LOC110534710 (LOC106605356)


Basic Information

Item Value
gene id LOC110534710
gene name LOC106605356
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31262054 ~ 31294577 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945726.1
GAAATGAACCTCCAACTCATTTGAGTCGCTATGCGTCAATACTTAAAACAAATTTACATTCTTAATCCTGTGTACCTAAGTTGCGTGCCTTTCTTAGTATTTCACAGTCCgtggttgtatttgattaacGTTTTATTAAAATGTATGGATTTCAGCAAGCAAAGGCACGCAACAACAAAGAATGCATAGGTTAATTTAAACATTTTGCACCGAGTGAGGTGTTCCTTCGCCATTTTAGCTGCCAGACATCTTGCATTTCCCAACATCTTTGCAGGAGCTAGTTATTTCTATTCGCCTTGGCCACTTGTAGAGGTAGTTGGCAGCGCATCACACATTGCGGCCAAAACAAAGATGTACACACATGCAAGATGCATTTCTCACTTGATATAAAACATGGATGTAATATCTTTCTGAATATTCTGTTTTTTTGGAGAACCATCTGTAACCAGACACAGACATTTTTAAGATACTTTTTTCACTGAAACGAGAACAAAGAAAGTATTGTCAAGGACAGAAAGGAGAAGATGGAGGGGAAGGAGCCAAAGAAGGAACAGAAGCGGCACCAGCAGAAGCACAGCGGGCCCAAGGCGGAGAGGAAGAAGAGCAGGAAGCAGCTGGGAACTCCTGCCGGAGATGACGAGCGCAAGAGGAACCCCAAAGCGTTTGTGGTCCAGTCAGCAATGCGCATGGCCAAAACCTTCCACAGaGCCCAGGACCTAAAGGCCAAGAAGCATCACATACCCTTGGTGGACCGCACCCCTTTAGAGCCTCTCccgatagtggtggtggtggtaggaccCCCCAAGGTGGGCAAGAGCACCCTCATCCGCTGCCTGATCAAAAACTTCACACGGCAGAAACTAGGGGACATCTGCGGGCCTGTGACCATCGTCTCTGGAAAGAAGAGGCGTCTTAACTTCATCGAGTGTAGCAATGACATCAATACAATGATTGACTAGGCAAAGGTTGCTGACGTGGTGCTGATGCTCATTAACGCCAGCTTCGGCTTTGAGATGGAGACCTTTGAGTTCCTCAACATCTGCCAGGTGCACGGCTTCCCGCGCATCATGGGCGTGCTCACCCACCTGGACTCGTTCCGCAATAACAAGGCCCTTCGCAAGACCAAGAAGCGGCTCAAGCATCGCTTCTGGACTGAGGTCTACCAGGGTGCCAAACTCTTCTACCTCTCCGGTATGGTGTACGGGGAGTACCAGACCCAGGAGGTCAAGAACCTGGGCCGCTTCATCTCCGTCATGAAGTTCCGCCCGCTGGTGTGGCAGCAATCTCATCCCTACGTCGTGGCCGACCGCATGGAGGATTTGACGGACCCTGAGATGGTGAGGGTGGACCCCAAGTGTGATCGTACTGTATCTCTCTATGGCTACCTGAGAGGGACATACTTGAAGAATAAAGGCCAGGTCCATATCCCTGGTGTGGGGGACTATGCGGTGGCAGACATCAGCTTCCTGCCAGACCCCTGCGCTCTGCCTGAAGCTCAGAAGAAGAGGGCGCTGAACGAGAAGGAGCGGCTGCTCTACGCTCCCATGGCAGGggtcggggggggggtcgtGTACAATAAGGACGCAGTGTACATCGACCTGCCCGGCGGCCACGTCAATCAAGAACAGGAGGAGGTCCGTCCCACCACAGAGTTGGGCCAATCCCTCATCGGTACACACACCACCCTGGATGCCAAGATGGCCGCCAGCAAAGTCTCACTATTCACAGGGGCGGCTGCCCTGACCCCcggggaagtggaggaggaggagaacggGCTGACGTCAGGACCCCAGGAGAGCCGAGTCTGGGACCctgagacacagcgagagaggaggaaggctgtCTTCACTGAAGAGgaagatgatgacgatgatgacagCGAGGGTAGCAGTGacgaagagggggatgaggaaggagagtctgaagaagaggatgagGGGGAAAACAAAGGGGAAGAAGAAGAACCTGTTATGAAGAAAGAGGCAAAGGACAGAATTGAACCAAAAGAGAAGCAAGGAATAAAGACCATCCCTTCGGTGAAGAGACAGAAGATGGAGGAAAGGAAAGTGGAGAAAGAGCCAGTGGTGGAGGTACCTGCCTTTGCAGACAGTGAGGATGAGCTGGAaatgagtgaggaggaggaaggagaaggggggaagggagagcgggagagtgaaggagaggaaagTGATTCGGAGGGGGAAGACGATGAAGAAGACGGTGCAGTGGAAAAGGGTGATCTCAAACCAATAGACTCGGGTCATTGCTCGGAGGAAGATGCGAGTGATTCAATAGAAGATGACTGTGAAACCAATGTCTCGGGCAAAGAAAGCAAGAAGTCAAATGCCACCTCCAAAAtggaagaggaagatgaggagatggagggaggagagctgTGGTATGAAAGTGCAGGGGCACTGCGGTGGAAGGAGGGTCTGCAACAGAAAGCGTCAGAGGCGTTTCTACGGCAACAGCGCGCCGCCCCCAACCTGCGTAAACTGGTGTACGGCACAGTGGCAGAGGATGATCGTGAtggggaggaggatgaagaggagctGGGAGGGCTGTTTCGAGTCAGCCGCCCCGAGAAGGGCAAGAAGCATCGTGCGGATGGTGTGGACTGCTCCCGTTTTGACCCCGATGCCGCTCGCAATTGGGACCTGGAAGAGATGCTGGACTCGATACGGGGCTGTTTTGTGACGGGGAAATGGGAAGACGATCAAGATGATGCTACATTGCTGAAAGAGGATGAGGAGCTGTATGGCGACTTTGAGGACTTGGAGACAGGGGCAGTGCACAAGGGGAAAGCTGGCAAGCAGAAGGACCAAGCCAAGGAAgaaagtgatgatgatgatgaagaggaggagaagctGATGATGGTGGACAACGAGACCCAGAAGAACAAGCGTCTGGAGAAGAAACGGCGGCTGAAGGAGCGTTTCGACACGGAGTACGACGACGGAGACGCCACCTACTTTGACGACCTCAAGGAGGAGATGCAAAAACAGGCAGAGCTGAACCGGGCTGAGTTTGAGGACGTGGATGACGAGACACGGGTCCAGTACGAGGGCTTCCGGCCTGGCATGTATGTCCGTCTGGAGATCCCCTCCCTGCCCTGCGAGTTTGTCACCAACTTTGACCCCCACTATCCCATCATCTTCGGGGCTCTAGGTGCCAGCGAGGGGAATGTAGGCTACCTGCAGATGCGGTTAAAGAAACATCGGTGGCACAACCGTATCCTGAAAACACGCGACCCTCTCATCCTGTCCCTGGGCTGGCGGCGCTTCCAGACCATCCCCCTGTACCACTTCGAGGACCACAACGGGCGCCACCGCCTGCTCAAGTACACACCACAGCACATGCACTGTGGTGCCACTATCTGGGGTCCCATCACACCTCAGGGCACTGGCTTCCTGGCTGTGCAGTCAGTCGCAGGAACTAAGACCAGTTTCCGCATCGCAGCTACAGGAGTTGTCCTTGACTTGGACAACTCTGTGACCATAGTCAAAAAGCTCAAGCTGATTGGCTACCCATACAAGATCTACAAGAACACATCCTTCATCAAGGGGATGTTCAACACCGTGCTGGAGGTGGCGAAATTCGAAGGGGCTTCCATCCGAACTGTCAGTGGGGTCAGAGGTCAAATTAAGAAGGCCCTGTCAACGCCGGCGGGAGCCTACAGAGCCACGTTCGAAGACAGGCTGCTGATGAGTGACATTGTGTTCCTGCGCTCCTGGTACCCGGTGTCAGTCCCTCAGCTCTACAACCCCGTGACCTCCCTGCTGATGCCAGCGGGCCAGAAGGACAGTTGGTCGGGCATGAGGACGGTGGGCCAGCTGAAACACGACCTGGGGGTCCGCAACAAGCCCAACACAGACTCACTGTACAAGCCGGTGGTGCGAGCGCAGCGCCACTTCAAGAAGCTGCACATCCCCCGGGAGCTGCAGAAGGCATTGCCCTTCAAGAGCAAGCCCAAACAGGACCAGCCCAAGGGTAAAATGCCTAAAGACCTCCAGAGGCCTGCTGTCATACGGGAGCCCCACGAGAGGAAGGTGGCGGCGCTGCTCAACGCGCTGAGCACGGTGCACAACTACAAGAGCAAGAAAGCGCACATGGCGCAGCACACTAAGCACAAGGACTTCCTGCGGCAGCGGAGCAAGGCAGAGGAGGACAAGCTCAAGAGGCAGAAAGAGGCGAAGAAGAAGCTTTACCGTATGATGGGCCAGAAGGAGAAGAAGAGTCAGAGGTCCAGTCTGAAAGGGGCGCCGCAGGATGACTGATTTTAAATCAATATGACTCTTAAAGACCAGTGTAATAACTTTTCGGCCTACCAATGGATTGGAATAACCCTGTTTAAGCATAATCTGTTGGGCTGCAGTGGAGTAGGGAGAAattgcccctagatgctgatctcgggtcagtttagcattttccccgCTAATGGTTAGTGATATTTTGGCAATTAAGCCTATTGTTTACTTCCCTAGTCAGAGAAACTCATTCATGGATACCATTTCTATGTCTCTGCATACAGTATGAAGGAAGGattggggaggggaagctgatcctagatcggtACCTAGGCGAGTCTTCACCCAGAGCGTCTTCAGTACTGGGGTAGGAGTGTAAATGCAAGGAATGGATGAACATCCTTCAGCTTCTGTAGCCTGGTTGTGTAATGTGGTTTTTCAACCCCAGTTATTGACACCTCATTTCAAGTGGTTCCATAGAGGAACCAGAAAGAACTGTATATTAGTCATATCTCTACCACTCGTCTAGCTTCAATCTTGTGTGGTGatttaataaaaataacaaaGATATTACAAAACTGTGAGTACCTTAACTCTAAAAGAGCATAGAAGTAAAGTAAGTGTAATTCTATAATCTATTTTGATCGAGTAGAAGTTTCATAATGGCTAGGTTGTTTCAAATGCACTGATAAGTGGAAGCACATGGCATTTCAGCAACTTTGAAGTTGTGCCTGTCAGAGCGAactcatcatggatataaccCATTTTAGCATGGACATTTTCATTGAGGACTACCACCATTTTAccaagtagtcaactgggtgggattcatccacaaatgaataaaaatgtactactttaaaatggagatggtcacaatggcgctgcccatgcagTCAGACGCTATACGGCCCCACATttgaggtgtcataataccctaGTGGTCTAACAGGGTAATGgtaattgtttttccaccattcatttttcccataaggaattttagaaacacttgTGTAGGCTTAACCTGGTCGGACGTTTTGATATCATGCAAGGtgatttatcaatatattcggctctatttactcattctaaaatgctaattagacatcatgcaagactaaaAATCCCTGCAAGAggctgcacgtcatctctagctgacatctttgctaacaggtattgtgtcaatttaaaacttgcacaagacagctCACAGAAGTGTCAATTGTGAAGACATGTATTCATTACTAAatgtagctaacattagatagttaatccagagattcttacttTTGCCACTGTTCGGCAGTCTCGTTCAGATCATCGTGGCATTTAGTTCTTTATGATGGCCACATTAGTGTTTAAATTCTAATATATTAATAAAAGCCACCTTGTCCTAGACTTGAGAGATTTACATGATTATCAAAATGTCACTCCAGGATAAACCTACATGAAACACGGCCGTTATTATTTTCTAAAACCCCTATGGGGGAAAATGAATGGTCGAAAagcgattggaaccatttccttgtttgaccgctaggttttatgggtatgaAGACTCAACCTGGGGTACTTTAAAGTCAGATACAAAAGAGTCCTCTGTCTCTATGGCCTGTTGTCACacatctgccctctcattggctacaaTCGTCCCACCTGATCTCGCTTCCTCCcacctgccttccatctttgagaACATGTATTATCATTGTTAGTGGTCACTCGAATATAGATTAAAACAGGCTAAGGAGATCTTATATGTTTTTGTTCTGAgatagtcagttaacatgaccatAATGAATGCCTTTTGTGCTTGTTGTGATTACATTGAATGCTTCAAAGTTCAAAAAGTGATGTTAGCTAATGAACATGATCTCATAGAATAAAACGTGTAAAATCGAAGCCTGTGTTTACGGCAGACTTTTTCACTGTttatctaaaaatatatatatatatatatacgctgctcaaaaaaataaagggaacactaaaataaca
>TU151868
AGCCGGTGGTGCGAGCGCAGCGCCACTTCAAGAAGCTGCACATCCCCCGGGAGCTGCAGAAGGCATTGCCCTTCAAGAGCAAGCCCAAACAGGACCAGCCCAAGGGTAAAATGCCTAAAGACCTCCAGAGGCCTGCTGTCATACGGGAGCCCCACGAGAGGAAGGTGGCGGCGCTGCTCAACGCGCTGAGCACGGTGCACAACTACAAGAGCAAGAAAGCGCACATGGCGCAGCACACTAAGCACAAGGACTTCCTGCGGCAGCGGAGCAAGGCAGAGGAGGACAAGCTCAAGAGGCAGAAAGAGGCGAAGAAGAAGCTTTACCGTATGATGGGCCAGAAGGAGAAGAAGAGTCAGAGGTCCAGTCTGAAAGGGGCGCCGCAGGATGACTGATTTTAAATCAATATGACTCTTAAAGACCAGTGTAATAACTTTTCGGCCTACCAATGGATTGGAATAACCCTGTTTAAGCATAATCTGTTGGGCTGCAGTGGAGTAGGGAGAAattgcccctagatgctgatctcgggtcagtttagcattttccccgCTAATGGTTAGTGATATTTTGGCAATTAAGCCTATTGTTTACTTCCCTAGTCAGAGAAACTCATTCATGGATACCATTTCTATGTCTCTGCATACAGTATGAAGGAAGGattggggaggggaagctgatcctagatcggtACCTAGGCGAGTCTTCACCCAGAGCGTCTTCAGTACTGGGGTAGGAGTGTAAATGCAAGGAATGGATGAACATCCTTCAGCTTCTGTAGCCTGGTTGTGTAATGTGGTTTTTCAACCCCAGTTATTGA
>TU151870
aattagacatcatgcaagactaaaAATCCCTGCAAGAggctgcacgtcatctctagctgacatctttgctaacaggtattgtgtcaatttaaaacttgcacaagacagctCACAGAAGTGTCAATTGTGAAGACATGTATTCATTACTAAatgtagctaacattagatagttaatccagagattcttacttTTGCCACTGTTCGGCAGTCTCGTTCAGATCATCGTGGCATTTAGTTCTTTATGATGGCCACATTAGTGTTTAAATTCTAATATATTAATAAAAGCCACCTTGTCCTAGACTTGAGAGATTTACATGATTATCAAAATGTCACTCCAGGATAAACCTACATGAAACACGGCCGTTATTATTTTCTAAAACCCCTATGGGGGAAAATGAATGGTCGAAAagcgattggaaccatttccttgtttgaccgctaggttttatgggtatgaAGACTCAACCTGGGGTACTTTAAAGTCAGATACAAAAGAGTCCTCTGTCTCTATGGCCTGTTGTCACacatctgccctctcattggctacaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945726.1 False 6248 mRNA 0.49 23 31262054 31294577
TU151868 False 817 TUCP 0.35 2 31291470 31293034
TU151870 True 549 lncRNA 0.39 1 31293678 31294226

Neighbor

gene id symbol gene type direction distance location
mxtx2 NA coding upstream 924 31255824 ~ 31261130 (+)
LOC110486889 NA coding upstream 39975 31208985 ~ 31222079 (+)
sri sorcn coding upstream 59662 31199335 ~ 31202392 (+)
LOC110486784 NA coding upstream 115600 31136808 ~ 31146454 (+)
LOC110534689 LOC106605368 coding upstream 370668 30873733 ~ 30891386 (+)
LOC110486933 can7 coding downstream 5425 31300002 ~ 31315913 (+)
eaf1 LOC106581241 coding downstream 65831 31360408 ~ 31366322 (+)
LOC110486995 atg5 coding downstream 294897 31589474 ~ 31624014 (+)
LOC110534719 LOC106605346 coding downstream 547161 31841738 ~ 31857595 (+)
LOC110487037 LOC106605342 coding downstream 619103 31913680 ~ 31933154 (+)
G131815 NA non-coding upstream 9585 31252258 ~ 31252469 (+)
G131813 NA non-coding upstream 12221 31249619 ~ 31249833 (+)
G131794 NA non-coding upstream 33476 31228173 ~ 31228578 (+)
G131782 NA non-coding upstream 53819 31207976 ~ 31208235 (+)
G131835 NA non-coding downstream 1120 31295697 ~ 31295995 (+)
G131847 NA non-coding downstream 40705 31335282 ~ 31388272 (+)
G131886 LOC106584099 non-coding downstream 100512 31395089 ~ 31395472 (+)
G131899 NA non-coding downstream 136741 31431318 ~ 31431552 (+)
G131901 NA non-coding downstream 140159 31434736 ~ 31434966 (+)
G131517 ccne2 other upstream 512100 30748055 ~ 30749954 (+)
G131491 NA other upstream 561431 30700182 ~ 30700623 (+)
G130414 NA other upstream 1472223 29789576 ~ 29789831 (+)
LOC110486279 LOC106605442 other upstream 1568203 29685855 ~ 29697686 (+)
G130308 NA other upstream 1620958 29600026 ~ 29641096 (+)
G132342 LOC100136303 other downstream 563071 31834170 ~ 31887572 (+)
G133473 LOC106605294 other downstream 1872861 33167438 ~ 33169378 (+)
G133663 LOC106605282 other downstream 2201877 33496454 ~ 33497285 (+)
G133760 LOC106605274 other downstream 2519456 33814033 ~ 33814483 (+)
LOC110534710 LOC106605356 other upstream 644 31262054 ~ 31294577 (+)

Expression


Co-expression Network