LOC110487017 (LOC106605347)


Basic Information

Item Value
gene id LOC110487017
gene name LOC106605347
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31765201 ~ 31777787 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558922.2
TAAAATTAAGAGCAGTGCAAAGATTCAACAGTCCCAATGAAGACTTTGCCACTGGAGTGGAGACGCACAACGATTAGTCGGTTTTTAACAATGTGCTCAACGAGTCAAAAACGGAGAGTGTTTTAATTTTGTTTTGTAATAGACGAAGAGCATACTTGTTCAAAAATCAGTCGAAGTAGCTTCCATTTTTTCAGCGTTTTTGTGTGCAGCCTGACAATAAATCTACAGAGCTCACTCCGCGAGCGGATTTGGACGTTTTACTTCTACTACTCTCGCCATGGAGTACACATCTTCCCCGAAGCCACAGCTCTCCTCCAGGGCAAACGCGTTCTCGATAGCCGCTATCATGTCAAGTGGAAAAACGAAGGACAAGGAAACCGATGAAAACACCATCAAGCCACTTGAACAATTCGTGGAGAAGTCCTCCTGTAACCAAGGTTTGGGAGAGCTGTCTTCTCTAGATGGGCTCGGAGATTTCAGCGGGAGCGCGCCTCCAGTGTGCACAGAGCCGCTGATCCCCACCACTCCCAGTGTTCCCAGCGAGGAGATGGCCAAAATCTCCTGCAGTTTAGAGACCAAAGAACTCTGGGACAAGTTCCATGATCTCGGCACCGAGATGATCATCACAAAATCCGGAAGAAGAATGTTCCCCACCATCCGTGTGTCCTTCTCCGGGGTGGACCCGGACGCCAAATACATCGTGCTGATGGACATTGTTCCGGTCGACAACAAACGCTACCGATACGCCTACCACAGGTCGTCCTGGCTCGTGGCGGGCAAGGCGGACCCTCCTCTGCCTGCAAGGTTATACGTGCACCCTGACTCTCCTTTCACTGGGGAACAGCTGCTCAAACAAATGGTGTCTTTCGAGAAAGTAAAGCTCACCAACAACGAACTGGACCAACATGGACACATCATACTAAACTCCATGCATAAGTACCAGCCCCGGGTCCACATCATCAAGAAGAAGGACCACACCGCCTCCCTTCTCAACCTCAAGTCAGAGGAGTTCCGCACCTTCGTTTTCACCGAGACTGTCTTTACCGCGGTCACAGCCTACCAGAACCAGCTGATAACCAAGCTGAAGATCGACAGCAACCCGTTTGCGAAAGGCTTCCGAGACTCCTCCCGACTGACGGACATGGAGAGCAGGGAAAGTGTTGAGAGTTTGATCCACAAGCACTCATACGCACGGTCGCCAATACGCACCTACGCAGGTGAGGAGGAGACACTGGGGGATGACAGCCACGCCGCACATAGGGGTTCTGCGTTCACCGCCTCTGACAACCTCTCCCTGAGCTCCTGGGTCACCGCCACCTCTGGTTTCTCAGGCTTCCAGCACCCCCAGTCCCTCTCTGCCATGGGCTCCAGCAGCTCCTCCCTGGCCACCCCCTTACCCCACCCCATCCAGGGCTCCCTGCCCCCTTACAGCCGGCTGGGCATGCCCCTGACACACTCGACCCTGGCGGGCACCATGCAGGGCGGTGggccctccttcccctccttccaTATGCCCCGCTACCACCACTACTTCCAGCAGGGCCCCTACGCTGCCATCCAGGGACTGCGCCACTCCTCCACCGTCATGACCCCCTTTGTATGACTCCCTCTGGGGTGACTGCCTGGCCGAGTAGCCCCTCATCAGCTACAACTAAGCTTATAGACACACTTCCACACACAAGTAGATAGACTCACCGATTTGTCCGCCTCAGCATCATCACCCATCGTCACCACCGTGTCCTTGTAAATAATAAGCCGTCTGGCCGAGGCGACTGACTGGACGACCTGGAGAGGCTGCCTGGCTGCTGTCCTGCATGCTGACAGCTGAACCGGAGAGGAAACAGACTCCTACGGGACCTGGTGGAACAGACACAGAGACCCACAGACTGATATGAACACCAGATATGAACACTTATGACCTGCATATGAATATTTACGACCCAGATATGAAAACTGATGATCCAGGTATAAAAGAAAAATCCACAACAAAGATGCTGAGGACTGATGACCATGCACAGTGATGTGTTGTGGGAAATAGGTAATGGTCTGCTTGTGATGACTGTCGTTTGCCCCTGCCCTCCAACGGTTGGTTACAATGTTCATTTTGCACCCACTCTCCAGAAAAGCATGGACAGGAGAACCAGTGAACTGTCTGGTTTACGAACATTAAAACCAGAGGGTGTGGTAATTGTTAGTTATCTAACAGCTTCTGAGGACAATGAAGAATATGGGACTCCAAAAGTTTACGGGAGTGCACAACTTCCAATCCTGGGCACCGCTTGTGGCCACGGAGGATAACTATCTTCACTCCAGCTGCTGGGTCATGGAGGAATGGCAGCCATTTTAGACTGAGTCAAAGGATTCCCCCTGCTTGCTAACCAAAACTcacagggagggtagaggcaacatctctcctctcctgcttgTACTCAAACTCTGTTAAGCTTCCTCTGCAGGCAGAATCCTATAGCCTCCTCCAGTCAGGTTGGCTGTTGCCATGGTAGTCAGATTTGTGCGCATAGATGCCCTAGAGACAGAGCGAAACCAATTGTTTATTTCCCATCTAAAAAGCCAGCCATGTGTACTGTGAAGAAGTTACAATGGAAGATGATCACGTTTGATAGCAGTAcagaaagatacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca
>XM_021558927.2
TAAAATTAAGAGCAGTGCAAAGATTCAACAGTCCCAATGAAGACTTTGCCACTGGAGTGGAGACGCACAACGATTAGTCGGTTTTTAACAATGTGCTCAACGAGTCAAAAACGGAGAGTGTTTTAATTTTGTTTTGTAATAGACGAAGAGCATACTTGTTCAAAAATCAGTCGAAGTAGCTTCCATTTTTTCAGCGTTTTTGTGTGCAGCCTGACAATAAATCTACAGAGCTCACTCCGCGAGCGGATTTGGACGTTTTACTTCTACTACTCTCGCCATGGAGTACACATCTTCCCCGAAGCCACAGCTCTCCTCCAGGGCAAACGCGTTCTCGATAGCCGCTATCATGTCAAGTGGAAAAACGAAGGACAAGGAAACCGATGAAAACACCATCAAGCCACTTGAACAATTCGTGGAGAAGTCCTCCTGTAACCAAGGTTTGGGAGAGCTGTCTTCTCTAGATGGGCTCGGAGATTTCAGCGGGAGCGCGCCTCCAGTGTGCACAGAGCCGCTGATCCCCACCACTCCCAGTGTTCCCAGCGAGGAGATGGCCAAAATCTCCTGCAGTTTAGAGACCAAAGAACTCTGGGACAAGTTCCATGATCTCGGCACCGAGATGATCATCACAAAATCCGGAAGAAGAATGTTCCCCACCATCCGTGTGTCCTTCTCCGGGGTGGACCCGGACGCCAAATACATCGTGCTGATGGACATTGTTCCGGTCGACAACAAACGCTACCGATACGCCTACCACAGGTCGTCCTGGCTCGTGGCGGGCAAGGCGGACCCTCCTCTGCCTGCAAGGTTATACGTGCACCCTGACTCTCCTTTCACTGGGGAACAGCTGCTCAAACAAATGGTGTCTTTCGAGAAAGTAAAGCTCACCAACAACGAACTGGACCAACATGGACACATCATACTAAACTCCATGCATAAGTACCAGCCCCGGGTCCACATCATCAAGAAGAAGGACCACACCGCCTCCCTTCTCAACCTCAAGTCAGAGGAGTTCCGCACCTTCGTTTTCACCGAGACTGTCTTTACCGCGGTCACAGCCTACCAGAACCAGCTGATAACCAAGCTGAAGATCGACAGCAACCCGTTTGCGAAAGGCTTCCGAGACTCCTCCCGACTGACGGACATGGAGAGGGAAAGTGTTGAGAGTTTGATCCACAAGCACTCATACGCACGGTCGCCAATACGCACCTACGCAGGTGAGGAGGAGACACTGGGGGATGACAGCCACGCCGCACATAGGGGTTCTGCGTTCACCGCCTCTGACAACCTCTCCCTGAGCTCCTGGGTCACCGCCACCTCTGGTTTCTCAGGCTTCCAGCACCCCCAGTCCCTCTCTGCCATGGGCTCCAGCAGCTCCTCCCTGGCCACCCCCTTACCCCACCCCATCCAGGGCTCCCTGCCCCCTTACAGCCGGCTGGGCATGCCCCTGACACACTCGACCCTGGCGGGCACCATGCAGGGCGGTGggccctccttcccctccttccaTATGCCCCGCTACCACCACTACTTCCAGCAGGGCCCCTACGCTGCCATCCAGGGACTGCGCCACTCCTCCACCGTCATGACCCCCTTTGTATGACTCCCTCTGGGGTGACTGCCTGGCCGAGTAGCCCCTCATCAGCTACAACTAAGCTTATAGACACACTTCCACACACAAGTAGATAGACTCACCGATTTGTCCGCCTCAGCATCATCACCCATCGTCACCACCGTGTCCTTGTAAATAATAAGCCGTCTGGCCGAGGCGACTGACTGGACGACCTGGAGAGGCTGCCTGGCTGCTGTCCTGCATGCTGACAGCTGAACCGGAGAGGAAACAGACTCCTACGGGACCTGGTGGAACAGACACAGAGACCCACAGACTGATATGAACACCAGATATGAACACTTATGACCTGCATATGAATATTTACGACCCAGATATGAAAACTGATGATCCAGGTATAAAAGAAAAATCCACAACAAAGATGCTGAGGACTGATGACCATGCACAGTGATGTGTTGTGGGAAATAGGTAATGGTCTGCTTGTGATGACTGTCGTTTGCCCCTGCCCTCCAACGGTTGGTTACAATGTTCATTTTGCACCCACTCTCCAGAAAAGCATGGACAGGAGAACCAGTGAACTGTCTGGTTTACGAACATTAAAACCAGAGGGTGTGGTAATTGTTAGTTATCTAACAGCTTCTGAGGACAATGAAGAATATGGGACTCCAAAAGTTTACGGGAGTGCACAACTTCCAATCCTGGGCACCGCTTGTGGCCACGGAGGATAACTATCTTCACTCCAGCTGCTGGGTCATGGAGGAATGGCAGCCATTTTAGACTGAGTCAAAGGATTCCCCCTGCTTGCTAACCAAAACTcacagggagggtagaggcaacatctctcctctcctgcttgTACTCAAACTCTGTTAAGCTTCCTCTGCAGGCAGAATCCTATAGCCTCCTCCAGTCAGGTTGGCTGTTGCCATGGTAGTCAGATTTGTGCGCATAGATGCCCTAGAGACAGAGCGAAACCAATTGTTTATTTCCCATCTAAAAAGCCAGCCATGTGTACTGTGAAGAAGTTACAATGGAAGATGATCACGTTTGATAGCAGTAcagaaagatacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca
>XM_021558916.2
CTAAAATTAAGAGCAGTGCAAAGATTCAACAGTCCCAATGAAGACTTTGCCACTGGAGTGGAGACGCACAACGATTAGTCGGTTTTTAACAATGTGCTCAACGAGTCAAAAACGGAGAGTGTTTTAATTTTGTTTTGTAATAGACGAAGAGCATACTTGTTCAAAAATCAGTCGAAGTAGCTTCCATTTTTTCAGCGTTTTTGTGTGCAGCCTGACAATAAATCTACAGAGCTCACTCCGCGAGCGGATTTGGACGTTTTACTTCTACTACTCTCGCCATGGAGTACACATCTTCCCCGAAGCCACAGCTCTCCTCCAGGGCAAACGCGTTCTCGATAGCCGCTATCATGTCAAGTGGAAAAACGAAGGACAAGGAAACCGATGAAAACACCATCAAGCCACTTGAACAATTCGTGGAGAAGTCCTCCTGTAACCAAGGTTTGGGAGAGCTGTCTTCTCTAGATGGGCTCGGAGATTTCAGCGGGAGCGCGCCTCCAGTGTGCACAGAGCCGCTGATCCCCACCACTCCCAGTGTTCCCAGCGAGGAGATGGCCAAAATCTCCTGCAGTTTAGAGACCAAAGAACTCTGGGACAAGTTCCATGATCTCGGCACCGAGATGATCATCACAAAATCCGGAAGAAGAATGTTCCCCACCATCCGTGTGTCCTTCTCCGGGGTGGACCCGGACGCCAAATACATCGTGCTGATGGACATTGTTCCGGTCGACAACAAACGCTACCGATACGCCTACCACAGGTCGTCCTGGCTCGTGGCGGGCAAGGCGGACCCTCCTCTGCCTGCAAGGTTATACGTGCACCCTGACTCTCCTTTCACTGGGGAACAGCTGCTCAAACAAATGGTGTCTTTCGAGAAAGTAAAGCTCACCAACAACGAACTGGACCAACATGGACACATCATACTAAACTCCATGCATAAGTACCAGCCCCGGGTCCACATCATCAAGAAGAAGGACCACACCGCCTCCCTTCTCAACCTCAAGTCAGAGGAGTTCCGCACCTTCGTTTTCACCGAGACTGTCTTTACCGCGGTCACAGCCTACCAGAACCAGCTGATAACCAAGCTGAAGATCGACAGCAACCCGTTTGCGAAAGGCTTCCGAGACTCCTCCCGACTGACGGACATGGAGAGGTTACTGCAAAGACATGATATATCTTGGGAAAGTGTTGAGAGTTTGATCCACAAGCACTCATACGCACGGTCGCCAATACGCACCTACGCAGGTGAGGAGGAGACACTGGGGGATGACAGCCACGCCGCACATAGGGGTTCTGCGTTCACCGCCTCTGACAACCTCTCCCTGAGCTCCTGGGTCACCGCCACCTCTGGTTTCTCAGGCTTCCAGCACCCCCAGTCCCTCTCTGCCATGGGCTCCAGCAGCTCCTCCCTGGCCACCCCCTTACCCCACCCCATCCAGGGCTCCCTGCCCCCTTACAGCCGGCTGGGCATGCCCCTGACACACTCGACCCTGGCGGGCACCATGCAGGGCGGTGggccctccttcccctccttccaTATGCCCCGCTACCACCACTACTTCCAGCAGGGCCCCTACGCTGCCATCCAGGGACTGCGCCACTCCTCCACCGTCATGACCCCCTTTGTATGACTCCCTCTGGGGTGACTGCCTGGCCGAGTAGCCCCTCATCAGCTACAACTAAGCTTATAGACACACTTCCACACACAAGTAGATAGACTCACCGATTTGTCCGCCTCAGCATCATCACCCATCGTCACCACCGTGTCCTTGTAAATAATAAGCCGTCTGGCCGAGGCGACTGACTGGACGACCTGGAGAGGCTGCCTGGCTGCTGTCCTGCATGCTGACAGCTGAACCGGAGAGGAAACAGACTCCTACGGGACCTGGTGGAACAGACACAGAGACCCACAGACTGATATGAACACCAGATATGAACACTTATGACCTGCATATGAATATTTACGACCCAGATATGAAAACTGATGATCCAGGTATAAAAGAAAAATCCACAACAAAGATGCTGAGGACTGATGACCATGCACAGTGATGTGTTGTGGGAAATAGGTAATGGTCTGCTTGTGATGACTGTCGTTTGCCCCTGCCCTCCAACGGTTGGTTACAATGTTCATTTTGCACCCACTCTCCAGAAAAGCATGGACAGGAGAACCAGTGAACTGTCTGGTTTACGAACATTAAAACCAGAGGGTGTGGTAATTGTTAGTTATCTAACAGCTTCTGAGGACAATGAAGAATATGGGACTCCAAAAGTTTACGGGAGTGCACAACTTCCAATCCTGGGCACCGCTTGTGGCCACGGAGGATAACTATCTTCACTCCAGCTGCTGGGTCATGGAGGAATGGCAGCCATTTTAGACTGAGTCAAAGGATTCCCCCTGCTTGCTAACCAAAACTcacagggagggtagaggcaacatctctcctctcctgcttgTACTCAAACTCTGTTAAGCTTCCTCTGCAGGCAGAATCCTATAGCCTCCTCCAGTCAGGTTGGCTGTTGCCATGGTAGTCAGATTTGTGCGCATAGATGCCCTAGAGACAGAGCGAAACCAATTGTTTATTTCCCATCTAAAAAGCCAGCCATGTGTACTGTGAAGAAGTTACAATGGAAGATGATCACGTTTGATAGCAGTAcagaaagatacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

NR:

description
T-box transcription factor TBX20 isoform X1

GO: NA

KEGG:

id description
K10185 TBX20; T-box protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558922.2 False 2697 mRNA 0.52 8 31765201 31777786
XM_021558927.2 False 2694 mRNA 0.52 8 31765201 31777786
XM_021558916.2 True 2722 mRNA 0.52 9 31765201 31777787

Neighbor

gene id symbol gene type direction distance location
LOC110486999 prdm1 coding downstream 116523 31631886 ~ 31648795 (-)
dctn3 LOC106605350 coding downstream 169473 31592146 ~ 31595728 (-)
LOC110486984 nt5c3 coding downstream 174359 31577445 ~ 31590842 (-)
trnap-agg-2 NA coding downstream 188342 31576788 ~ 31576859 (-)
LOC118939115 NA coding downstream 188958 31568460 ~ 31576243 (-)
LOC100136303 LOC100136303 coding upstream 79907 31857694 ~ 31883061 (-)
LOC118939268 NA coding upstream 89310 31867097 ~ 31871227 (-)
LOC110534727 LOC106581127 coding upstream 111243 31889030 ~ 31892905 (-)
LOC110534740 NA coding upstream 119679 31897466 ~ 31906130 (-)
LOC110487053 LOC106605337 coding upstream 249439 32027226 ~ 32056238 (-)
G132305 NA non-coding downstream 52116 31712874 ~ 31713085 (-)
G132286 NA non-coding downstream 68251 31696749 ~ 31696950 (-)
G132279 NA non-coding downstream 87462 31677466 ~ 31677739 (-)
G132278 NA non-coding downstream 92525 31672227 ~ 31672676 (-)
G132581 LOC106605342 non-coding upstream 135923 31913710 ~ 31915220 (-)
G132594 NA non-coding upstream 162929 31940716 ~ 31941065 (-)
G132612 NA non-coding upstream 200805 31978592 ~ 31979092 (-)
G132613 NA non-coding upstream 202663 31980450 ~ 31980955 (-)
G132614 NA non-coding upstream 204083 31981870 ~ 31982088 (-)
G132197 NA other downstream 222192 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 566389 31196917 ~ 31199241 (-)
LOC110486852 LOC106605360 other downstream 568909 31192419 ~ 31196292 (-)
trnae-cuc LOC106605367 other downstream 865637 30897026 ~ 30899564 (-)
LOC110514821 NA other upstream 961042 32738829 ~ 32756992 (-)
G134102 NA other upstream 970421 32748208 ~ 32788121 (-)
LOC110487618 LOC100380645 other upstream 1434877 33208500 ~ 33225125 (-)
G134668 NA other upstream 2087701 33865488 ~ 33865937 (-)
G135575 NA other upstream 2826428 34604215 ~ 34604478 (-)

Expression


Co-expression Network