LOC110486958 (LOC106605352)


Basic Information

Item Value
gene id LOC110486958
gene name LOC106605352
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31366329 ~ 31388549 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558832.2
TGACGCTTGGTCCCCCAGCAGCTCGAGGGGCGCAGAAAACCTACCTTGATACAAAGTGGCCTGAATtagggatttttttgttgtttcatCCTGTTTTGCAGCGTGACAGTGTTGAGAGAGCGCAGCAGAGATTATCAGTAAAGACAGGTGGTACGCATGTTGTGTTCCAGGCTTGTTTGTAGTGAAACGAGATCCAGCCTCGAGATCCGATAGCAGTAGGTGGGTCTCTCCCGGCGCGGTATTATACGGAGTGTTTCATTACCACAGCGGCAGCCAGCCGGGAGCAGCGGGCAAGATTGTACGTCAAATCACTCGGATTATTAAAACCCCCGGCAACTATTTAAATATTGAGGGGCCGTTCTCGTTTTGTTTGGAGGAGGTTCCTGCACACTGCGGGGATGTTTAACTGGAGTAGTAGGGTTTCTATTACGCTGGCATCGCCGTGCGCCTCAGTAGGAGCAGTTTACTGTAACTTTGGGCTGGAGGTGGTTCGCTTCTCGCGGAGCTCCGAGTGAAAGACCAGTGCCGGCTCGTGTAGCCTAACCTAAAACCCGCTACTAATCCTGAGACAGTTGGACAGCATCTCGGCGCAAAACGGACCTAAAATTCCGAACGCAACCGGTTTCTTTTAGCGCTTGACAATATCTGTATATTTTTGGTATTGCCAAACATGAGGATTTTTGAAGACATTTAATTACGAGTATATCTTTAagctaaaaaataaatatatatatatatctttaagctatttgtggaatttatttcccaATAGTTTTATTTGTCATTTTTACTATACGCATCTGTTTTATTTTAATCTCTTATGAAATTTGTTTTTCACTTTTTTGGAAACATTGTCTTATCCTTGCACTTGTTTTGGGAACACAAGAGCGCTCCTGGACGCGACATGAGGACTGTCGCCTGGCTGTCCGCACGGCATTGTCATTGTAATTTTCTTGTGTCATGTCGATTGTCGGATGCCGGAGGACACGCGATGTCGTTTAGCATTTTGACAAACTGAAGGTTATGGGCTGGAACAAAACTAACTGAGGGGGGCAATTATGCTGGAGTCCCATATATTCTAGTGTTTTCAGTCGGACACCAACCCATGggcatataaatatatatatatatatattctagcatatcattttctttttttcgttttccttcttttttttttactggacCAATTTTAGGATGATGTTGTATTGCTGCTCGAGCGCCTTGGTACTTACTAATAAGTTCACCTGCAGCTTTTTATTCGTGTTTTTACTGTTCCAAATGCCACAGTCCTCCTCGCCTTTAATTACAGGTACAGAAGCCATCTGCGAGAACGAAGGAGAGGTGCTCCACATACCCAACATAACGGACAACCCGTGCATCACCTGCGTCTGTCTGGAGGGGAAGGCAGACTGTAAACAGGAGAGGTGTCCCCTGGTGTCTGAGGACTGTGCTCTGGTGGTCAAACAGACGGGAGCCTGCTGTGAGAGATGCAAAGgttGTCAGCTGGATGGAGAGTCCTATAATAGTTCTGTCTCCTGGACCAGCTCCATCAAGCCCTGCATCTCTCGCCGCTGTCAGGAAGGGGTCGTAACTGAAGCGGAAGTGCAATGTGTCGTCCACTGCAGGAACCCCAAGATTCACCCCAAGAAGTGCTGTCCAACGTGCCCGAGCTGTATCTTGGAGGGCCGTCTGTACAAAGAGAGGGAAGAGTTTCACCCTGAGGGAAAACCCTGtattaaatgcacctgcactGGAGGGCGGACCCTATGCGTCAGGGATGTGTGTCCTGTCCTCTCATGCCCCGCCCACCTGAGCCACACTCAGCCCGGACAGTGCTGTCCCAAGTGCCTCGGTCAGAGGAAAGTGTTTGACCTGTCGATGGGGAGTTGTCTGTTCCACAGTGAGGTCTATGAGAACGGCACCTCCTTCAAGCACGACAACTGCACCACCTGTACCTGCAAGAATTCCACTGTGGTGTGCAGGAAGCGCTGCTCTCGGCCGGGCAGTTGCCATGGTGACCAGTGCTGTGGGGAGTGTCTATCCTTCGTGGAGGTAGCGGAAGTGAAGTACTGCCGGGTCAGGAACAAGATCTACCGGGAGGGAGACATGTGGTCGTCTGTGAACTGCACCCTGTGTGCCTGTGTCAAGGGGGCCATCGAGTGCCAGCCAAAGCAGTGTGTGCCAATCACCAGCTGCCCCTCGaaTAAGATCCTGAACAGGACAGGCTGCTGCCCGGTTTGCACTGAAAAGCCAGGTGTGTGCACCGTATTCGGCGACCCTCACTACAACACCTTTGACGGGCGCACGTTTAACTTCCAAGGAACCTGCCAGTATGTTCTGACTCGAGACTGTGGCGGCGCCCTCTCTGGTGGGGGTGGAAACAGCGCCGGCTCTGACTCTGGCTTCACGGTTGTGGTGAGGAACGATGCGAGGCGAACCCGCTCCTACTCCTGGACCCAGTCAGTGGAGCTGAGGATAGGAGGGCTGAGTCTCAGCCTGCACCAGCACCTGACGGTGAGGAGGAACGGCACGCGCATCGCCCTGCCCTACCATGGCCCTGGGGTCCACATCGACCTGGATGGATACCTGCTCAAACTCACCACCATCGCAGGTCTGGAGATCACGTGGGACGGGGACAGCTTCGTGGAGGTGGTGGCTGCTCCTCACCTGCGCGGTCGTCTCTGTGGCCTCTGTGGGAACTACAATGGACACAAGCGGGATGACACCATGGGCAGCGACGGCCTCTTCAAGTTCGTGGTCGATGAGTTTGCAGAGTCGTGGCGCGTGGAAGGGAACGAGGTTTGTGCCCAGCCCCTCAGGAGGCCCACCTCGTACCTCTGTCCCGGGAGTGTAAAGGTCAAGTTCCGCGCTCACAGGGAGTGTCAGAAGCTCAAGTCCTGGGAGTTCCAGAAGTGTCACCGGGTGGTGGACTTTGCCTCCTTCTATAGGTCCTGTGTAACAGACATGTGTGAGTGTCCGGTGCATAAGAACTGTTACTGTGAGTCCTTCATCGCCTACAGCCGGgcctgtgagagggagggagcccCCGTCTACTGGAAGCCAGAGGCTGCCTGCATGGCGACCCAGTGTAAACACGGAGCGGTGTACGACACCTGTGGCCCGGGCTGCACCAAGACCTGTGACAACTGGAATGAGATCGGGCCCTGCCACAAGCCCTGCGTTGCCGGCTGCCACTGCCCAGCCAACCTGGTGCTGTTCCAGGGCCGCTGCATCAAGCCCATAGCCTGCCCTGGCCGGTGACCCTGGTGCCCCAGGGGAAGGGGGCTGAGAGAGGGCCAAACAACCAACACTGCCTAGCACTCAGGGTCCATACCTGGGGGAGTGAGGAGTGGGGGGGGACATGGGGGTGGGTGTGGGGGGATGAATAGATGTGCAGACAGGCAACGATGGACTGAAGGGGTTCTCAGAAGACAGGTAGGTCAGGTAGAGGCCTTGTCCACTCTGAGGGAGATAGATACCGGCCATCACAGACTGGGGTTTGGAACTCCGCTGTCGGTTGATCTTACTCGTCCAGCACTACCTTGTGTTTCCACAGGATGGCGCCCATGTTGTCATTGAAATGGGATAGGAATCTGGAGGGAAACATCACCCTTGTAGTTAAAAGAGGAAGAGACCCTTTGGGAAAGCCTTTGTGGCTATGCTTCTTTAGTTACTGGACCCTCAAGGAACATTCATCCAGACTGCCATGGACCTTCAGGAAAAGGGTGGGGCTGGCTCTGTGTTGAGCCAATATGGCCTCAGTGTTTCACTCTGTTGCAGCACACAGACATTCAAAACCAGGAAACCAACCAATGCATCTTGAACAAGCATGTTCACCCTGCCAGCATAAGGGATAAACTGTACAATGAACATATTGAACCCCCAGGTCTCACTTGCATAGGATTATTTTATACTGTAAACTAACAAGATTTGTATAAAAACAGATAgctttttgtattattattattgttatgttTGTTGTTGATATTGTTAATTTATATATCGATCAATTGATATGTTGTAACAAGAGCCAGAATCACAAATCTAATTTCGTTATAAATGATTTAAAGGGAAAAAAAAGCTATTTATGTATTTGTTGTTTAGTTTGTGTAATTGTGTCTTGTGTGAAGAGAAATGCCCATATGTGACTCGGTTGTTGCACCATCGCAGGGAAGAAACGTACTGTATTTTTAAATGCTCAGTGTACAGGTTGCTGTGTGTTGATTCTCAAACTGAAGGTGTTCCTCGAGACGTACATTTCACTTGACCTTGTAAGTTATTATTTAAGACCAGCAATATATAATTTCCATGAAACT

Function

NR:

description
BMP-binding endothelial regulator protein-like

GO: NA

KEGG:

id description
K24517 BMPER; BMP-binding endothelial regulator protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558832.2 True 4319 mRNA 0.50 15 31366329 31388549

Neighbor

gene id symbol gene type direction distance location
LOC110486970 metl6 coding downstream 6110 31357834 ~ 31360219 (-)
LOC110486940 LOC106605354 coding downstream 13697 31317605 ~ 31352632 (-)
pkdc LOC106605355 coding downstream 66353 31298133 ~ 31299976 (-)
herpud2 LOC106605359 coding downstream 117456 31231353 ~ 31248873 (-)
LOC110486868 LOC106605361 coding downstream 167088 31196917 ~ 31199241 (-)
LOC118936732 bbs9 coding upstream 86345 31474894 ~ 31567154 (-)
LOC118939115 NA coding upstream 180672 31568460 ~ 31576243 (-)
trnap-agg-2 NA coding upstream 188239 31576788 ~ 31576859 (-)
LOC110486984 nt5c3 coding upstream 188896 31577445 ~ 31590842 (-)
dctn3 LOC106605350 coding upstream 203597 31592146 ~ 31595728 (-)
G132118 NA non-coding downstream 69019 31297028 ~ 31297310 (-)
G132117 NA non-coding downstream 70379 31295588 ~ 31295950 (-)
G132095 LOC106581260 non-coding downstream 90377 31272373 ~ 31275952 (-)
G132090 NA non-coding downstream 96949 31269175 ~ 31269380 (-)
G132053 NA non-coding downstream 108210 31255914 ~ 31258119 (-)
G132153 NA non-coding upstream 6445 31394994 ~ 31395214 (-)
G132174 NA non-coding upstream 42649 31431198 ~ 31431553 (-)
G132180 NA non-coding upstream 49812 31438361 ~ 31438655 (-)
G132181 NA non-coding upstream 50635 31439184 ~ 31439452 (-)
G132184 NA non-coding upstream 81832 31470381 ~ 31470622 (-)
LOC110486852 LOC106605360 other downstream 170037 31192419 ~ 31196292 (-)
trnae-cuc LOC106605367 other downstream 466765 30897026 ~ 30899564 (-)
c2h8orf37 cssa05h8orf37 other downstream 470346 30889693 ~ 30896340 (-)
LOC110486376 LOC106605451 other downstream 1487761 29859575 ~ 29878744 (-)
G132197 NA other upstream 147498 31536047 ~ 31543009 (-)
LOC110486999 prdm1 other upstream 246771 31631886 ~ 31648795 (-)
LOC110514821 NA other upstream 1350280 32738829 ~ 32756992 (-)
G134102 NA other upstream 1359659 32748208 ~ 32788121 (-)
LOC110487618 LOC100380645 other upstream 1824115 33208500 ~ 33225125 (-)

Expression


Co-expression Network