LOC110486933 (can7)


Basic Information

Item Value
gene id LOC110486933
gene name can7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31300002 ~ 31315913 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558804.2
ATTACTTATGTTGTTGTTATCGAGCAGAAAGTAGCTCGTCTACTTGCTAGCTgtatatcataatgttttacGGATATTGTCAAGGCGGTTGTTTCTATTTCATTAATTTGATAATCTTATTTTAAAAACCCAAATTTTGGAACTGTAACTCATTGCTTTGATTTAGCTGTCTGACGTTCTATCAAGTTCGGCTTGCTAGCTAACGCCGCTAGCTAGTTAAAGTTGGTTACGAATGACAGGGACAGTCATATTTTCCAGGCTGTATGAAGGCGTATGAAAAAACGTTAGAACAAAATGGATTGCACGGCACTGGAGCACGATGCAGTTAAATTTGCTAAAACTGCTGTCATCTGCGACCAGAATGGAAAATACAACGAAGCGGTCTTCTATTATAAGGAGGCGGCACAAGCCCTGATCTACGCCGGCATGGCAGGGTCTAAACTGGAGGGCATCCAGGATAAAGTCAATGAGTACCTGGACCGGGTTCAGGCCCTGCACAATGCTGTTCAAGCTCAAAGTAGCGACCCTCTGAAGAGCAAGCAGCAGGTGGATCTGGAGCGGGCCCACTTCCTGGTCACCCAGGCCTTTGAGGAGGATGAGAAGGGCAATGGGGGCGAGGCCATCGAGCTCTACACACAGGCCGTGGAACTCTGCATCCAGACGTCTCATGATACGACAGACCAGGGGCTGCAGGGCAAATTGAAGCAGCTGGCTCGTCAGGCCCTCGATAGGGCGGAGGGGCTGAAGGAGTCCCAGTCCGCCAGTCCCTTAGCCCAGTCGCCACAGGACAGGCCGGGGCCCTCAGGGGCCAAACCCAGTGGGGGGCCTTGTCCCGTCAGACAGTTCTTCCCCCTGGGGCCTGACTTCTCTCTCCAGGACCGCCCCCAGCCAGTCAGGCCGGTCCAGTCCAGCGAGCCTCAGGGTCAGCGCTACACCTCAGAAGAGATCGAGGTGCTCAGGAGCACGTCCAAGATCAACGGCATACCCTTCGTCCCCTTCATGAGTGTGGACCTGAAGGAGAGATTTGCCTTTCCTGTTCCATTCTCGGACAAACTAGGCAAGCTGGCCCTGTCTCCCAAGCAGAAAACCATCTTCTCCCGCTGGGTTCGCCCTGACGAGATCTGCAATAACCCCACCATGATCTTATCTGTATCCAGCTTCAGCATCAAACAGACAGTGGTGTCTGACTGCTCGTTCGTGGCGTCGTTAGCCATCAGCGCTGCCTATGAGCGACGCTACAACAAGAAGCTCATCACCAGCATCATCTACCCCCAGAACCGGCGCGGGGAGCCAGAGTATAACCCCTGTGGGAAGTACATGGTGAAGCTTCACATCAACGGTGTGCCCAGGAAGGTCATTATAGACGACTTCCTGCCATGTGGTCAGAATGGAGAGCTGCTGTGTTCCTACTCCAGCAACAGGAACGAGCTGTGGGTCTCCCTCATAGAGAAGGCCTACATGAAGGTCATGGGAGGTTACGACTTCCCCGGCTCCAACTCGAACATCGATCTGCACGCACTCACTGGCTGGATCCCAGAGCGTATCGCCATGCATTCAGACAATCAGTCATTCATCAAGGACGACACCTTCCGCATGCTCTACCAGAGGTTTCACCGGGGCGACGTCCTAATCACCACAGCAACAGGGGTGATGACAGAGGAGGAAGGCGAAAGGTGGGGCCTTGTGCCAACGCATGCCTATGCTGTCCTGGATATCCGGGAGCACAAAGGGAAGCGATTCCTACAGCTGAAGAACCCGTGGAGCCACCTGAGGTGGAAAGGCCGCTTCAGTGAACGGGATGAGAAAAATTGGACCCCAGAACTTCTCAAATACCTCAACTTTGACCCCAAGACCGCACAGAAGTTTGATAACGGCGTGTTCTGGATCACGTTTGAGGACCTGTGCCAGTACTATGATGTCATCTACCTGAGCTGGAGCCCCGCCCTGTTTAGAGAGTCTTCCTGTATCCACAGTAGCTGGGATGGGAGGCAGGGCCCTGTGAAGGATGCCTACAGCCTGGCCAACAACCCTCAGTACCGGCTGGAGGTGACCTGTCCTGCAGGGGGCACTGCTGTCTGGGTGCTGCTGACCAGACACATCACTGACAAGGATGACTTTGCACAAAACAAGGAGTTCATCACCTTGGTGGTTTACAAGACGGAGGGAAAGAAAGTTTACTACCCTGCGGACCCTCCCCCCTACATAGATGGGATCAGGATCAACAGCCCCCACTACCTGACCAAGATGAGACTAACCagcactggaacacacacattcacactggtGGTGTCACAGTACGAGAAGCAGAACACCATCAACTACACCCTgaggGTCTACTCTGGATGCAAGTTCTCCTTCTCCAAGATCCCAACGCCCTTCACTCATACCAAACGGATCAATGGCCATTGGAAGGGGCCGAGTGCGGGGGGCTGTGGGAACTACAAGGACTCGTACAAGCACAACCCAATCTACCAGTTTAACCTGGAGCGCCCAGGACCCATGCTCATAGAGCTACGAGGCTCCAGGCAGTACAGTGTGGGCTTTGAGATGGTGACCGTGTCCACTGTAGTAGAGCCAGGACCTGCAGGCCACCCGAAGAAGAACAGTGGAGACTACAGGTGTGGTTTCTGCTACATGGAGGCAGACCATGTCCCTGCTGGAATCTACAATGTCATCCCCACCACCTTCCTGCCCAAACAGGAAGGACCCTTCTTCCTGGACTTCAGCAGCGCCACGCCCCTAAAGGTCTCCCAGCTCCAgtaaggagaggggggaggattcAGGGGTGACACCAGGAATAACTTGCTCAGAACATGGACACACTCACTGTTCCCTAGACTCTGGGTGGAACTTGTTATGATTGCAGGACGACCCCAAAGAGACTGATTACTTTATTGATTATTATCAAGGGTATTTGGAAAGGGACATGTTTTTGGTATGGAACATAGCCCTCTATGTGCTGAGGTGTGCAAGAACATGTTCCAAAAAATGTTAACTGACTGAGTAGTAACTATCAGAGCTAATGTTGAAGGTGCTTTCATCCTCCTTTGCCATAATGACAGATACAGTAAATGATGTCA

Function

NR:

description
calpain-7-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function

KEGG:

id description
K08576 CAPN7; calpain-7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558804.2 True 3080 mRNA 0.52 19 31300002 31315913

Neighbor

gene id symbol gene type direction distance location
LOC110534710 LOC106605356 coding upstream 5425 31262054 ~ 31294577 (+)
mxtx2 NA coding upstream 38872 31255824 ~ 31261130 (+)
LOC110486889 NA coding upstream 77923 31208985 ~ 31222079 (+)
sri sorcn coding upstream 97610 31199335 ~ 31202392 (+)
LOC110486784 NA coding upstream 153548 31136808 ~ 31146454 (+)
eaf1 LOC106581241 coding downstream 44495 31360408 ~ 31366322 (+)
LOC110486995 atg5 coding downstream 273561 31589474 ~ 31624014 (+)
LOC110534719 LOC106605346 coding downstream 525825 31841738 ~ 31857595 (+)
LOC110487037 LOC106605342 coding downstream 597767 31913680 ~ 31933154 (+)
LOC110487045 LOC106581064 coding downstream 626053 31941966 ~ 31974601 (+)
G131835 NA non-coding upstream 4007 31295697 ~ 31295995 (+)
G131815 NA non-coding upstream 47533 31252258 ~ 31252469 (+)
G131813 NA non-coding upstream 50169 31249619 ~ 31249833 (+)
G131847 NA non-coding downstream 19369 31335282 ~ 31388272 (+)
G131886 LOC106584099 non-coding downstream 79176 31395089 ~ 31395472 (+)
G131899 NA non-coding downstream 115405 31431318 ~ 31431552 (+)
G131901 NA non-coding downstream 118823 31434736 ~ 31434966 (+)
G131903 NA non-coding downstream 123484 31439397 ~ 31439623 (+)
G131517 ccne2 other upstream 550048 30748055 ~ 30749954 (+)
G131491 NA other upstream 599379 30700182 ~ 30700623 (+)
G130414 NA other upstream 1510171 29789576 ~ 29789831 (+)
LOC110486279 LOC106605442 other upstream 1606151 29685855 ~ 29697686 (+)
G132342 LOC100136303 other downstream 541735 31834170 ~ 31887572 (+)
G133473 LOC106605294 other downstream 1851525 33167438 ~ 33169378 (+)
G133663 LOC106605282 other downstream 2180541 33496454 ~ 33497285 (+)
G133760 LOC106605274 other downstream 2498120 33814033 ~ 33814483 (+)

Expression


Co-expression Network