herpud2 (LOC106605359)


Basic Information

Item Value
gene id herpud2
gene name LOC106605359
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31231353 ~ 31248873 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945709.1
GGAGCAGTTGACAGTCCTGTCACCTTAGTCATCAAGGCCCCCAACCAGAAGTATGACGACCAGACAATAAACTGTTTTCTCAACTGGACGGTAGAGAAACTGAAGAGTCACATCTCGAATGTGTACCCAAGCAAGCCGGCTTTCTCAGAATGACTGTTGTGTTGTTTTAGTCATCCAAGGATCAGCGGCTGGTATACTCAGGCCATCTCCTCCAGGACCACCTGCAACTGAGGGATGTCCTCAGGAAGCAGGAGGGTTATCACATGATGCACCTGGTGTGTGCCTCCCGTAGCCCGCCAACCTCGCCCACGCCCCACTGCTCCACCCCCAGCTCGGTGACCTCTGACCCCAGCTCCAGCTCTGGGAGTTCAGACAGTGCTGGCTCCACCCCCCAAGCCACAACACCAAATCAGGACGGTCAGTCCGCTGCCTCAGTAGCAGGAAGTTATGATGGACTAAGGCATCGTGGAGGCTTCCCCCAATTTAACCCTCAAAATCCTACCTCTACTGGTATAATGCAATGGCCAGATGGAACGCAGGTCCCAGTACAGGGGGGTATGGCTGCAGGTGTGCCCCCCCACCCCATGTACATGCCCATGCAGGTCCTCTGGTGGCAGCAAATGTATGCACGCCACTACTACATGCAATAtcAAGCAGCAGTGGCAGCCTCACagcccccctccacccctccctcctcccccagtcCCACCCACTCCCCCCAACCCGCACAGCCCAATGAAGCTCCACCTCCCCTGGGACCTAACCCCATTCAAGAGGACAGGCCGGCCAATCCCAATATCCAGATGAATGCCCAGGGCGGGGCCGTGCTAAATGAGGATGAACTGAACCGGGATTGGCTGGACTGGATGTACGCGGTCTCCCGCGCTGCCATCTTGCTCAGCATTGTGTATTTctactcctcctttggccgcttCGTCATGGTGATAGGCGCCATGCTGCTCGTCTTTTTGCACAGGGCTGGTTGGTTCCCCTTTAGGCCAGAGCTGCAGAACCCCGGAGTAGGAGGAGCGGGGTTAGCTCATCAGGACGAGGCAGAGAGACACCAGGACATCCAGGAGATGGAGCGGATGATGGATGAAGggctggaggatgaggagggcgACAGTGGAGAGGAAGGCCCAGAGGACCCGGCAGCTCCCGCTGCCCCCCGCCACCACGGCTTCCTGGCCTCCGCCTGGTCCTTCATCAGCACCTTCTTCACCTCCCTCATCCCAGAGGGACCCCCCCACCCCGCCAACTAAATCAGGGAGGGAGACCCCACCCCCCAGTAACAACCTCCCATGCTGCCAACTACCAGACTGTAAAAAGTGCTGCAGTGTGGGGGAAGTCTAGAATAAATCAGTGAGCATCGAACAAACTAACATGTTATGCCATGTTAAACAAGCTAACAATGCTTTATATTACAGAGGCTCTGATTTCGTCATACAaaccggtacacacacacactttattaccTTTGATCATGTCTGCTGATTTTGATTTTGGTGGCATTGAAAGGCCTCGAAAGGTCATCCATTGTAAGCAGTGATACAGCCATTGCATTTATCGTTTTGGTTTTGGAGAATAGATGAAAGGACATATACACCTAAATGTGTATGAATATTGCAATGACTCTAGCACATTGATTATCTCTGTGTATATGAGCATGATCtatttacatataaatatatacatcttAATTCCTGACAAAATGCGTTTTTGAATAAAAGCCTTGtggtttcgtg
>XM_021558762.2
CTGTCAATGGAATATTATGACGTAGTTTCCGGTATCACGCCCGACTCACCAAAAAAAAACTGTCGAACTGGGAAGGAGCAGTCAAAAGGGGTCGAAAATACTCAAATAATCTAAAAACCCCAAGAAACATAGCTGCTTCACTCTCCACCAGGATTACATCGTGATTGGACACAGAACCATCTCCCCGCCAATGACAGCTCTTTAGAGGGGAAAATACCCTGTCCACCACAGTCATTGGCTGAGCTGGACTTGAGATCACAATGATGAAGAGGATCTGAGGGAGTCTTCCTCCTCAGGTGTAGGAGGCGAGCCCTGTCCTTTCCCATCCCCTTGACACACCCATTAATATGAACCATGGACCCAGGAGCAGTTGACAGTCCTGTCACCTTAGTCATCAAGGCCCCCAACCAGAAGTATGACGACCAGACAATAAACTGTTTTCTCAACTGGACGGTAGAGAAACTGAAGAGTCACATCTCGAATGTGTACCCAAGCAAGCCGTCATCCAAGGATCAGCGGCTGGTATACTCAGGCCATCTCCTCCAGGACCACCTGCAACTGAGGGATGTCCTCAGGAAGCAGGAGGGTTATCACATGATGCACCTGGTGTGTGCCTCCCGTAGCCCGCCAACCTCGCCCACGCCCCACTGCTCCACCCCCAGCTCGGTGACCTCTGACCCCAGCTCCAGCTCTGGGAGTTCAGACAGTGCTGGCTCCACCCCCCAAGCCACAACACCAAATCAGGACGGTCAGTCCGCTGCCTCAGTAGCAGGAAGTTATGATGGACTAAGGCATCGTGGAGGCTTCCCCCAATTTAACCCTCAAAATCCTACCTCTACTGGTATAATGCAATGGCCAGATGGAACGCAGGTCCCAGTACAGGGGGGTATGGCTGCAGGTGTGCCCCCCCACCCCATGTACATGCCCATGCAGGTCCTCTGGTGGCAGCAAATGTATGCACGCCACTACTACATGCAATAtcAAGCAGCAGTGGCAGCCTCACagcccccctccacccctccctcctcccccagtcCCACCCACTCCCCCCAACCCGCACAGCCCAATGAAGCTCCACCTCCCCTGGGACCTAACCCCATTCAAGAGGACAGGCCGGCCAATCCCAATATCCAGATGAATGCCCAGGGCGGGGCCGTGCTAAATGAGGATGAACTGAACCGGGATTGGCTGGACTGGATGTACGCGGTCTCCCGCGCTGCCATCTTGCTCAGCATTGTGTATTTctactcctcctttggccgcttCGTCATGGTGATAGGCGCCATGCTGCTCGTCTTTTTGCACAGGGCTGGTTGGTTCCCCTTTAGGCCAGAGCTGCAGAACCCCGGAGTAGGAGGAGCGGGGTTAGCTCATCAGGACGAGGCAGAGAGACACCAGGACATCCAGGAGATGGAGCGGATGATGGATGAAGggctggaggatgaggagggcgACAGTGGAGAGGAAGGCCCAGAGGACCCGGCAGCTCCCGCTGCCCCCCGCCACCACGGCTTCCTGGCCTCCGCCTGGTCCTTCATCAGCACCTTCTTCACCTCCCTCATCCCAGAGGGACCCCCCCACCCCGCCAACTAAATCAGGGAGGGAGACCCCACCCCCCAGTAACAACCTCCCATGCTGCCAACTACCAGACTGTAAAAAGTGCTGCAGTGTGGGGGAAGTCTAGAATAAATCAGTGAGCATCGAACAAACTAACATGTTATGCCATGTTAAACAAGCTAACAATGCTTTATATTACAGAGGCTCTGATTTCGTCATACAaaccggtacacacacacactttattaccTTTGATCATGTCTGCTGATTTTGATTTTGGTGGCATTGAAAGGCCTCGAAAGGTCATCCATTGTAAGCAGTGATACAGCCATTGCATTTATCGTTTTGGTTTTGGAGAATAGATGAAAGGACATATACACCTAAATGTGTATGAATATTGCAATGACTCTAGCACATTGATTATCTCTGTGTATATGAGCATGATCtatttacatataaatatatacatcttAATTCCTGACAAAATGCGTTTTTGAATAAAAGCCTTGtggtttcgtg
>XM_021558766.2
CTGTCAATGGAATATTATGACGTAGTTTCCGGTATCACGCCCGACTCACCAAAAAAAAACTGTCGAACTGGGAAGGAGCAGTCAAAAGGGGTCGAAAATACTCAAATAATCTAAAAACCCCAAGAAACATAGCTGCTTCACTCTCCACCAGGATTACATCGTGATTGGACACAGAACCATCTCCCCGCCAATGACAGCTCTTTAGAGGGGAAAATACCCTGTCCACCACAGTCATTGGCTGAGCTGGACTTGAGATCACAATGATGAAGAGGATCTGAGGGAGTCTTCCTCCTCAGGTGTAGGAGGCGAGCCCTGTCCTTTCCCATCCCCTTGACACACCCATTAATATGAACCATGGACCCAGGAGCAGTTGACAGTCCTGTCACCTTAGTCATCAAGGCCCCCAACCAGAAGTATGACGACCAGACAATAAACTGTTTTCTCAACTGGACGGTAGAGAAACTGAAGAGTCACATCTCGAATGTGTACCCAAGCAAGCCGTCATCCAAGGATCAGCGGCTGGTATACTCAGGCCATCTCCTCCAGGACCACCTGCAACTGAGGGATGTCCTCAGGAAGAGTTCAGACAGTGCTGGCTCCACCCCCCAAGCCACAACACCAAATCAGGACGGTCAGTCCGCTGCCTCAGTAGCAGGAAGTTATGATGGACTAAGGCATCGTGGAGGCTTCCCCCAATTTAACCCTCAAAATCCTACCTCTACTGGTATAATGCAATGGCCAGATGGAACGCAGGTCCCAGTACAGGGGGGTATGGCTGCAGGTGTGCCCCCCCACCCCATGTACATGCCCATGCAGGTCCTCTGGTGGCAGCAAATGTATGCACGCCACTACTACATGCAATAtcAAGCAGCAGTGGCAGCCTCACagcccccctccacccctccctcctcccccagtcCCACCCACTCCCCCCAACCCGCACAGCCCAATGAAGCTCCACCTCCCCTGGGACCTAACCCCATTCAAGAGGACAGGCCGGCCAATCCCAATATCCAGATGAATGCCCAGGGCGGGGCCGTGCTAAATGAGGATGAACTGAACCGGGATTGGCTGGACTGGATGTACGCGGTCTCCCGCGCTGCCATCTTGCTCAGCATTGTGTATTTctactcctcctttggccgcttCGTCATGGTGATAGGCGCCATGCTGCTCGTCTTTTTGCACAGGGCTGGTTGGTTCCCCTTTAGGCCAGAGCTGCAGAACCCCGGAGTAGGAGGAGCGGGGTTAGCTCATCAGGACGAGGCAGAGAGACACCAGGACATCCAGGAGATGGAGCGGATGATGGATGAAGggctggaggatgaggagggcgACAGTGGAGAGGAAGGCCCAGAGGACCCGGCAGCTCCCGCTGCCCCCCGCCACCACGGCTTCCTGGCCTCCGCCTGGTCCTTCATCAGCACCTTCTTCACCTCCCTCATCCCAGAGGGACCCCCCCACCCCGCCAACTAAATCAGGGAGGGAGACCCCACCCCCCAGTAACAACCTCCCATGCTGCCAACTACCAGACTGTAAAAAGTGCTGCAGTGTGGGGGAAGTCTAGAATAAATCAGTGAGCATCGAACAAACTAACATGTTATGCCATGTTAAACAAGCTAACAATGCTTTATATTACAGAGGCTCTGATTTCGTCATACAaaccggtacacacacacactttattaccTTTGATCATGTCTGCTGATTTTGATTTTGGTGGCATTGAAAGGCCTCGAAAGGTCATCCATTGTAAGCAGTGATACAGCCATTGCATTTATCGTTTTGGTTTTGGAGAATAGATGAAAGGACATATACACCTAAATGTGTATGAATATTGCAATGACTCTAGCACATTGATTATCTCTGTGTATATGAGCATGATCtatttacatataaatatatacatcttAATTCCTGACAAAATGCGTTTTTGAATAAAAGCCTTGtggtttcgtg

Function

NR:

description
homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945709.1 False 1745 mRNA 0.53 8 31231353 31247745
XM_021558762.2 False 2076 mRNA 0.52 9 31231353 31248873
XM_021558766.2 True 1959 mRNA 0.51 8 31231353 31248873

Neighbor

gene id symbol gene type direction distance location
LOC110486868 LOC106605361 coding downstream 32112 31196917 ~ 31199241 (-)
LOC110486852 LOC106605360 coding downstream 35178 31192419 ~ 31196292 (-)
LOC110486838 LOC106605362 coding downstream 39881 31180009 ~ 31191472 (-)
LOC110486829 LOC100136479 coding downstream 55823 31172967 ~ 31175530 (-)
LOC110486775 LOC106605366 coding downstream 77536 31151553 ~ 31153817 (-)
pkdc LOC106605355 coding upstream 49260 31298133 ~ 31299976 (-)
LOC110486940 LOC106605354 coding upstream 68732 31317605 ~ 31352632 (-)
LOC110486970 metl6 coding upstream 108961 31357834 ~ 31360219 (-)
LOC110486958 LOC106605352 coding upstream 117456 31366329 ~ 31388549 (-)
LOC118936732 bbs9 coding upstream 226021 31474894 ~ 31567154 (-)
G132055 NA non-coding downstream 1831 31228951 ~ 31229522 (-)
G132075 NA non-coding downstream 5564 31225258 ~ 31225789 (-)
G132066 NA non-coding downstream 28965 31199404 ~ 31202388 (-)
G132020 NA non-coding downstream 55933 31151591 ~ 31175420 (-)
G132053 NA non-coding upstream 7041 31255914 ~ 31258119 (-)
G132090 NA non-coding upstream 20302 31269175 ~ 31269380 (-)
G132095 LOC106581260 non-coding upstream 23500 31272373 ~ 31275952 (-)
G132117 NA non-coding upstream 46715 31295588 ~ 31295950 (-)
G132118 NA non-coding upstream 48155 31297028 ~ 31297310 (-)
trnae-cuc LOC106605367 other downstream 331789 30897026 ~ 30899564 (-)
c2h8orf37 cssa05h8orf37 other downstream 335370 30889693 ~ 30896340 (-)
LOC110486376 LOC106605451 other downstream 1352785 29859575 ~ 29878744 (-)
G132197 NA other upstream 287174 31536047 ~ 31543009 (-)
LOC110486999 prdm1 other upstream 386447 31631886 ~ 31648795 (-)
LOC110514821 NA other upstream 1489956 32738829 ~ 32756992 (-)
G134102 NA other upstream 1499335 32748208 ~ 32788121 (-)
LOC110487618 LOC100380645 other upstream 1963791 33208500 ~ 33225125 (-)

Expression


Co-expression Network