LOC110486868 (LOC106605361)


Basic Information

Item Value
gene id LOC110486868
gene name LOC106605361
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31196917 ~ 31199241 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558703.2
AAAGTAATACTATAGATAGTAGTTGTGCTTATAGTAATAGATTTGCATACAGATTtttcaaaaaaatgtaaacaagtGAATATAATGCCAAATTTAAGACCACCAAGagtcatcattacatcattacacaaGATCAGAAACACTCGTCTCAGAACCATTAGGGTGCGCTTTCTTTTTGGACAGGAAACGCTGAATCGTGCCTCCACTGAAAAGCTATTCTGCGGCTGACAGGATCAGAGGGCACTGCTGCGGAGCCCATGCAGCGCCAGTCCATGGACAAATCTGGCTCATCTCTAGCCTACAGACCTGCCTTTATCGACTAGGGAATCAAACACGCAAAGTGATTCTTCTTTGCCTTGGTATACAGTAGAAGCCCTGACTGAGATGTATGGACAGAACCCTAACTGGTTGTGGTCGAACGGAGCGCCTCTACGCCACCAAGGGCACCTGGGCAGACTTGGCTCAGCAACCCTGAGGCAatgggaggatgaggaagaaggAAAAGAGGAAGAACATGCAATTTGGACCAGGGAGCACCCAGCAATCTGTTGCTATTCTACAAATGGCCATGGTCTCACCCAAGAGTGTGTTCAGAACCACTGGGGCTGGGCTGGTACCGAGAGTCCCTTTGGCCCTGTCCACACAGACCTAGTTAGCATCCAAAGCCAGAGTGACACAGGGCTAGATGCCCCTGAAATGTGGATGGATGTCCCCCCACACCAGCCCTCCTTGGGTGGTGCTGATGGAGAAGAATCATCCCAGCATTTTTTAGACAGTCAATGGGGGAGCCACAGGACAGAGGGCCATGGCTGTGCTTGTGTGCATGGACCAAGTGAACCAGGAAGATGTTGCCACAGTTGTGCTGGTTCCCCTCTCTTCAATTTCAGAAGTAAGATGAGGAAGACAATAATGGTAGGAGTCGAGGTGGAAATAGTGGAGGAAGTAGCCTATGAGGACACAGAGACACTTGAAGTAATATCAGGAGTCTATCCAAATTATTTGATGGAAACCATTTTGCTGCACGATGACCAGCTTTTCCCCACCTAAACCTGCATTCCTTCAAAAGTTGTTTGAAAAGGGAACTTTGTGTTTTTAAATGTCAGCTTTGTCGTTTGAAtgcattttaaatgtatttaaatgtagTTTAAATATGACAATTTATTTTAAATACCATTTAAAGGCCTTTTATATGTCAGTGTTATGTAAGTGACGTTactttaattaaaaaaaacatttacccaATAAAATAAGAAAACCTA
>XM_021558711.2
AAAGTAATACTATAGATAGTAGTTGTGCTTATAGTAATAGATTTGCATACAGATTtttcaaaaaaatgtaaacaagtGAATATAATGCCAAATTTAAGACCACCAAGagtcatcattacatcattacacaaGATCAGAAACACTCGTCTCAGAACCATTAGGGTGCGCTTTCTTTTTGGACAGGAAACGCTGAATCGTGCCTCCACTGAAAAGCTATTCTGCGGCTGACAGGATCAGAGGGCACTGCTGCGGAGCCCATGCAGCGCCAGTCCATGGACAAATCTGGCTCATCTCTAGCCTACAGACCTGCCTTTATCGACTAGGGAATCAAACACGCAAAGTGATTCTTCTTTGCCTTGGTATACAGTAGAAGCCCTGACTGAGATGTATGGACAGAACCCTAACTGGTTGTGGTCGAACGGAGCGCCTCTACGCCACCAAGGGCACCTGGGCAGACTTGGCTCAGCAACCCTGAGGCAatgggaggatgaggaagaaggAAAAGAGGAAGAACATGCAATTTGGACCAGGGAGCACCCAGCAATCTGTTGCTATTCTACAAATGGCCATGGTCTCACCCAAGAGTGTGTTCAGAACCACTGGGGCTGGGCTGGTACCGAGAGTCCCTTTGGCCCTGTCCACACAGACCTAGTTAGCATCCAAAGCCAGAGTGACACAGGGCTAGATGCCCCTGAAATGTGGATGGATGTCCCCCCACACCAGCCCTCCTTGGGTGGTGCTGATGGAGAAGAATCATCCCAGCATTTTTTAGACAGTCAATGGGGGAGCCACAGGACAGAGGGCCATGGCTGTGCTTGTGTGCATGGACCAAGTGAACCAGGAAGATGTTGCCACAGTTGTGCTGGTTCCCCTCTCTTCAATTTCAGAATGAGGAAGACAATAATGGTAGGAGTCGAGGTGGAAATAGTGGAGGAAGTAGCCTATGAGGACACAGAGACACTTGAAGTAATATCAGGAGTCTATCCAAATTATTTGATGGAAACCATTTTGCTGCACGATGACCAGCTTTTCCCCACCTAAACCTGCATTCCTTCAAAAGTTGTTTGAAAAGGGAACTTTGTGTTTTTAAATGTCAGCTTTGTCGTTTGAAtgcattttaaatgtatttaaatgtagTTTAAATATGACAATTTATTTTAAATACCATTTAAAGGCCTTTTATATGTCAGTGTTATGTAAGTGACGTTactttaattaaaaaaaacatttacccaATAAAATAAGAAAACCTA
>XM_036945637.1
AAAGTAATACTATAGATAGTAGTTGTGCTTATAGTAATAGATTTGCATACAGATTtttcaaaaaaatgtaaacaagtGAATATAATGCCAAATTTAAGACCACCAAGagtcatcattacatcattacacaaGATCAGAAACACTCGTCTCAGAACCATTAGGGTGCGCTTTCTTTTTGGACAGGAAACGCTGAATCGTGCCTCCACTGAAAAGCTATTCTGCGGCTGACAGGATCAGAGGGCACTGCTGCGGAGCCCATGCAGCGCCAGTCCATGGACAAATCTGGCTCATCTCTAGCCTACAGACCTGCCTTTATCGACTAGGGAATCAAACACGCAAAGTGATTCTTCTTTGCCTTGGTATACAGTAGAAGCCCTGACTGAGATGTATGGACAGAACCCTAACTGGTTGTGGTCGAACGGAGCGCCTCTACGCCACCAAGGGCACCTGGGCAGACTTGGCTCAGCAACCCTGAGGCAatgggaggatgaggaagaaggAAAAGAGGAAGAACATGCAATTTGGACCAGGGAGCACCCAGCAATCTGTTGCTATTCTACAAGTTTGTTTTCAAGTGGCATGCCTTGTTGTCTTGGGGTAAACAGGGTTTATGCTGATGGCCATGGTCTCACCCAAGAGTGTGTTCAGAACCACTGGGGCTGGGCTGGTACCGAGAGTCCCTTTGGCCCTGTCCACACAGACCTAGTTAGCATCCAAAGCCAGAGTGACACAGGGCTAGATGCCCCTGAAATGTGGATGGATGTCCCCCCACACCAGCCCTCCTTGGGTGGTGCTGATGGAGAAGAATCATCCCAGCATTTTTTAGACAGTCAATGGGGGAGCCACAGGACAGAGGGCCATGGCTGTGCTTGTGTGCATGGACCAAGTGAACCAGGAAGATGTTGCCACAGTTGTGCTGGTTCCCCTCTCTTCAATTTCAGAAGTAAGATGAGGAAGACAATAATGGTAGGAGTCGAGGTGGAAATAGTGGAGGAAGTAGCCTATGAGGACACAGAGACACTTGAAGTAATATCAGGAGTCTATCCAAATTATTTGATGGAAACCATTTTGCTGCACGATGACCAGCTTTTCCCCACCTAAACCTGCATTCCTTCAAAAGTTGTTTGAAAAGGGAACTTTGTGTTTTTAAATGTCAGCTTTGTCGTTTGAAtgcattttaaatgtatttaaatgtagTTTAAATATGACAATTTATTTTAAATACCATTTAAAGGCCTTTTATATGTCAGTGTTATGTAAGTGACGTTactttaattaaaaaaaacatttacccaATAAAATAAGAAAACCTA
>XM_036945651.1
AAAGTAATACTATAGATAGTAGTTGTGCTTATAGTAATAGATTTGCATACAGATTtttcaaaaaaatgtaaacaagtGAATATAATGCCAAATTTAAGACCACCAAGagtcatcattacatcattacacaaGATCAGAAACACTCGTCTCAGAACCATTAGGGTGCGCTTTCTTTTTGGACAGGAAACGCTGAATCGTGCCTCCACTGAAAAGCTATTCTGCGGCTGACAGGATCAGAGGGCACTGCTGCGGAGCCCATGCAGCGCCAGTCCATGGACAAATCTGGCTCATCTCTAGCCTACAGACCTGCCTTTATCGACTAGGGAATCAAACACGCAAAGTGATTCTTCTTTGCCTTGGTATACAGTAGAAGCCCTGACTGAGATGTATGGACAGAACCCTAACTGGTTGTGGTCGAACGGAGCGCCTCTACGCCACCAAGGGCACCTGGGCAGACTTGGCTCAGCAACCCTGAGGCAatgggaggatgaggaagaaggAAAAGAGGAAGAACATGCAATTTGGACCAGGGAGCACCCAGCAATCTGTTGCTATTCTACAAGTTTGTTTTCAAGTGGCATGCCTTGTTGTCTTGGGGTAAACAGGGTTTATGCTGATGGCCATGGTCTCACCCAAGAGTGTGTTCAGAACCACTGGGGCTGGGCTGGTACCGAGAGTCCCTTTGGCCCTGTCCACACAGACCTAGTTAGCATCCAAAGCCAGAGTGACACAGGGCTAGATGCCCCTGAAATGTGGATGGATGTCCCCCCACACCAGCCCTCCTTGGGTGGTGCTGATGGAGAAGAATCATCCCAGCATTTTTTAGACAGTCAATGGGGGAGCCACAGGACAGAGGGCCATGGCTGTGCTTGTGTGCATGGACCAAGTGAACCAGGAAGATGTTGCCACAGTTGTGCTGGTTCCCCTCTCTTCAATTTCAGAATGAGGAAGACAATAATGGTAGGAGTCGAGGTGGAAATAGTGGAGGAAGTAGCCTATGAGGACACAGAGACACTTGAAGTAATATCAGGAGTCTATCCAAATTATTTGATGGAAACCATTTTGCTGCACGATGACCAGCTTTTCCCCACCTAAACCTGCATTCCTTCAAAAGTTGTTTGAAAAGGGAACTTTGTGTTTTTAAATGTCAGCTTTGTCGTTTGAAtgcattttaaatgtatttaaatgtagTTTAAATATGACAATTTATTTTAAATACCATTTAAAGGCCTTTTATATGTCAGTGTTATGTAAGTGACGTTactttaattaaaaaaaacatttacccaATAAAATAAGAAAACCTA
>XR_005036345.1
AAAGTAATACTATAGATAGTAGTTGTGCTTATAGTAATAGATTTGCATACAGATTtttcaaaaaaatgtaaacaagtGAATATAATGCCAAATTTAAGACCACCAAGagtcatcattacatcattacacaaGATCAGAAACACTCGTCTCAGAACCATTAGGGTGCGCTTTCTTTTTGGACAGGAAACGCTGAATCGTGCCTCCACTGAAAAGCTATTCTGCGGCTGACAGGATCAGAGGGCACTGCTGCGGAGCCCATGCAGCGCCAGTCCATGGACAAATCTGGCTCATCTCTAGCCTACAGACCTGCCTTTATCGACTAGGGAATCAAACACGCAAAGTGATTCTTCTTTGCCTTGGTATACAGTAGAAGCCCTGACTGAGATGTATGGACAGAACCCTAACTGGTTGTGGTCGAACGGAGCGCCTCTACGCCACCAAGGGCACCTGGGCAGACTTGGCTCAGCAACCCTGAGGCAatgggaggatgaggaagaaggAAAAGAGGAAGAACATGCAATTTGGACCAGGGAGCACCCAGCAATCTGTTGCTATTCTACAAGTAAGAGTGAGGTGTATGAGATGGCCATGGTCTCACCCAAGAGTGTGTTCAGAACCACTGGGGCTGGGCTGGTACCGAGAGTCCCTTTGGCCCTGTCCACACAGACCTAGTTAGCATCCAAAGCCAGAGTGACACAGGGCTAGATGCCCCTGAAATGTGGATGGATGTCCCCCCACACCAGCCCTCCTTGGGTGGTGCTGATGGAGAAGAATCATCCCAGCATTTTTTAGACAGTCAATGGGGGAGCCACAGGACAGAGGGCCATGGCTGTGCTTGTGTGCATGGACCAAGTGAACCAGGAAGATGTTGCCACAGTTGTGCTGGTTCCCCTCTCTTCAATTTCAGAATGAGGAAGACAATAATGGTAGGAGTCGAGGTGGAAATAGTGGAGGAAGTAGCCTATGAGGACACAGAGACACTTGAAGTAATATCAGGAGTCTATCCAAATTATTTGATGGAAACCATTTTGCTGCACGATGACCAGCTTTTCCCCACCTAAACCTGCATTCCTTCAAAAGTTGTTTGAAAAGGGAACTTTGTGTTTTTAAATGTCAGCTTTGTCGTTTGAAtgcattttaaatgtatttaaatgtagTTTAAATATGACAATTTATTTTAAATACCATTTAAAGGCCTTTTATATGTCAGTGTTATGTAAGTGACGTTactttaattaaaaaaaacatttacccaATAAAATAAGAAAACCTA
>XM_036945646.1
ATAAATGCAACGCTGACTAATAAAGTAATACTATAGATAGTAGTTGTGCTTATAGTAATAGATTTGCATACAGATTtttcaaaaaaatgtaaacaagtGAATATAATGCCAAATTGAAACGCTGAATCGTGCCTCCACTGAAAAGCTATTCTGCGGCTGACAGGATCAGAGGGCACTGCTGCGGAGCCCATGCAGCGCCAGTCCATGGACAAATCTGGCTCATCTCTAGCCTACAGACCTGCCTTTATCGACTAGGGAATCAAACACGCAAAGTGATTCTTCTTTGCCTTGGTATACAGTAGAAGCCCTGACTGAGATGTATGGACAGAACCCTAACTGGTTGTGGTCGAACGGAGCGCCTCTACGCCACCAAGGGCACCTGGGCAGACTTGGCTCAGCAACCCTGAGGCAatgggaggatgaggaagaaggAAAAGAGGAAGAACATGCAATTTGGACCAGGGAGCACCCAGCAATCTGTTGCTATTCTACAAGTTTGTTTTCAAGTGGCATGCCTTGTTGTCTTGGGGTAAACAGGGTTTATGCTGATGGCCATGGTCTCACCCAAGAGTGTGTTCAGAACCACTGGGGCTGGGCTGGTACCGAGAGTCCCTTTGGCCCTGTCCACACAGACCTAGTTAGCATCCAAAGCCAGAGTGACACAGGGCTAGATGCCCCTGAAATGTGGATGGATGTCCCCCCACACCAGCCCTCCTTGGGTGGTGCTGATGGAGAAGAATCATCCCAGCATTTTTTAGACAGTCAATGGGGGAGCCACAGGACAGAGGGCCATGGCTGTGCTTGTGTGCATGGACCAAGTGAACCAGGAAGATGTTGCCACAGTTGTGCTGGTTCCCCTCTCTTCAATTTCAGAAGTAAGATGAGGAAGACAATAATGGTAGGAGTCGAGGTGGAAATAGTGGAGGAAGTAGCCTATGAGGACACAGAGACACTTGAAGTAATATCAGGAGTCTATCCAAATTATTTGATGGAAACCATTTTGCTGCACGATGACCAGCTTTTCCCCACCTAAACCTGCATTCCTTCAAAAGTTGTTTGAAAAGGGAACTTTGTGTTTTTAAATGTCAGCTTTGTCGTTTGAAtgcattttaaatgtatttaaatgtagTTTAAATATGACAATTTATTTTAAATACCATTTAAAGGCCTTTTATATGTCAGTGTTATGTAAGTGACGTTactttaattaaaaaaaacatttacccaATAAAATAAGAAAACCTA
>TU152092
TATTCTGCGGCTGACAGGATCAGAGGGCACTGCTGCGGAGCCCATGCAGCGCCAGTCCATGGACAAATCTGGCTCATCTCTAGCCTACAGACCTGCCTTTATCGACTAGGGAATCAAACACGCAAAGTGATTCTTCTTTGCCTTGGTATACAGTAGAAGCCCTGACTGAGATGTATGGACAGAACCCTAACTGGTTGTGGTCGAACGGAGCGCCTCTACGCCACCAAGGGCACCTGGGCAGACTTGGCTCAGCAACCCTGAGGCAatgggaggatgaggaagaaggAAAAGAGGAAGAACATGCAATTTGGACCAGGGAGCACCCAGCAATCTGTTGCTATTCTACAAGTAAGAGTGAGGTGTATGAGGTAACTGTGAGAGAATATTGCTGGCTCATTGCAAAATAGTACAGGGGACTCTTTCATTGTTTGTCTGTTTCAACCCTGTTTTTCCTGTTTTAGGTTTGTTTTCAAGTGGCATGCCTTGTTGTCTTGGGGTAAACAGGGTTTATGCTGGTTTGTATcaattaacattatgttttccCAATGGTGCTATTCTGGTTTTGCTTACCTACCACTCCCTCAGTGCTTGCCAGTGTGGCCAGATGACTTGTGACTAAGAGCCTTGCCCAAACTCAGCAGGCCCATTGGCAGGCCAAAGAGACAGCAGGACCAAACACGTGATACAACGACAGACTGCAACAGAACAGCATCCAACCTTCCATCATCCCTTCTCACCACACCTCACTGTTATCGCTCCTCCATCTCATCCCTTCCCCTCCTATCTCTTTATCCACGTTTCAGTCTTCATCTCCCCTATTCCCATTTTTTTGTATGCTCATTAAAGTGCCATCCAACATATAGACATAATGCCATTTGCTTGGTTTCTCCATTCACATGAATCCCTTTAGACATCATCAGTGGTATGAACAGAATAGCTTTTTGTCAAATGTTCTTaggttctctccttctctcctctgtcccctgtgTCTTCAGATGGCCATGGTCTCACCCAAGAGTGTGTTCAGAACCACTGGGGCTGGGCTGGTACCGAGAGTCCCTTTGGCCCTGTCCACACAGACCTAGTTAGCATCCAAAGCCAGAGTGACACAGGGCTAGATGCCCCTGAAATGTGGATGGATGTCCCCCCACACCAGCCCTCCTTGGGTGGTGCTGATGGAGAAGAATCATCCCAGCATTTTTTAGACAGTCAATGGGGGAGCCACAGGACAGAGGGCCATGGCTGTGCTTGTGTGCATGGACCAAGTGAACCAGGAAGATGTTGCCACAGTTGTGCTGGTTCCCCTCTCTTCAATTTCAGAATGAGGAAGACAATAATGGTAGGAGTCGAGGTGGAAATAGTGGAGGAAGTAGCCTATGAGGACACAGAGACACTTGAAGTAATGAGTCTATCCAAATTATTTGATGGAAACCATTTTGCTGCACGATGACCAGCTTTTCCCCACCTAAACCTGCATTCCTTCAAAAGTTGTTTGAAAAGGGAACTTTGTGTTTTTAAATGTCAG

Function

NR:

description
uncharacterized protein LOC110486868 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558703.2 False 1259 mRNA 0.44 5 31196917 31199220
XM_021558711.2 False 1253 mRNA 0.44 5 31196917 31199220
XM_036945637.1 False 1313 mRNA 0.44 6 31196917 31199220
XM_036945651.1 False 1307 mRNA 0.44 6 31196917 31199220
XR_005036345.1 False 1273 mRNA 0.44 5 31196917 31199220
XM_036945646.1 False 1245 mRNA 0.44 6 31196917 31199241
TU152092 True 1525 TUCP 0.48 3 31197073 31198812

Neighbor

gene id symbol gene type direction distance location
LOC110486852 LOC106605360 coding downstream 742 31192419 ~ 31196292 (-)
LOC110486838 LOC106605362 coding downstream 5445 31180009 ~ 31191472 (-)
LOC110486829 LOC100136479 coding downstream 21387 31172967 ~ 31175530 (-)
LOC110486775 LOC106605366 coding downstream 43100 31151553 ~ 31153817 (-)
LOC110486768 NA coding downstream 66196 31128831 ~ 31130721 (-)
herpud2 LOC106605359 coding upstream 32112 31231353 ~ 31248873 (-)
pkdc LOC106605355 coding upstream 98892 31298133 ~ 31299976 (-)
LOC110486940 LOC106605354 coding upstream 118364 31317605 ~ 31352632 (-)
LOC110486970 metl6 coding upstream 158593 31357834 ~ 31360219 (-)
LOC110486958 LOC106605352 coding upstream 167088 31366329 ~ 31388549 (-)
G132020 NA non-coding downstream 21497 31151591 ~ 31175420 (-)
G131723 NA non-coding downstream 95172 31100979 ~ 31101745 (-)
G131712 NA non-coding downstream 278478 30915338 ~ 30918439 (-)
G131663 NA non-coding downstream 381055 30814673 ~ 30815862 (-)
G132066 NA non-coding upstream 163 31199404 ~ 31202388 (-)
G132075 NA non-coding upstream 26017 31225258 ~ 31225789 (-)
G132055 NA non-coding upstream 29710 31228951 ~ 31229522 (-)
G132053 NA non-coding upstream 56673 31255914 ~ 31258119 (-)
G132090 NA non-coding upstream 69934 31269175 ~ 31269380 (-)
trnae-cuc LOC106605367 other downstream 297353 30897026 ~ 30899564 (-)
c2h8orf37 cssa05h8orf37 other downstream 300934 30889693 ~ 30896340 (-)
LOC110486376 LOC106605451 other downstream 1318349 29859575 ~ 29878744 (-)
LOC110534614 LOC106605399 other downstream 2719086 28475823 ~ 28533709 (-)
G132197 NA other upstream 336806 31536047 ~ 31543009 (-)
LOC110486999 prdm1 other upstream 436079 31631886 ~ 31648795 (-)
LOC110514821 NA other upstream 1539588 32738829 ~ 32756992 (-)
G134102 NA other upstream 1548967 32748208 ~ 32788121 (-)
LOC110487618 LOC100380645 other upstream 2013423 33208500 ~ 33225125 (-)

Expression


Co-expression Network