LOC110486838 (LOC106605362)


Basic Information

Item Value
gene id LOC110486838
gene name LOC106605362
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31180009 ~ 31191472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558672.2
CCTAGACGTCTAAGGTCACCTAATTGTTCGTCCTCAAAACGGTTATTAATTTAAGAAGGAGTTAAAAGTGTAACGAAATAAGAGCGCCTGTAGGCTATTCATTTTGAGCTGAGAGGTCTTCCATCTTCCAACAAAGGTTTTGGTTATCTCTCCGCTGCTCGTGTTCCTATTGTGCATCCTCCCCTCCCACGCCCAGGACGAGTACTCTGGTTACCACTCAGGTGATGAACACACCTATGAGGGCTCCTTGGTCGACAACTATGAGCGTTCAGGATACCCACAACCAGAGGAATACCCACCGGAGCCCACTCACAGCTATGAGGAGCAGCAACCCTCATCTGGATATGACCCCTATGCACCAGCCCCCACCAGTGTGAGCATGATCACAGAGGACTCCtacccctacaccaccaccacacagGTACCATACGAGCAGGAGCCCTACGAAGAGTCGCTCCAGGCCCCTGGTGGTGGGGAGGCTTCTCTGGGGGAGGAGGGGCCAACAGACTGTAACTGTGAGCCTGGAGAGCCAGGGTTCGCTGGGTTTGCAGGGCCCAAGGGAGCCAGAGGACTGCAAGGTAAAGATGGCTTCCCTGGGGTTCAGGGACGGGAGgggTACAAAGGATTCAAAGGAGTTctaggaagaggaggagacacaggGCCTGAGGGTGACTCCGGGCCTGATGGGGAGGGCGGTGCCTCTGGTTTCTCTGGAGCCCAGGGCTTGCCTGGTCTTCCTGGAGATCCAGGTGAGACAGGGGTGCTAGGACTGAAGGGTGACATCGGTATGGAGGGGCCACGCGGAGGAGTGGGGGTAACGGGTGAAACTGGTCGAATTGGTGAGGCAGGGCCTGGTGGGCCTGATGGAACTGGAGGTATCAAGGGATCAACTGGAGCAGAAGGGAAACAGGGTCCTGAGGGAACAGAAGGGGAAAAGGGTCAGATTGGAGCACCTGGATTCTCAGGAGACCATGGGGAGATGGGCTATAATGGGTATCCTGGAGAGCCGGGAGGCAGAGGAGAGACCGGTCACAAGgGTGACCAAGGCCCAGGGGGCATGCCAGGCAGTGATGGGGAGCCTGGAGAGGATGGTCCTCTTGGAGTTCCTGGGGTGATCGGCTTTCCTGGAGAGTTTGGACAAAAGGGCACAAGCGGGGATCGTGGTGTGAGGGGACCTCCTGGGAGAGTAGGAGCTGGGGGGCCTCAAGGAGCGAGAGGAGATGCAGGAATTCCAGGGAAACCAGGACCTAAAGGCCTGCAGGCCCAGCCTGGAGCCAAAGGGGAGACAGGACCTGATGGTGAGAAGGGTGGGGTTGGAAGAACTGGTGTGAAGGGAGAAAAAGAGGACAAGGGAAGTTTTGGAGCACGTGGTGACAAAGGACAGCAAGGGGAGAGAGGTACCATCGGCCCTGATGGCATTGTTGGACGAAATGGCCCCCCCGGCATCCCAGGCTCCAGAGGAGAGCCAGGTCCAGGTGGTGACCTGGGCGTCAAAGGTGGCTCTGGACCTAAAGGAGTGCCAGGTGCCCCTGGCCCTGGGCTGACAGATGAGCAGGTATTGCAGCTGTGTAAAGGAGTGGTGACAGCCCAGATCTCCCAGTATGCAGCTTCCATCCGGGTCAAGTGTTCCCAGGGCTGCCCCATCAACAACCGCACACTTATTGGGCCGCCCGGAACCAGGGGACCAACTGGAGAATCAGGCAAACCCggtaaaGCGGGCAAAGCTGGAGTGAAAGGAGGCAGGGGCATCCAAGGGGACACAGGAGTGGATGGTCAGAAGGGGACAGTGGGTGAAAGAGGAACAAAAGGCCCGAAAGGAAAGGGCGGTGAGCCTGGTAAAGGTCTGCCAGGACACGATGGGCATCAAGGCCTCAGAGGGCTGCCAGGCCACCCAGCAGAGCCAAAGAATGGTATGGCAGGTCACAGAGGGCCCCGTGGTTTCACAGGCGCTTTGGGCCAGCCTGGCATGGCAGGCAACGCAGGAGTGCCCGGCTTCTGTGAGGCACGGGACTGCAGCATTCACGCGCCTGTGATGCGCAAGGAGCAGGGCCTAGTGAAGGGACCCCGCGATCTAAGCCCCAAGATTTAACCCCAACAAGGAGCTTCAGGAATAGGTGAAGGTCCACGACGAGGGGTCACTCTGGACGGTCGCTCCATGACAACATTGAAGTTAATTCAATTCACATCTCAGCCAAACCAGGAATTGACATTGAGTTTTGAACTGGGAAATTACCAATGTGTACAGCATTGATCTTTTTGAATTTCATGCCTAATTCAATTCCTGTATTGACTGGTATTGAAATGTAATTAATCCGAGCACTGTTCAATGGGGCTCACCAGTGATGGAAGGGTTTGGTGGGACACGCTGGACTCTGCACAGAGATGAAACCAGCCTTGACGCATTTCATCTGAGCCAAGCAAGGCTCCAAATGAACTCTGTTTAGGCATAATTGATAACTTTTTTGTTAGgccaaaatagatttttttatgCAGAAACAAAAAATGAAATTGTCTTCCTCCAAGCAAACCATAAGTAAAGGGGCTTGAGAAACTGGCTAAAAGAAATTGGCAGAAAATGAAACTTCCAGGAGTCTCTGGCTACCAGTCAGGTTTTGTTTTTGATATGATCAACAATGATGGGTATACATTGAAAATAAAAAGTGATGTAAATAATTTTGTAAAGTATCGCAAGTACATGTACTGTGTGTTCTGAAATATCACTGTTTTAGATAAATTCTGTCTTACTTTTTCTTAAGATGAGTCCTCACTTTTTTAGTCGCCACAGTTTGAGCGTGTTTCTGAGAATGTGTGGTCTCTTTCAGTCATCTCATATTTGGGTTAATCTAAATAATTTATCCCTCCCCCCCAATTAACAGATGTTCACAGTCAAGATAACATTGatcaatataaaataaaaaataacatactATTTGATATTATTTCATATTAAAAATAATACATTGAAatgtgttatacagtatattgtatttgGAATTTCTATAGTTAAATAATCTGACAATGATTTGTAGGACAGCACAAAATGTCTGTCGATTAAATACATTTACTATATTCATTGGATGGCGATTTTGATTTTTAAATAGATTTTCATGTACATTATTTATTTTGCATAAATAACTTTCACGTGAACAGGATGTTAAACTCTTATCACCTCTTAATTGATATTTTTGTCATTGTCAATCTTCATTGAGAATCATTCCAACACATTACAAGGCAGAAACATAGCCCTGTAAACTCAAGTATATCACACACGTGTTCTTAACATTTGTACTTTTGTGTACATGTTGGCAATCAGAACCCTGATACAAAAGAGTCACAATGTTTGGAGACAATTCAGATTAGAAAATGAGCAGAGCATGAAAATGGGTGATTATCTCTCATCAAAAGCATGCTAAACATTATGGTATACAACTATGCTATGAAAGTACACATGAATAAACACAAGAAAATAAACCTTATTAAAATGTTTAACGCT
>XM_021558664.2
TTTCTCACCCTGTCGAGGAGAAGAGAGAGTCGAGCCCGTGGCTGCCTGAGAACCTTATGgatccctgagagagggagagcaagggagagagagagaggaaggggaccaGTGCTGTGAGTGGGGAGCGAGAATGCTGTAAGGAGTACAGTTCAGGGAGGAAATAAACTGGACTTTTctgtctttatttaaaaaaaacctgTGGACTATCTGATACGTTGAGTGAGGGTCTCAGTGGATTATACAGAACCAGACAGAACCAGCACCATGGGAGCCCCCAGGGTAAAGGTTTTGGTTATCTCTCCGCTGCTCGTGTTCCTATTGTGCATCCTCCCCTCCCACGCCCAGGACGAGTACTCTGGTTACCACTCAGGTGATGAACACACCTATGAGGGCTCCTTGGTCGACAACTATGAGCGTTCAGGATACCCACAACCAGAGGAATACCCACCGGAGCCCACTCACAGCTATGAGGAGCAGCAACCCTCATCTGGATATGACCCCTATGCACCAGCCCCCACCAGTGTGAGCATGATCACAGAGGACTCCtacccctacaccaccaccacacagGTACCATACGAGCAGGAGCCCTACGAAGAGTCGCTCCAGGCCCCTGGTGGTGGGGAGGCTTCTCTGGGGGAGGAGGGGCCAACAGACTGTAACTGTGAGCCTGGAGAGCCAGGGTTCGCTGGGTTTGCAGGGCCCAAGGGAGCCAGAGGACTGCAAGGTAAAGATGGCTTCCCTGGGGTTCAGGGACGGGAGgggTACAAAGGATTCAAAGGAGTTctaggaagaggaggagacacaggGCCTGAGGGTGACTCCGGGCCTGATGGGGAGGGCGGTGCCTCTGGTTTCTCTGGAGCCCAGGGCTTGCCTGGTCTTCCTGGAGATCCAGGTGAGACAGGGGTGCTAGGACTGAAGGGTGACATCGGTATGGAGGGGCCACGCGGAGGAGTGGGGGTAACGGGTGAAACTGGTCGAATTGGTGAGGCAGGGCCTGGTGGGCCTGATGGAACTGGAGGTATCAAGGGATCAACTGGAGCAGAAGGGAAACAGGGTCCTGAGGGAACAGAAGGGGAAAAGGGTCAGATTGGAGCACCTGGATTCTCAGGAGACCATGGGGAGATGGGCTATAATGGGTATCCTGGAGAGCCGGGAGGCAGAGGAGAGACCGGTCACAAGgGTGACCAAGGCCCAGGGGGCATGCCAGGCAGTGATGGGGAGCCTGGAGAGGATGGTCCTCTTGGAGTTCCTGGGGTGATCGGCTTTCCTGGAGAGTTTGGACAAAAGGGCACAAGCGGGGATCGTGGTGTGAGGGGACCTCCTGGGAGAGTAGGAGCTGGGGGGCCTCAAGGAGCGAGAGGAGATGCAGGAATTCCAGGGAAACCAGGACCTAAAGGCCTGCAGGCCCAGCCTGGAGCCAAAGGGGAGACAGGACCTGATGGTGAGAAGGGTGGGGTTGGAAGAACTGGTGTGAAGGGAGAAAAAGAGGACAAGGGAAGTTTTGGAGCACGTGGTGACAAAGGACAGCAAGGGGAGAGAGGTACCATCGGCCCTGATGGCATTGTTGGACGAAATGGCCCCCCCGGCATCCCAGGCTCCAGAGGAGAGCCAGGTCCAGGTGGTGACCTGGGCGTCAAAGGTGGCTCTGGACCTAAAGGAGTGCCAGGTGCCCCTGGCCCTGGGCTGACAGATGAGCAGGTATTGCAGCTGTGTAAAGGAGTGGTGACAGCCCAGATCTCCCAGTATGCAGCTTCCATCCGGGTCAAGTGTTCCCAGGGCTGCCCCATCAACAACCGCACACTTATTGGGCCGCCCGGAACCAGGGGACCAACTGGAGAATCAGGCAAACCCggtaaaGCGGGCAAAGCTGGAGTGAAAGGAGGCAGGGGCATCCAAGGGGACACAGGAGTGGATGGTCAGAAGGGGACAGTGGGTGAAAGAGGAACAAAAGGCCCGAAAGGAAAGGGCGGTGAGCCTGGTAAAGGTCTGCCAGGACACGATGGGCATCAAGGCCTCAGAGGGCTGCCAGGCCACCCAGCAGAGCCAAAGAATGGTATGGCAGGTCACAGAGGGCCCCGTGGTTTCACAGGCGCTTTGGGCCAGCCTGGCATGGCAGGCAACGCAGGAGTGCCCGGCTTCTGTGAGGCACGGGACTGCAGCATTCACGCGCCTGTGATGCGCAAGGAGCAGGGCCTAGTGAAGGGACCCCGCGATCTAAGCCCCAAGATTTAACCCCAACAAGGAGCTTCAGGAATAGGTGAAGGTCCACGACGAGGGGTCACTCTGGACGGTCGCTCCATGACAACATTGAAGTTAATTCAATTCACATCTCAGCCAAACCAGGAATTGACATTGAGTTTTGAACTGGGAAATTACCAATGTGTACAGCATTGATCTTTTTGAATTTCATGCCTAATTCAATTCCTGTATTGACTGGTATTGAAATGTAATTAATCCGAGCACTGTTCAATGGGGCTCACCAGTGATGGAAGGGTTTGGTGGGACACGCTGGACTCTGCACAGAGATGAAACCAGCCTTGACGCATTTCATCTGAGCCAAGCAAGGCTCCAAATGAACTCTGTTTAGGCATAATTGATAACTTTTTTGTTAGgccaaaatagatttttttatgCAGAAACAAAAAATGAAATTGTCTTCCTCCAAGCAAACCATAAGTAAAGGGGCTTGAGAAACTGGCTAAAAGAAATTGGCAGAAAATGAAACTTCCAGGAGTCTCTGGCTACCAGTCAGGTTTTGTTTTTGATATGATCAACAATGATGGGTATACATTGAAAATAAAAAGTGATGTAAATAATTTTGTAAAGTATCGCAAGTACATGTACTGTGTGTTCTGAAATATCACTGTTTTAGATAAATTCTGTCTTACTTTTTCTTAAGATGAGTCCTCACTTTTTTAGTCGCCACAGTTTGAGCGTGTTTCTGAGAATGTGTGGTCTCTTTCAGTCATCTCATATTTGGGTTAATCTAAATAATTTATCCCTCCCCCCCAATTAACAGATGTTCACAGTCAAGATAACATTGatcaatataaaataaaaaataacatactATTTGATATTATTTCATATTAAAAATAATACATTGAAatgtgttatacagtatattgtatttgGAATTTCTATAGTTAAATAATCTGACAATGATTTGTAGGACAGCACAAAATGTCTGTCGATTAAATACATTTACTATATTCATTGGATGGCGATTTTGATTTTTAAATAGATTTTCATGTACATTATTTATTTTGCATAAATAACTTTCACGTGAACAGGATGTTAAACTCTTATCACCTCTTAATTGATATTTTTGTCATTGTCAATCTTCATTGAGAATCATTCCAACACATTACAAGGCAGAAACATAGCCCTGTAAACTCAAGTATATCACACACGTGTTCTTAACATTTGTACTTTTGTGTACATGTTGGCAATCAGAACCCTGATACAAAAGAGTCACAATGTTTGGAGACAATTCAGATTAGAAAATGAGCAGAGCATGAAAATGGGTGATTATCTCTCATCAAAAGCATGCTAAACATTATGGTATACAACTATGCTATGAAAGTACACATGAATAAACACAAGAAAATAAACCTTATTAAAATGTTTAACGCT

Function

NR:

description
collagen alpha-1(II) chain-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558672.2 False 3493 mRNA 0.49 26 31180009 31188962
XM_021558664.2 True 3642 mRNA 0.49 26 31180009 31191472

Neighbor

gene id symbol gene type direction distance location
LOC110486829 LOC100136479 coding downstream 4479 31172967 ~ 31175530 (-)
LOC110486775 LOC106605366 coding downstream 26192 31151553 ~ 31153817 (-)
LOC110486768 NA coding downstream 49288 31128831 ~ 31130721 (-)
trnas-aga-54 NA coding downstream 80185 31099743 ~ 31099824 (-)
trnas-aga-53 NA coding downstream 83078 31096850 ~ 31096931 (-)
LOC110486852 LOC106605360 coding upstream 991 31192419 ~ 31196292 (-)
LOC110486868 LOC106605361 coding upstream 5445 31196917 ~ 31199241 (-)
herpud2 LOC106605359 coding upstream 39881 31231353 ~ 31248873 (-)
pkdc LOC106605355 coding upstream 106661 31298133 ~ 31299976 (-)
LOC110486940 LOC106605354 coding upstream 126133 31317605 ~ 31352632 (-)
G132020 NA non-coding downstream 4589 31151591 ~ 31175420 (-)
G131723 NA non-coding downstream 78264 31100979 ~ 31101745 (-)
G131712 NA non-coding downstream 261570 30915338 ~ 30918439 (-)
G131663 NA non-coding downstream 364147 30814673 ~ 30815862 (-)
G131661 NA non-coding downstream 369282 30810324 ~ 30810727 (-)
G132066 NA non-coding upstream 7932 31199404 ~ 31202388 (-)
G132075 NA non-coding upstream 33786 31225258 ~ 31225789 (-)
G132055 NA non-coding upstream 37479 31228951 ~ 31229522 (-)
G132053 NA non-coding upstream 64442 31255914 ~ 31258119 (-)
trnae-cuc LOC106605367 other downstream 280445 30897026 ~ 30899564 (-)
c2h8orf37 cssa05h8orf37 other downstream 284026 30889693 ~ 30896340 (-)
LOC110486376 LOC106605451 other downstream 1301441 29859575 ~ 29878744 (-)
LOC110534614 LOC106605399 other downstream 2702178 28475823 ~ 28533709 (-)
G129582 NA other downstream 2869277 28310319 ~ 28310732 (-)
G132197 NA other upstream 344575 31536047 ~ 31543009 (-)
LOC110486999 prdm1 other upstream 443848 31631886 ~ 31648795 (-)
LOC110514821 NA other upstream 1547357 32738829 ~ 32756992 (-)

Expression


Co-expression Network