sri (sorcn)


Basic Information

Item Value
gene id sri
gene name sorcn
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31199335 ~ 31202392 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933421.1
GCGTGAATGAAACATAAAATACTGGAATGTGCCTGGAATATACCATTTACTTCCTCGAGTGTTCATTTCATTTTAGCAAAACATACTCTGAAATGAGTTATCCTGGATATGGTGCTCCCGCAGGCGGATACCCAGGAGGGtATGGAGGTGCCCCTGCTGGTGGCCACCCCCCTGGTGGACCTGGCTTTGGAGGATACCCTGGTCAGCAGCAAGACCCTCTCTATGGATATTTTGCTGCTGTTGCAGGCCAGGATGGGCACATATCAGCGGAAGAGCTCCAGCAATGCCTCACACAGGCTAACTTCTCTGGTGGCTACAAACCTTTTAACCTGGAGACCTGCAGACTGATGATCAACATGCTGGATAGAGACATGTCATGTACTATGGGCTTCAACGAGTTCAAGGAGCTGTGGACCGTGCTCAATGGCTGGAAGCAGCACTTCATGTCCATTGATCGTGACCAGAGTGGGACCGTGGACCCCCAGGAGATGCACCAGGCAGTCACTTCCATGGGCTACAGACTGAGCCCACAAGCCATGAACTGCATCATCAAGAGATTCAGTTCTCAGGGGAAGATCACCTTTGATGACTACGTAGCTTGTTGTGTGAAACTCAGAACCCTGACTGATTTGTTCCGAAAGCGGGACCAAGCTGGACAGGGAATGGCCACATTTCCATACGATGATttcatccAGTGCACGATGAGCACATGAAGAGACAGAGCAGAAAAACATCTGAGGGACTACCTCTTAACTCCCAtaatatttacaatttagcatgTGTAAAAATTAATTCTGACATGTATTTTTGATACTCACAAATCGCTTGCATTTTTTGATTGCTTTTATACAAACATGACTAAATAGGAAGTTTTGAAATAGGAAGTTGCTATAAAATTGTAACATTACCTTAGGAAACTGGAATATTTGCCAACTTTAACCACTAGGTGTGCCTATAAACCCGTGTCACCACTGCATGTTCTGTATATTATGTCACTGTTGAAAGTCTTTACTATTCATCATGATAATCAATATATCCCTAAATATAGCTGGGAGTAATTTTgtctgtatgtgaaagagagtAATAAACACAACCATATATGTGGAATACA
>XM_021617743.2
TCTATTCAACTACATCCACTCTTTTACTCCAAATAAAGGTTCCCAAAGACAACAGCTTAGAACTCAAATTCATCCCTCCCATTGCTTATTGTAAAGCAGGACAGCCGACACTCCCCTTGTGTGTCAAGAAGGGCAAGTCGTGGAAGTGGATACTTTATTGCCAGTTGGTTTCACAGTCTTATTCTTTTCATTCATAGAAATGAGTTATCCTGGATATGGTGCTCCCGCAGGCGGATACCCAGGAGGGtATGGAGGTGCCCCTGCTGGTGGCCACCCCCCTGGTGGACCTGGCTTTGGAGGATACCCTGGTCAGCAGCAAGACCCTCTCTATGGATATTTTGCTGCTGTTGCAGGCCAGGATGGGCACATATCAGCGGAAGAGCTCCAGCAATGCCTCACACAGGCTAACTTCTCTGGTGGCTACAAACCTTTTAACCTGGAGACCTGCAGACTGATGATCAACATGCTGGATAGAGACATGTCATGTACTATGGGCTTCAACGAGTTCAAGGAGCTGTGGACCGTGCTCAATGGCTGGAAGCAGCACTTCATGTCCATTGATCGTGACCAGAGTGGGACCGTGGACCCCCAGGAGATGCACCAGGCAGTCACTTCCATGGGCTACAGACTGAGCCCACAAGCCATGAACTGCATCATCAAGAGATTCAGTTCTCAGGGGAAGATCACCTTTGATGACTACGTAGCTTGTTGTGTGAAACTCAGAACCCTGACTGATTTGTTCCGAAAGCGGGACCAAGCTGGACAGGGAATGGCCACATTTCCATACGATGATttcatccAGTGCACGATGAGCACATGAAGAGACAGAGCAGAAAAACATCTGAGGGACTACCTCTTAACTCCCAtaatatttacaatttagcatgTGTAAAAATTAATTCTGACATGTATTTTTGATACTCACAAATCGCTTGCATTTTTTGATTGCTTTTATACAAACATGACTAAATAGGAAGTTTTGAAATAGGAAGTTGCTATAAAATTGTAACATTACCTTAGGAAACTGGAATATTTGCCAACTTTAACCACTAGGTGTGCCTATAAACCCGTGTCACCACTGCATGTTCTGTATATTATGTCACTGTTGAAAGTCTTTACTATTCATCATGATAATCAATATATCCCTAAATATAGCTGGGAGTAATTTTgtctgtatgtgaaagagagtAATAAACACAACCATATATGTGGAATACA
>NM_001165117.2
ATTGCTTATTGTAAAGCAGGACAGCCGACACTCCCCTTGTGTGTCAAGAAGGGCAAGTCGTGGAAGTGGATACTTTATTGCCAGTTGGTTTCACAGTCTTATTCTTTTCATTCATAGAAATGAGTTATCCTGGATATGGTGCTCCCGCAGGCGGATACCCAGGAGGGtATGGAGGTGCCCCTGCTGGTGGCCACCCCCCTGGTGGACCTGGCTTTGGAGGATACCCTGGTCAGCAGCAAGACCCTCTCTATGGATATTTTGCTGCTGTTGCAGGCCAGGATGGGCACATATCAGCGGAAGAGCTCCAGCAATGCCTCACACAGGCTAACTTCTCTGGTGGCTACAAACCTTTTAACCTGGAGACCTGCAGACTGATGATCAACATGCTGGATAGAGACATGTCATGTACTATGGGCTTCAACGAGTTCAAGGAGCTGTGGACCGTGCTCAATGGCTGGAAGCAGCACTTCATGTCCATTGATCGTGACCAGAGTGGGACCGTGGACCCCCAGGAGATGCACCAGGCAGTCACTTCCATGGGCTACAGACTGAGCCCACAAGCCATGAACTGCATCATCAAGAGATTCAGTTCTCAGGGGAAGATCACCTTTGATGACTACGTAGCTTGTTGTGTGAAACTCAGAACCCTGACTGTTTATCTCTGTATGTTTGCTACAGATTTGTTCCGAAAGCGGGACCAAGCTGGACAGGGAATGGCCACATTTCCATACGATGATttcatccAGTGCACGATGAGCACATGAAGAGACAGAGCAGAAAAACATCTGAGGGACTACCTCTTAACTCCCAtaatatttacaatttagcatgTGTAAAAATTAATTCTGACATGTATTTTTGATACTCACAAATCGCTTGCATTTTTTGATTGCTTTTATACAAACATGACTAAATAGGAAGTTTTGAAATAGGAAGTTGCTATAAAATTGTAACATTACCTTAGGAAACTGGAATATTTGCCAACTTTAACCACTAGGTGTGCCTATAAACCCGTGTCACCACTGCATGTTCTGTATATTATGTCACTGTTGAAAGTCTTTACTATTCATCATGATAATCAATATATCCCTAAATATAGCTGGGAGTAATTTTgtctgtatgtgaaagagagtAATAAACACAACCATATATGTG

Function

NR:

description
sorcin

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23924 SRI; sorcin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933421.1 False 1111 mRNA 0.44 9 31199335 31202392
XM_021617743.2 False 1218 mRNA 0.44 8 31199446 31202392
NM_001165117.2 True 1155 mRNA 0.44 8 31199526 31202385
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110486784 NA coding upstream 52881 31136808 ~ 31146454 (+)
LOC110534689 LOC106605368 coding upstream 307949 30873733 ~ 30891386 (+)
LOC110534679 LOC106605381 coding upstream 343289 30851297 ~ 30856046 (+)
plekhf2 plekhf2 coding upstream 355036 30821776 ~ 30844299 (+)
LOC110486724 LOC106581338 coding upstream 391369 30798780 ~ 30807966 (+)
LOC110486889 NA coding downstream 6593 31208985 ~ 31222079 (+)
mxtx2 NA coding downstream 54125 31255824 ~ 31261130 (+)
LOC110534710 LOC106605356 coding downstream 59662 31262054 ~ 31294577 (+)
LOC110486933 can7 coding downstream 97610 31300002 ~ 31315913 (+)
eaf1 LOC106581241 coding downstream 158016 31360408 ~ 31366322 (+)
G131777 NA non-coding upstream 3612 31195378 ~ 31195723 (+)
G131773 NA non-coding upstream 11020 31188008 ~ 31188315 (+)
G131731 LOC100136479 non-coding upstream 23357 31106841 ~ 31175978 (+)
G131742 NA non-coding upstream 74691 31116142 ~ 31124644 (+)
G131721 NA non-coding upstream 98370 31100748 ~ 31100965 (+)
G131782 NA non-coding downstream 5584 31207976 ~ 31208235 (+)
G131794 NA non-coding downstream 25781 31228173 ~ 31228578 (+)
G131813 NA non-coding downstream 47227 31249619 ~ 31249833 (+)
G131815 NA non-coding downstream 49866 31252258 ~ 31252469 (+)
G131517 ccne2 other upstream 449381 30748055 ~ 30749954 (+)
G131491 NA other upstream 498712 30700182 ~ 30700623 (+)
G130414 NA other upstream 1409504 29789576 ~ 29789831 (+)
LOC110486279 LOC106605442 other upstream 1505484 29685855 ~ 29697686 (+)
G130308 NA other upstream 1558239 29600026 ~ 29641096 (+)
G132342 LOC100136303 other downstream 655256 31834170 ~ 31887572 (+)
G133473 LOC106605294 other downstream 1965046 33167438 ~ 33169378 (+)
G133663 LOC106605282 other downstream 2294062 33496454 ~ 33497285 (+)

Expression

sri(sorcn) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
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sri(sorcn) Expression in each Bioproject

Bar chart with 21 bars.
sri(sorcn) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
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Co-expression Network