pkdc (LOC106605355)


Basic Information

Item Value
gene id pkdc
gene name LOC106605355
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31298133 ~ 31299976 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945727.1
GCAACACATGTTCATCGTGAGTTTTACGCACATTTGCGTTGTTAACTAATGTTTTGTCTGTGTCCCTCGTGAGATGGCGACTTCAGGATGAAACAAGAATATCAGGACCTTATTCTGCAGGAGTGTGGTGCAAAGGCTCTGCGTGTTGGTGACACAATCCAGACGCTGTGGAGCGGCTATGGCCAGATTGTGAGGGTCCATTTAGATGGCTGTGACCGCCCCTCTGTCGTTGTCAAACATGTCATGTTCCCAAAGGAAGCCGAGCACCCTGGAGGCTGGAACACAGACCTGTCTCACATGCGCAAGGTGAGGTCCTACCAAGTGGAGACACACTGGTACCAGAACTACTCCACCAATGATGGCTGTCGAATGCCAGCCTGCCTGGCTGCTTGTTCATACGGGGACGAAAAGCTGATCGTTCTGGAGGACCTGGATGTGGTGGGCTTCGACCAGAGAAGAACCAGCGTTAGGGATGCAGAGATGAGGGCCTGCCTCAGCTGGCTGGCCCACTTCCATGGCCTCTTCCTGGGGGTGGTGCCAGAGGGGCTGTGGCCCGTAGGTACCTATTGGCACCTGGAAACACGCCCTGACGAGCTGAATACCATGGATGACGCCCAGCTCAAAGCAGCTGCCGGGGAGATTGACAGGATCCTCAATGAATGCAGCTTCAAGACAATCGTTCACGGAGATGCCAAACTAGCCAACTTCTGCTTCTCTGAGAGTGGGCAGGGTGTGGCGGCAGTGGACTTTCAGTACGTGGGCGGAGGCTGTGGGATGAAGGATGTTGTCTACCTCCTGGAGGAAATAGAGGAGAAACAGCTTGAAAAGAGGGTTCCTGGCCTGCTGGACTACTACTTCACAGAACTGAGGGCATCGGTGACCAAACAGGTGGACTTTGCTGCCCTGGAGAAAGAGTGGAGGGAGATGTTTGCCTTTGCCTGGACAGACTTCCATCGCTTTCTCCTGGGATGGATGCCAGGACACCGGAAGATCAACAGATACACTAAGCAGCTGACTAAAGAGGTGCTGAGGAAACTGAAACGGTGACTTAAGCCTCTGCCATTTAGGCTCAATCACCTGCTGATTGGACTGGATTGTATTGAGGGATGTAGATCAGAAAAACTGATTTGACTGACATTGACTGACAGAAACTGACATTTCTATCATCCATATGCACAAAACCATGTAAACACCCGTTAGTATGCATCACGTGTATGTACTTTAATCGGTTTAATAATACTTTACTGTGGATATGTACAACAACAAGAAATGGCCAGTTCAAATCAGGAgttcaaatataattttattcaacatttgACAGACAAGGGACATTTAGTTCTCTATGTAAGTGTGTATGGCATTGCCTACACAATTTAAGGAATTGCCACGTTTCGTGACTAAGCTGCAATTTGATATCTGCAGATAAACTTAATAAAGCACTTTTAATTCCCACCTTGCAGTGTTTTGGTTCTGCATAGC
>XM_021558825.2
TCCAACGATGACGAGAGCTTTTACCCTCCAATCCAGTTGGTGGCAATATTGAGCCATTGATTGATGTAAATCTCCAGTCCACATTGAAGAGTATTCATGATCGAAACATAACACAGTACAACTCGACGTGCAACACATGTTCATCACTTCAGGATGAAACAAGAATATCAGGACCTTATTCTGCAGGAGTGTGGTGCAAAGGCTCTGCGTGTTGGTGACACAATCCAGACGCTGTGGAGCGGCTATGGCCAGATTGTGAGGGTCCATTTAGATGGCTGTGACCGCCCCTCTGTCGTTGTCAAACATGTCATGTTCCCAAAGGAAGCCGAGCACCCTGGAGGCTGGAACACAGACCTGTCTCACATGCGCAAGGTGAGGTCCTACCAAGTGGAGACACACTGGTACCAGAACTACTCCACCAATGATGGCTGTCGAATGCCAGCCTGCCTGGCTGCTTGTTCATACGGGGACGAAAAGCTGATCGTTCTGGAGGACCTGGATGTGGTGGGCTTCGACCAGAGAAGAACCAGCGTTAGGGATGCAGAGATGAGGGCCTGCCTCAGCTGGCTGGCCCACTTCCATGGCCTCTTCCTGGGGGTGGTGCCAGAGGGGCTGTGGCCCGTAGGTACCTATTGGCACCTGGAAACACGCCCTGACGAGCTGAATACCATGGATGACGCCCAGCTCAAAGCAGCTGCCGGGGAGATTGACAGGATCCTCAATGAATGCAGCTTCAAGACAATCGTTCACGGAGATGCCAAACTAGCCAACTTCTGCTTCTCTGAGAGTGGGCAGGGTGTGGCGGCAGTGGACTTTCAGTACGTGGGCGGAGGCTGTGGGATGAAGGATGTTGTCTACCTCCTGGAGGAAATAGAGGAGAAACAGCTTGAAAAGAGGGTTCCTGGCCTGCTGGACTACTACTTCACAGAACTGAGGGCATCGGTGACCAAACAGGTGGACTTTGCTGCCCTGGAGAAAGAGTGGAGGGAGATGTTTGCCTTTGCCTGGACAGACTTCCATCGCTTTCTCCTGGGATGGATGCCAGGACACCGGAAGATCAACAGATACACTAAGCAGCTGACTAAAGAGGTGCTGAGGAAACTGAAACGGTGACTTAAGCCTCTGCCATTTAGGCTCAATCACCTGCTGATTGGACTGGATTGTATTGAGGGATGTAGATCAGAAAAACTGATTTGACTGACATTGACTGACAGAAACTGACATTTCTATCATCCATATGCACAAAACCATGTAAACACCCGTTAGTATGCATCACGTGTATGTACTTTAATCGGTTTAATAATACTTTACTGTGGATATGTACAACAACAAGAAATGGCCAGTTCAAATCAGGAgttcaaatataattttattcaacatttgACAGACAAGGGACATTTAGTTCTCTATGTAAGTGTGTATGGCATTGCCTACACAATTTAAGGAATTGCCACGTTTCGTGACTAAGCTGCAATTTGATATCTGCAGATAAACTTAATAAAGCACTTTTAATTCCCACCTTGCAGTGTTTTGGTTCTGCATAGC

Function

NR:

description
uncharacterized protein LOC110486949

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945727.1 False 1479 mRNA 0.49 2 31298133 31299847
XM_021558825.2 True 1545 mRNA 0.48 2 31298133 31299976

Neighbor

gene id symbol gene type direction distance location
herpud2 LOC106605359 coding downstream 49260 31231353 ~ 31248873 (-)
LOC110486868 LOC106605361 coding downstream 98892 31196917 ~ 31199241 (-)
LOC110486852 LOC106605360 coding downstream 101958 31192419 ~ 31196292 (-)
LOC110486838 LOC106605362 coding downstream 106661 31180009 ~ 31191472 (-)
LOC110486829 LOC100136479 coding downstream 122603 31172967 ~ 31175530 (-)
LOC110486940 LOC106605354 coding upstream 17629 31317605 ~ 31352632 (-)
LOC110486970 metl6 coding upstream 57858 31357834 ~ 31360219 (-)
LOC110486958 LOC106605352 coding upstream 66353 31366329 ~ 31388549 (-)
LOC118936732 bbs9 coding upstream 174918 31474894 ~ 31567154 (-)
LOC118939115 NA coding upstream 269245 31568460 ~ 31576243 (-)
G132118 NA non-coding downstream 823 31297028 ~ 31297310 (-)
G132117 NA non-coding downstream 2183 31295588 ~ 31295950 (-)
G132095 LOC106581260 non-coding downstream 22181 31272373 ~ 31275952 (-)
G132090 NA non-coding downstream 28753 31269175 ~ 31269380 (-)
G132053 NA non-coding downstream 40014 31255914 ~ 31258119 (-)
G132153 NA non-coding upstream 95018 31394994 ~ 31395214 (-)
G132174 NA non-coding upstream 131222 31431198 ~ 31431553 (-)
G132180 NA non-coding upstream 138385 31438361 ~ 31438655 (-)
G132181 NA non-coding upstream 139208 31439184 ~ 31439452 (-)
G132184 NA non-coding upstream 170405 31470381 ~ 31470622 (-)
trnae-cuc LOC106605367 other downstream 398569 30897026 ~ 30899564 (-)
c2h8orf37 cssa05h8orf37 other downstream 402150 30889693 ~ 30896340 (-)
LOC110486376 LOC106605451 other downstream 1419565 29859575 ~ 29878744 (-)
G132197 NA other upstream 236071 31536047 ~ 31543009 (-)
LOC110486999 prdm1 other upstream 335344 31631886 ~ 31648795 (-)
LOC110514821 NA other upstream 1438853 32738829 ~ 32756992 (-)
G134102 NA other upstream 1448232 32748208 ~ 32788121 (-)
LOC110487618 LOC100380645 other upstream 1912688 33208500 ~ 33225125 (-)

Expression


Co-expression Network