LOC118939115


Basic Information

Item Value
gene id LOC118939115
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31568460 ~ 31576243 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036376.1
TGCGCGCAAGTACTAAAGTCCATCGTTAGTGTCACTGCTATGACAACAGGCTTCAAGCAAGTTGATGAGGCACACgtaaaatgtgatttaaaaaaatctgaactGCGAACCACAGACAGGCTCGTCTTGTTAGAGTAGCATGTCTCTGTTCAAGGCGTGTGATTGGTGAGCCGCGGTGCTGGGGGAGGAGTTTGACCAGGGATGCCTGTGTGTCAGAGATGTGGACAACAGCGGACATGATAAGATAGTGGTGGGCAACTACATGGGCATGCTGCGGGtcttctccccccaccctgcCAAGCCTGGAGAGCCAGGCCCACAGCCAGCTACTGGAGGTGCAGCTCAGAGACCCCGTCATCCAGGTTGAAGTGGGCAAGTTTTTCTCGTACTGCTGGTAATGTGGAGCATGGGGTTCAGTACCAGCTCAAGCGGGTCTATGAGCACATCCTCCAGAGGACCGCTTGCAACATGACTTATGGAACCTTCGGAGGGGTCACATGTTACACATCACATGAGCAGCTCAAATACTTCACATGTAACAGATATGCATTGACAGTTTAGTcacaaaccacacacacttttttcatttttttttttagttaaTTCATTGCCCTTTCATTT
>TU152319
TAGTGTCACTGCTATGACAACAGGCTTCAAGCAAGTTGATGAGGCACACgtaaaatgtgatttaaaaaaatctgaactGCGAACCACAGACAGGCTCGTCTTGTTAGAGTAGCATGTCTCTGTTCAAGGCGTGTGATTGGTGAGCCGCGGTGCTGGGGGAGGAGTTTGACCAGGGATGCCTGTGTGTCAGAGATGTGGACAACAGCGGACATGATAGTGGTGGGCAACTACATGGGCATGCTGCGGGtcttctccccccaccctgcCAAGCCTGGAGAGCCAGGCCCACAGCCAGCTACTGGAGGTGCAGCTCAGAGACCCCGTCATCCAGGTTGAAGTGGGCAAGTTTTTCTCGTACTGCTGGTAATGTGGAGCATGGGGTTCAGTACCAGCTCAAGCGGGTCTATGAGCACATCCTCCAGAGGACCGCTTGCAACATGACTTATGGAACCTTCGGAGGGGTCACATGTTACACATCACATGAGCAGCTCAAATACTTCACATGTAACAGATATGCATTGACAGTTTAGTcacaaaccacacacacttttttcatttttttttttagttaaTTCATTGCCCTTTCATTTCTAATGACCACAGAGCTATAAGTGCAGaatatgattcattctgtgtggAGGGGAACCCTTGGCGTTCTGGTGCAGGTTTATTTGGATGGCAGTGACTGGATCGTTGTGTGGATGCATGTGCACACGTGTGGGTGTATTTGTATGTGTAGTAAGTTAGGTTCTGTGTGTCCTTCAAAGGTTGTGTCAGGTCAACCACAGAAGCTCTCTTTTAGCCTGCCAGGAACACACTGCTGAAATCTGGACCAAGCCCCAGACAAGAGACAACAGGCAATTCATTAATGGGAGAGCACACTTATCCAAACACGTGctcactggaacacacacacacacacacacacacacacacacacacacacacacacacacacctcaacaatATATCCCTTGTTTTATTATTGGCCTTCTCATGTCTAAAAGGGCTTCAGTTTAACACTGgtttgtgtgtgcacgtgtgtgtgaggAGACTTGGAGCTGTGTTGGTTACTGTTATAGAGGACATGTTTAGGATGGGAGTCGTTGCTTTTCTTGGATGCTGCAGAGTCGAGGGCTTTCCCCTCCTTTTTTCCAAATACATATATTTCTCTTGAGGGATGATTTCTtgcccccatcctctctccctctctcccccctggcATTCTAACATTCCTCATTAACCCCTGAACTCTTCTTCACCTTATTCATTTCATAGACTTCCAGCGCTTTATGGACTCCTTCATTCATGCCAGTTTCCAtttgcgcaaacacacacacacacacacacc

Function

NR:

description
LOW QUALITY PROTEIN: protein PTHB1-like

GO:

id name namespace
GO:0001843 neural tube closure biological_process
GO:0010842 retina layer formation biological_process
GO:0034464 BBSome cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036376.1 False 621 mRNA 0.49 4 31569221 31576243
TU152319 True 1351 lncRNA 0.49 4 31568460 31576217

Neighbor

gene id symbol gene type direction distance location
LOC118936732 bbs9 coding downstream 2067 31474894 ~ 31567154 (-)
LOC110486958 LOC106605352 coding downstream 180672 31366329 ~ 31388549 (-)
LOC110486970 metl6 coding downstream 209002 31357834 ~ 31360219 (-)
LOC110486940 LOC106605354 coding downstream 216589 31317605 ~ 31352632 (-)
pkdc LOC106605355 coding downstream 269245 31298133 ~ 31299976 (-)
trnap-agg-2 NA coding upstream 545 31576788 ~ 31576859 (-)
LOC110486984 nt5c3 coding upstream 1202 31577445 ~ 31590842 (-)
dctn3 LOC106605350 coding upstream 15903 31592146 ~ 31595728 (-)
LOC110486999 prdm1 coding upstream 55643 31631886 ~ 31648795 (-)
LOC110487017 LOC106605347 coding upstream 188958 31765201 ~ 31777787 (-)
G132212 NA non-coding downstream 76551 31492467 ~ 31492670 (-)
G132189 NA non-coding downstream 91505 31477272 ~ 31477716 (-)
G132188 NA non-coding downstream 92625 31476289 ~ 31476596 (-)
G132184 NA non-coding downstream 98599 31470381 ~ 31470622 (-)
G132246 atg5 non-coding upstream 21154 31597397 ~ 31604712 (-)
G132248 NA non-coding upstream 41794 31618037 ~ 31623113 (-)
G132278 NA non-coding upstream 95984 31672227 ~ 31672676 (-)
G132279 NA non-coding upstream 101223 31677466 ~ 31677739 (-)
G132197 NA other downstream 26212 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 370409 31196917 ~ 31199241 (-)
LOC110486852 LOC106605360 other downstream 372929 31192419 ~ 31196292 (-)
trnae-cuc LOC106605367 other downstream 669657 30897026 ~ 30899564 (-)
c2h8orf37 cssa05h8orf37 other downstream 673238 30889693 ~ 30896340 (-)
LOC110514821 NA other upstream 1162586 32738829 ~ 32756992 (-)
G134102 NA other upstream 1171965 32748208 ~ 32788121 (-)
LOC110487618 LOC100380645 other upstream 1636421 33208500 ~ 33225125 (-)
G134668 NA other upstream 2289245 33865488 ~ 33865937 (-)

Expression


Co-expression Network