LOC110486889


Basic Information

Item Value
gene id LOC110486889
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31208985 ~ 31222079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558742.2
CCCACTTGAATATTCTACAGCAAAGCAGTGCACTCCAGAAATACATATTAGGTCGGCTCTCCAAACCATTTTGGATTCATTTGATCAGCATTTAGGAAACTTTGAGGTTAGCTACTACTGTAGTTGTTATTACAGCACAGGGTCATGGAGACTTGGGTCCTGTTGGTCTTCAGATTGTTGCTCTTTGTGCAGGCTGCACACAGCAAGCAGTCCTGCCATCCAGTGACCGTGGACTTTTGTCAAGATGTTGGTTACAACACGACCATCAATCCAACCCGCCAAACCAGGGGCTACGACCTGAGGCAGCTTCGTCAGATCGTGAAGACTGGCTGCTCTCCAGAGGTCACAGTTTTCCTATGTGGCGTTGTTTCACCTGAGTGTGTGTTGGATGACAAGATTCCACCCTGCAGTTGGCTCTGTGAGAGGGTGAAGAATGAATGTGAGCCTGTTCTAAGAGAGAAGGGTCTAAACTGGCCAGAGAAGATCAGATGTGAGGCTTACCCCAAACAATCCTGTGCCAACGGCCAAGAGAGTATCCCTGCACCAAACCCTGCAGGAACCTGTGAGCCAATCATCATCCCTCTCTGCAAGGACCTGCCCTACAAGGACACTATAATGCCCAACCTATTAAACCACTCCACACAGGAGGTCGCTGGTTTAGAATTGTATCAGTTTTACCCTCTGGTAAAGGTGCAGTGTTCTCCTCACCTTCAGGCTTTCCTGTGCTCCGTCTACACTCCAGAGTGTGTTTCAGGGAAAGCCCGCCCACCCTACAGAGCTCTGTGTGAGCTAGCCAGAAAGGACTGTGAGGTGCTAATGAACAAGTTTGGTTTTCAGTGGCCCAGTCAGTTTGAGTGTGACACCTTCGCAACGGAATCTTGTGAACATTGTGGGGTGACCAGTGCTCCGTCCCCTGAGGGCCCCTGCCAGCCAATCACCATTCCACTGTGCCAGGGCATCTCCTACAACCTGACGGCCATGCCAAATCTGCTGGGGCACAAAAAACAGGCGGAGGCGGCCGTTAAGATGGCTCAAATGGAGTATGTTTTGAAATTGACTTGTTCTGTGGATATCCGCTTCTTTCTGTGTTCTGTCTACGCTCCCCAGTGTGTGGAAGGGGAGGTGCAGCGCCCTTGCAGATCCCTTTGTGAGAGAGCCAAACTGGGGTGTGACAGTGTGTTGAATAAGTTTGGGATGTCCTGGCCTGATGATCTGAGCTGTGAATCCTTTCCAGAGGAGTCATGCGTAAGAGGGGACAGTAATCCCGAGCAACTCACGGCTGAGGAACTCCTGGTCAAGCTGAAAGAACTTGGTCACTCTGTTCGGGACCAATCACTAAGTCTTCAAACTGCCCACATATTGTTGGTTCTAGAAGATAAAGACAAATCAGGCAAACTGGATGTGAAAGAATTCCACAACCTAAAGCACTATGTGTCTGTTACCAAGAGAGAGTACTCAGAGTCCTATGAGTGGCAGAACCCAGGGTTCGTCACAGAATACCAGATGAAGAATGCCCTTGATGTCCGTGATCTTAGTTTGGACGATGAAACGTTCCAAACACTATGGCACCGGTACAGCTCTGGTGGAGGGATCAAATACGATGACTTTATGGCCATTCTCACAAGGCTCAAGATCCTGAAGGCTCGCTTTAAATCCCGACTCATTTCACCCTGTGATGCTGCAACAGACTGTGAGGTCGCCAGTTTCTCCTTCAGTCAGTTAATCCAAGTTACCATTATGTAGGCCAGCGGCAGCTGTCCAGTCACCAGCAGGAGTTCAATTGACCTGGAATGCAAAGCAATGCAGTAACCTGTTTTGGaccaaaaaaacaacattctACTGCCTTTTAGTACATACCTGTCAAAAATGATTGTCATAGTGCTGTATAATTTGTGACTGATGTCCACCTGAATATGATGGCTGTTTCCTCCTGGTCTGTTTGAATCTCTTTCTGTACATTTTCTTGCTACATTGTTTATAACACATTTACACACATATTTTGTTGGACTCAGTATTCTATCTTGCTTGTCAGTTAAACAACAAGACTAGAGACTTTCTTCTCCATATCGTCATTTTTTCTTAAACTTTTATCCCatgtttctttttctttcttttgtcTGTATACTGTCATTCAGCCTTTAGCTGCAGAGTTGTACAAGACAGCCTAACTAATAAAATATATGCCCTGGCGGATattca
>XM_021558750.2
CCCACTTGAATATTCTACAGCAAAGCAGTGCACTCCAGAAATACATATTAGGTCGGCTCTCCAAACCATTTTGGATTCATTTGATCAGCATTTAGGAAACTTTGAGGTTAGCTACTACTGTAGTTGTTATTACAGCACAGGGTCATGGAGACTTGGGTCCTGTTGGTCTTCAGATTGTTGCTCTTTGTGCAGGCTGCACACAGCAAGCAGTCCTGCCATCCAGTGACCGTGGACTTTTGTCAAGATGTTGGTTACAACACGACCATCAATCCAACCCGCCAAACCAGGGGCTACGACCTGAGGCAGCTTCGTCAGATCGTGAAGACTGGCTGCTCTCCAGAGGTCACAGTTTTCCTATGTGGCGTTGTTTCACCTGAGTGTGTGTTGGATGACAAGATTCCACCCTGCAGTTGGCTCTGTGAGAGGGTGAAGAATGAATGTGAGCCTGTTCTAAGAGAGAAGGGTCTAAACTGGCCAGAGAAGATCAGATGTGAGGCTTACCCCAAACAATCCTGTGCCAACGGCCAAGAGAGTATCCCTGCACCAAACCCTGCAGGAACCTGTGAGCCAATCATCATCCCTCTCTGCAAGGACCTGCCCTACAAGGACACTATAATGCCCAACCTATTAAACCACTCCACACAGGAGGTCGCTGGTTTAGAATTGTATCAGTTTTACCCTCTGGTAAAGGTGCAGTGTTCTCCTCACCTTCAGGCTTTCCTGTGCTCCGTCTACACTCCAGAGTGTGTTTCAGGGAAAGCCCGCCCACCCTACAGAGCTCTGTGTGAGCTAGCCAGAAAGGACTGTGAGGTGCTAATGAACAAGTTTGGTTTTCAGTGGCCCAGTCAGTTTGAGTGTGACACCTTCGCAACGGAATCTTGTGAACATTGTGGGGTGACCAGTGCTCCGTCCCCTGAGGGCCCCTGCCAGCCAATCACCATTCCACTGTGCCAGGGCATCTCCTACAACCTGACGGCCATGCCAAATCTGCTGGGGCACAAAAAACAGGCGGAGGCGGCCGTTAAGATGGCTCAAATGGAGTATGTTTTGAAATTGACTTGTTCTGTGGATATCCGCTTCTTTCTGTGTTCTGTCTACGCTCCCCAGTGTGTGGAAGGGGAGGTGCAGCGCCCTTGCAGATCCCTTTGTGAGAGAGCCAAACTGGGGTGTGACAGTGTGTTGAATAAGTTTGGGATGTCCTGGCCTGATGATCTGAGCTGTGAATCCTTTCCAGAGGAGTCATGCGTAAGAGGGGACAGTAATCCCGAGCAACTCACGGCTGAGGAACTCCTGGTCAAGCTGAAAGAACTTGGTCACTCTGTTCGGGACCAATATCTTAGTTTGGACGATGAAACGTTCCAAACACTATGGCACCGGTACAGCTCTGGTGGAGGGATCAAATACGATGACTTTATGGCCATTCTCACAAGGCTCAAGATCCTGAAGGCTCGCTTTAAATCCCGACTCATTTCACCCTGTGATGCTGCAACAGACTGTGAGGTCGCCAGTTTCTCCTTCAGTCAGTTAATCCAAGTTACCATTATGTAGGCCAGCGGCAGCTGTCCAGTCACCAGCAGGAGTTCAATTGACCTGGAATGCAAAGCAATGCAGTAACCTGTTTTGGaccaaaaaaacaacattctACTGCCTTTTAGTACATACCTGTCAAAAATGATTGTCATAGTGCTGTATAATTTGTGACTGATGTCCACCTGAATATGATGGCTGTTTCCTCCTGGTCTGTTTGAATCTCTTTCTGTACATTTTCTTGCTACATTGTTTATAACACATTTACACACATATTTTGTTGGACTCAGTATTCTATCTTGCTTGTCAGTTAAACAACAAGACTAGAGACTTTCTTCTCCATATCGTCATTTTTTCTTAAACTTTTATCCCatgtttctttttctttcttttgtcTGTATACTGTCATTCAGCCTTTAGCTGCAGAGTTGTACAAGACAGCCTAACTAATAAAATATATGCCCTGGCGGATattca

Function

NR:

description
uncharacterized protein LOC110486889 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558742.2 False 2199 mRNA 0.47 10 31208985 31222079
XM_021558750.2 True 2004 mRNA 0.47 8 31208985 31222079

Neighbor

gene id symbol gene type direction distance location
sri sorcn coding upstream 6593 31199335 ~ 31202392 (+)
LOC110486784 NA coding upstream 62531 31136808 ~ 31146454 (+)
LOC110534689 LOC106605368 coding upstream 317599 30873733 ~ 30891386 (+)
LOC110534679 LOC106605381 coding upstream 352939 30851297 ~ 30856046 (+)
plekhf2 plekhf2 coding upstream 364686 30821776 ~ 30844299 (+)
mxtx2 NA coding downstream 34438 31255824 ~ 31261130 (+)
LOC110534710 LOC106605356 coding downstream 39975 31262054 ~ 31294577 (+)
LOC110486933 can7 coding downstream 77923 31300002 ~ 31315913 (+)
eaf1 LOC106581241 coding downstream 138329 31360408 ~ 31366322 (+)
LOC110486995 atg5 coding downstream 367395 31589474 ~ 31624014 (+)
G131782 NA non-coding upstream 750 31207976 ~ 31208235 (+)
G131777 NA non-coding upstream 13262 31195378 ~ 31195723 (+)
G131773 NA non-coding upstream 20670 31188008 ~ 31188315 (+)
G131731 LOC100136479 non-coding upstream 33007 31106841 ~ 31175978 (+)
G131742 NA non-coding upstream 84341 31116142 ~ 31124644 (+)
G131794 NA non-coding downstream 6094 31228173 ~ 31228578 (+)
G131813 NA non-coding downstream 27540 31249619 ~ 31249833 (+)
G131815 NA non-coding downstream 30179 31252258 ~ 31252469 (+)
G131517 ccne2 other upstream 459031 30748055 ~ 30749954 (+)
G131491 NA other upstream 508362 30700182 ~ 30700623 (+)
G130414 NA other upstream 1419154 29789576 ~ 29789831 (+)
LOC110486279 LOC106605442 other upstream 1515134 29685855 ~ 29697686 (+)
G130308 NA other upstream 1567889 29600026 ~ 29641096 (+)
G132342 LOC100136303 other downstream 635569 31834170 ~ 31887572 (+)
G133473 LOC106605294 other downstream 1945359 33167438 ~ 33169378 (+)
G133663 LOC106605282 other downstream 2274375 33496454 ~ 33497285 (+)

Expression


Co-expression Network