LOC118939268


Basic Information

Item Value
gene id LOC118939268
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31867097 ~ 31871227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945738.1
acaacggtagccatcttgaagaatgtggggacaatagactgggataaggattgattgaatatgtccgtaaacacaccagccagccggTCTGTGCATGCGCTGAGGACGTGGTTCGGGATGCTGTCTGGGcgaacacgtttaaatgttttactcacgtcagccacggagaaggagagggggcgcagtccttgttagcgggccgCGACGGTgacactgtgttatcctcaaagcgggcaaagaaggtgttttgTTTGTATGGAAGCGTGACCTCGgtatccgtgacgtggctggttttctttttgtagtccgtgatttcctcTCAGATCACACAGAATGTCACCATGCcagtgattgaagtggatttaccaagtgacatcaataagggatcatagctttcacctggattcacatggtcagtctatgtcatgttttgtacaatcagtatatatacagtagttaCAAAGGTGACCAATGAAGTGTTCACACAGGTGAGAGACATGCTTAAGCATTTGACAGGGGCAGGGCCAACCTGTATTGGATGAACAAGAAGGGGGACAGACGCTGCGCCATCACTGGCATGGTGATGATCTGTGTGATCTGAGAGGAACACTTCACGGCAGACCACCCCTTCCTCTTCTTCATCAGACAATAAGACTAACTACATCCTCCTCCTCGGCAGGTTTTCCTCTCCTCATTGGAATAGGGATGGTATTGTAGTAACAACTGAATACACCAAGCCAAATGAAAAATTATATTTAGTTTGGACAGTATCATTGTGAATGATGATGGTTCCCCCTTACACTCTGTTAAGATTTGAATTGAATAATGCAATTGACACAACCTTCCTTATCTGTTGAAGGATCCAAACAATGGTCAAAACATCTACAATCCTATTAGAAAATGTTGTGGTgtgattatttattttacaatattTCCATGTTGGTAGAAATGAATCATAATCATCATAATATCATTTGTTTTAAAGCAAGCACATTTAGAATATAAATCATCATAAATAAGAAATGATTAAATCAAGAAACACTCAAATGTAACCGGCATCAActggaaaacaatacaaaaatCAGGACTTATATAGTATGTATTTTGAAATACATACAAATCATTGTGCATCTCCTTATGTTGTAATCAATGCGTTATGTTGTCAGAGGCCCAGCAGCAGAGGGACTAGGCTCAGTCTGATGGACCAGGCTATAGCTGTTACAGGCACATTGGTTAAAGTTACAGAGGCTGTAGTTACAGGGGATGTAGTTGCAGTTACAGATACCGGCCCTGTGTTTACAGATACGGGCCCTGTGGTTACAGATACGGGCCCTGTGGTTACAGATACGGGCCCTGTGGTTACAGATACGGGCCCTGTGGTTACAGATACGGGCCCTGTGGTTACAGATACGGGCCCTGTGGTTACAGATACAGGGGCTTTGGTTACAGTTTCAGGGGACGTTGTTATAGGTAAAGGGGCTATAATTACAGTTCAAGGCGCTGTGATTAGTTACAGATGCTACAGAGGCTGTAGATAAAGGTAAAGAGACTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTAGATAAAGGCACAGAGGCTGTATGTGTTGTAGTTACAGTTACAAGGGCTGTTACAGTTACAGGGATTGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGAGGATGTAGTTACAGGTACAGGGGATGTAGTTACTGGTACAGgggatgtactgtagttactggtACAGGGGATATAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATATAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGAATGTAGTTACAGGTACAGGGGATGTAGTTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGCAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGTAGTTACTGGTACAGGGGATGCAGTTACTGGTACAGGGGATGCAGTTACTGGTACAGGGGATGCAGTTACTGGTACAGGGGATGCAGTTATAGGTACAGGGGATGTAGTTACAGGCACAGGGGATTCAGTTATAGGTACCGGGGATTCAGTTACAGGTACAGGGGATTCAGTTACAGGTACAGGGGATTCAGTTACAGGTACAGGGGATTCAGTTACAGGTACCGGGGATTCAGTTACAGGTACCGGGGATTCAGTTACAGGTACCGGGGATTCAGTTACAGGTACAGGGGATTCAGTTACAGGTACAGGGGATTCAGTTAAGGGTACCGGGGATTCAGTTACAGGTACAGGGGATTCAGTTACAGGTACCGGGGATTCAGTTACAGGTACCGGGGATTCAGTTACAGGTACCGGGGATTCAGTTACAGGTACTGGGGATTCAGTTACAGGTACCGGGGATTCAGTTACAGGTACAGGGGATTCAGTTACATTGTAGTTCATTCGCCAGCGAACTGGGGAGGAGATCTGTAGGAGGAGAACAGATCTACTGTACAGTAGCTATAAATAACTATTGTTCTGATCTTGTTGTTGGTaatgcaatggaaacacattcAGGAACCATGTTGTCTGGTTCTCCTTAGTTCTCGTTTGTCCTGGTTCTGATAGTGGAATGGAGGCAATGagatattacagtacagtagctcTGACTTttctgatagctactttattgaggacaaatatacttactgtatgaattataatctacataataattACCATATATTATTGCTGTAGGATGATTTTCCcactgtagcaaactgtctcaaattaagatcctataaaTGTAAGACACAGTCCGATCATATACTGTATTTCTACAAACAATGACAGCTGAAATGAACACATTAAATACATTGTTGGAAACACAAACATTACTTAGGTAATAGACACAGGTATCTTACCATTCAGAGTTTGATTGTTGCAGCCACTGAtgcagcagagctggttagaggCAGTGCAAATGAAGCCCTTGTCTTTTGACACTGGTTTCAGTGCACAGAGGAGTTCTGCAGTtggaggtagtgatggatgctgCATTGAGAGTACCTGTAGTGGACAAAACAGGTTAAACATTATCAGACGACACATACACAGGCCTGAAATATCTTCTACATATTAATTTTACTCAAAGCAAGACTGTTGTCAATGACTGATTAACAAGGCAACAATAGTAAAAACATGATAAGCATATGtaatacatatttatattagacagCATTTGGTCCACTGGACTGAGCAGAAGGATGTCTGTGTTCTCCTCAATGTCCAGCTCAGTTGAGCAGTTCTTCAGTGGGATGGTGGGGGCGGTGAACATGCCAAGCAGAGCACTAATCTTGGTCATCTACACACACGcgtgcatgcacaaacacacatgtgcacacacacacacacacacgtttgttttactatccttgttggACTGAATAatttattcccattcaaaatcctattttccctaacccctaaacctaagcATGACCCTAACTCTTAAAcctacccctaaacctaacccctaaccctaattgta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945738.1 True 4047 mRNA 0.44 2 31867097 31871227

Neighbor

gene id symbol gene type direction distance location
LOC110487017 LOC106605347 coding downstream 89310 31765201 ~ 31777787 (-)
LOC110486999 prdm1 coding downstream 218419 31631886 ~ 31648795 (-)
dctn3 LOC106605350 coding downstream 271369 31592146 ~ 31595728 (-)
LOC110486984 nt5c3 coding downstream 276255 31577445 ~ 31590842 (-)
trnap-agg-2 NA coding downstream 290238 31576788 ~ 31576859 (-)
LOC110534727 LOC106581127 coding upstream 17803 31889030 ~ 31892905 (-)
LOC110534740 NA coding upstream 26239 31897466 ~ 31906130 (-)
LOC110487053 LOC106605337 coding upstream 155999 32027226 ~ 32056238 (-)
LOC110487099 NA coding upstream 197591 32068818 ~ 32075136 (-)
LOC110487106 LOC106605335 coding upstream 224304 32095531 ~ 32218170 (-)
G132305 NA non-coding downstream 154012 31712874 ~ 31713085 (-)
G132286 NA non-coding downstream 170147 31696749 ~ 31696950 (-)
G132279 NA non-coding downstream 189358 31677466 ~ 31677739 (-)
G132278 NA non-coding downstream 194421 31672227 ~ 31672676 (-)
G132581 LOC106605342 non-coding upstream 42483 31913710 ~ 31915220 (-)
G132594 NA non-coding upstream 69489 31940716 ~ 31941065 (-)
G132612 NA non-coding upstream 107365 31978592 ~ 31979092 (-)
G132613 NA non-coding upstream 109223 31980450 ~ 31980955 (-)
G132614 NA non-coding upstream 110643 31981870 ~ 31982088 (-)
G132197 NA other downstream 324088 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 668285 31196917 ~ 31199241 (-)
LOC110486852 LOC106605360 other downstream 670805 31192419 ~ 31196292 (-)
trnae-cuc LOC106605367 other downstream 967533 30897026 ~ 30899564 (-)
LOC110514821 NA other upstream 867602 32738829 ~ 32756992 (-)
G134102 NA other upstream 876981 32748208 ~ 32788121 (-)
LOC110487618 LOC100380645 other upstream 1341437 33208500 ~ 33225125 (-)
G134668 NA other upstream 1994261 33865488 ~ 33865937 (-)
G135575 NA other upstream 2732988 34604215 ~ 34604478 (-)

Expression


Co-expression Network