LOC110486984 (nt5c3)


Basic Information

Item Value
gene id LOC110486984
gene name nt5c3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31577445 ~ 31590842 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945731.1
TCAGTGCGTCACTGGCCTCTTACAAAGGGGAGGGATTATCTAGTCTAATCTATTTTGGGTGACGCCCCCTCTGTTGCGTTGCCTATATAAGCCCTCTGCTGACAGAGAACCTTTTCTTCACTCCCTTCACTTGTTTTGTGCAAGACCAGAGGAAAAGatGCCAGAGTTTGAGAAGAACACGGTCCACATGAGGGATCCAGAGCGGGTGGAGCAGATCATCTGTGACATGATCAAGGGTGGCGCCTCCAAACTACAGGTCATCACTGACTTTGACATGACGTTAAGCCGGTTCGCAGTCAACGGCAAACGCTGCCCCACGTGTCATAATATCATTGACAACTGCAAGCTTGTCACCGAAGATTGTAGGATGAAGTTACTGGAGCTTAAGAACACATATTACCCCATAGAGATCGACCCCCATCTAACGATGGAGGAGAAGTATCCATTTATGGTAGAATGgtACTTTAAGTCCCACACATTACTGGTGGAGCAGAGGCTACAGAAGGACAAACTCTCGGAGGTGGTGAGAGACTCAGACGCCTGCCTGAGGGAGGGTTATGAGCCGTTCTTTGACCGTCTCCAGCAGCACAACGTGCCCGTGTTCATCTTCTCAGCGGGTCTGGGAGACGTCCTGGAGGAGATCATCCACCAGGCGGGGGTCTACCACCCCAACGTCAAGGTGGTGTCCAACTTCATGGACTTCGATGAGAAtGGCGAGCTGAAGGGCTTCAAGGGAGAGCTGATCCATGTGTTCAACAAGCACGACGGCGCCCTGCGCAACACGGAGTACTTCAAACAGGTGAAGGACAACTGTAACATCGTGCTGCTGGGAGACTCGTTAGGTGACCTCAACATGGCTGACGGCGTGCCCAACGTGGAGAACATCCTCAAGATCGGCTTCCTCAATGACAAGGTGGAGGAGCGTTTGGAGAAATATCTGGACTCTTATGACATCGTCTTGGTAAAGGACGAGACTCTAGAAGTGCCCAATTCCATCCTTCAGAAGATCCTATAACTCATCCCCTCTCCACATCATACTGACACACTTCCCCCAAACCCATGGAAAATGAACCGACCTCTGAACCCCCAGACGGACGTTACTGGCCCCCCGCCACTGACTCACAGCCTCGACATACACTAGCTCCATGGGCACCCCTCCTTGGATCCCACCTCTGCCACCAACCATAGGGTCATGGTTGGGTACTGGATGttcccttcccctctttatgAAGACATTTATTCTCCTCTCAATGAACTATTTTAAAGTACACAGCCTCAGTCTTTGTCTGTCTGCAACCTTGTCGATGTACTCCACCCCATAACTAAAAAGTAATagcaaccccccaaaaaatgctaactaaatattttttataatttgcGTGTAATTGTTCATATTTTTGATATTGTAATGCTTGTATCAGCTTGCAAGTCATAAACCGAGCATCCACACAAGAACACAGCGACGTCTTTGGAACAGTCCTAGCATGCATTTCACCACACTACGTCACCTTGCGTTGTGCAACAGCTTGGCTACAGGAATCAATGTAGGTCTGAAAAAATAACGTGAACCTGTCTACGGGTGAACCATACTCAGACATTGGTGTGAATGTTATCAGTGGTTTTATGGATGCAGTAATGGATTCTGTCTTGCACAAGAAAAGCCATGTCTGCATCTCTATCAGTTTTTTCACATGGGGACTTTGCTACTGTAGCCACACTAGAAAGTAGCACTTTATTTTACTAGAGTACTAACACTGCACATTTGATGTGCCATTTAAATATACTGCATGAGTTATAAGATACCTTATGGTGCTTATATCAATAAattttgttctgcccctgaacaaggcagttaacccactgttcctaggctgtcattgtaaataagaatttgttcttaactgtcttgcctagttaaataaaggtaaaaaaataaaataaaaattgaatCAAGAAATTAAACAAAATTGTGAATGACAGTTGCGATAATAGTAGTAACTAGTGGTGCTAAAGATTTTCATAAGTTAGTTATGGGGTATTACTGTTAATGTAACTGACTTTATGAATGATATAGTGTCAAATAAAGTGCTACCAAAGAAGTCATTA
>XM_036945730.1
TAGTCTTTGTGTAAAATGTGCATAATTGGTCATGGAGGTACATATTTTTCTGCAGACTATCTGAAATGCAGACTAAAATATTGCGAAATACAGGCAGACACCCTATCATATTATTGGGCTATAGTAATGACTAATATAATTAATTGTAATGACTAACGTAATGCATTCTTATTACTTCGTTGCAAACATCTGTTTTGTTGGGGCTCGTTTCCATGGACGTGGTTCATACTAATTCGAAACCAATAATACTGAAACTGAGTGTGTATACATTTCTTAATTATAGCATTTTACTCTATGCGTTACCAACACAATTACATCAAATAGTTGGGTACGTTTGGTTAAATACCCCTGGatgataaaaaaaatgttggtATAAATGCACATCATCCCCCCCGCTTTCACCCCCAGTGGTAGTGGCAGGAGGGTGCGTAGTCAGTTACAGCCTCCGCGGACAATCGACTCGAGGGAGGGAACATGTTGACATAAGGAAGGACTAGGGCTGTTTGTTAGGAGCGGCACAACCATGGACAAGACTGCCGTAGTAAAAGTCGGTGCCGCGGCCAGTGCCAGTGTATGTGCCCTGTTCGGTGGTGTGGTTCTCGCCCAGTACATGTTCGCCAAGAAGAAGAGAGCGGGAAAGAAAACGAAGATCATCGAGATGatGCCAGAGTTTGAGAAGAACACGGTCCACATGAGGGATCCAGAGCGGGTGGAGCAGATCATCTGTGACATGATCAAGGGTGGCGCCTCCAAACTACAGGTCATCACTGACTTTGACATGACGTTAAGCCGGTTCGCAGTCAACGGCAAACGCTGCCCCACGTGTCATAATATCATTGACAACTGCAAGCTTGTCACCGAAGATTGTAGGATGAAGTTACTGGAGCTTAAGAACACATATTACCCCATAGAGATCGACCCCCATCTAACGATGGAGGAGAAGTATCCATTTATGGTAGAATGgtACTTTAAGTCCCACACATTACTGGTGGAGCAGAGGCTACAGAAGGACAAACTCTCGGAGGTGGTGAGAGACTCAGACGCCTGCCTGAGGGAGGGTTATGAGCCGTTCTTTGACCGTCTCCAGCAGCACAACGTGCCCGTGTTCATCTTCTCAGCGGGTCTGGGAGACGTCCTGGAGGAGATCATCCACCAGGCGGGGGTCTACCACCCCAACGTCAAGGTGGTGTCCAACTTCATGGACTTCGATGAGAAtGGCGAGCTGAAGGGCTTCAAGGGAGAGCTGATCCATGTGTTCAACAAGCACGACGGCGCCCTGCGCAACACGGAGTACTTCAAACAGGTGAAGGACAACTGTAACATCGTGCTGCTGGGAGACTCGTTAGGTGACCTCAACATGGCTGACGGCGTGCCCAACGTGGAGAACATCCTCAAGATCGGCTTCCTCAATGACAAGGTGGAGGAGCGTTTGGAGAAATATCTGGACTCTTATGACATCGTCTTGGTAAAGGACGAGACTCTAGAAGTGCCCAATTCCATCCTTCAGAAGATCCTATAACTCATCCCCTCTCCACATCATACTGACACACTTCCCCCAAACCCATGGAAAATGAACCGACCTCTGAACCCCCAGACGGACGTTACTGGCCCCCCGCCACTGACTCACAGCCTCGACATACACTAGCTCCATGGGCACCCCTCCTTGGATCCCACCTCTGCCACCAACCATAGGGTCATGGTTGGGTACTGGATGttcccttcccctctttatgAAGACATTTATTCTCCTCTCAATGAACTATTTTAAAGTACACAGCCTCAGTCTTTGTCTGTCTGCAACCTTGTCGATGTACTCCACCCCATAACTAAAAAGTAATagcaaccccccaaaaaatgctaactaaatattttttataatttgcGTGTAATTGTTCATATTTTTGATATTGTAATGCTTGTATCAGCTTGCAAGTCATAAACCGAGCATCCACACAAGAACACAGCGACGTCTTTGGAACAGTCCTAGCATGCATTTCACCACACTACGTCACCTTGCGTTGTGCAACAGCTTGGCTACAGGAATCAATGTAGGTCTGAAAAAATAACGTGAACCTGTCTACGGGTGAACCATACTCAGACATTGGTGTGAATGTTATCAGTGGTTTTATGGATGCAGTAATGGATTCTGTCTTGCACAAGAAAAGCCATGTCTGCATCTCTATCAGTTTTTTCACATGGGGACTTTGCTACTGTAGCCACACTAGAAAGTAGCACTTTATTTTACTAGAGTACTAACACTGCACATTTGATGTGCCATTTAAATATACTGCATGAGTTATAAGATACCTTATGGTGCTTATATCAATAAattttgttctgcccctgaacaaggcagttaacccactgttcctaggctgtcattgtaaataagaatttgttcttaactgtcttgcctagttaaataaaggtaaaaaaataaaataaaaattgaatCAAGAAATTAAACAAAATTGTGAATGACAGTTGCGATAATAGTAGTAACTAGTGGTGCTAAAGATTTTCATAAGTTAGTTATGGGGTATTACTGTTAATGTAACTGACTTTATGAATGATATAGTGTCAAATAAAGTGCTACCAAAGAAGTCATTA

Function

symbol description
nt5c3 Enables 5'-nucleotidase activity. Involved in CMP catabolic process. Located in mitochondrion. Is expressed in several structures, including alimentary system; hemolymphoid system; liver; nervous system; and respiratory system. Orthologous to human NT5C3A (5'-nucleotidase, cytosolic IIIA).

NR:

description
cytosolic 5'-nucleotidase 3 isoform X1

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008253 5'-nucleotidase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K24242 NT5C3; cytosolic 5'-nucleotidase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945731.1 False 2106 mRNA 0.45 9 31577445 31582044
XM_036945730.1 True 2610 mRNA 0.44 9 31577445 31590842

Neighbor

gene id symbol gene type direction distance location
trnap-agg-2 NA coding downstream 586 31576788 ~ 31576859 (-)
LOC118939115 NA coding downstream 1202 31568460 ~ 31576243 (-)
LOC118936732 bbs9 coding downstream 10291 31474894 ~ 31567154 (-)
LOC110486958 LOC106605352 coding downstream 188896 31366329 ~ 31388549 (-)
LOC110486970 metl6 coding downstream 217226 31357834 ~ 31360219 (-)
dctn3 LOC106605350 coding upstream 1304 31592146 ~ 31595728 (-)
LOC110486999 prdm1 coding upstream 41044 31631886 ~ 31648795 (-)
LOC110487017 LOC106605347 coding upstream 174359 31765201 ~ 31777787 (-)
LOC100136303 LOC100136303 coding upstream 266852 31857694 ~ 31883061 (-)
LOC118939268 NA coding upstream 276255 31867097 ~ 31871227 (-)
G132212 NA non-coding downstream 84775 31492467 ~ 31492670 (-)
G132189 NA non-coding downstream 99729 31477272 ~ 31477716 (-)
G132188 NA non-coding downstream 100849 31476289 ~ 31476596 (-)
G132246 atg5 non-coding upstream 6555 31597397 ~ 31604712 (-)
G132248 NA non-coding upstream 27195 31618037 ~ 31623113 (-)
G132278 NA non-coding upstream 81385 31672227 ~ 31672676 (-)
G132279 NA non-coding upstream 86624 31677466 ~ 31677739 (-)
G132197 NA other downstream 34436 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 378633 31196917 ~ 31199241 (-)
LOC110486852 LOC106605360 other downstream 381153 31192419 ~ 31196292 (-)
trnae-cuc LOC106605367 other downstream 677881 30897026 ~ 30899564 (-)
c2h8orf37 cssa05h8orf37 other downstream 681462 30889693 ~ 30896340 (-)
LOC110514821 NA other upstream 1147987 32738829 ~ 32756992 (-)
G134102 NA other upstream 1157366 32748208 ~ 32788121 (-)
LOC110487618 LOC100380645 other upstream 1621822 33208500 ~ 33225125 (-)
G134668 NA other upstream 2274646 33865488 ~ 33865937 (-)

Expression


Co-expression Network