)
G131630 LOC106605377 non-coding downstream 441666 30730724 ~ 30731301 (-)
G132066 NA non-coding upstream 23874 31199404 ~ 31202388 (-)
G132075 NA non-coding upstream 49728 31225258 ~ 31225789 (-)
G132055 NA non-coding upstream 53421 31228951 ~ 31229522 (-)
G132053 NA non-coding upstream 80384 31255914 ~ 31258119 (-)
trnae-cuc LOC106605367 other downstream 273403 30897026 ~ 30899564 (-)
c2h8orf37 cssa05h8orf37 other downstream 276984 30889693 ~ 30896340 (-)
LOC110486376 LOC106605451 other downstream 1294399 29859575 ~ 29878744 (-)
LOC110534614 LOC106605399 other downstream 2695136 28475823 ~ 28533709 (-)
G129582 NA other downstream 2862235 28310319 ~ 28310732 (-)
G132197 NA other upstream 360517 31536047 ~ 31543009 (-)
LOC110486999 prdm1 other upstream 459790 31631886 ~ 31648795 (-)
LOC110514821 NA other upstream 1563299 32738829 ~ 32756992 (-)

Expression


Co-expression Network