LOC110534727 (LOC106581127)


Basic Information

Item Value
gene id LOC110534727
gene name LOC106581127
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31889030 ~ 31892905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110534727
ATGAATGTGGTGATGACAGGAAAGGCCACCCAGTCATCATGGTATGGGTGTTGGGTTTGCTAACAATGCCTTCGATGGGAACCGAAATGGTTTTCATGGCGATGGTTCCTGCACCCACACCAAAGCCAACTATAACCCCTGGTGGAGACTGGACCTCCTGAAGACCTACAAAGTGTTCTCTATCATCATCACTAACACAGTGGACAGTGTTCCCAACAGACTGAATTGAGCTGCGATCCGCATCGGAGACTCTCTGAACTGCAACATTGGCAACAACAATCCCAGGGGAACAAAAGTGTGTGCTGTGATCTCTATACCTGGGGGCTTCTCCAGCACCTTCCAGTGTAACGGGATGGAGGGTCGACACGTCAACGTGGTCATTCCAGGAAGAAGTGAACACCTGACCCTGTGTGAGGTGGAGGgaaactccaattccctaaAAAGTTTCACTAAGTCCTTGGCAAGCCCCCAGGGGTACAGACAGGACCGGGCGTCATGA

Function

NR:

description
PREDICTED: fucolectin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110534727 True 499 mRNA 0.51 3 31889030 31892905

Neighbor

gene id symbol gene type direction distance location
LOC100136303 LOC100136303 coding downstream 5969 31857694 ~ 31883061 (-)
LOC118939268 NA coding downstream 17803 31867097 ~ 31871227 (-)
LOC110487017 LOC106605347 coding downstream 111243 31765201 ~ 31777787 (-)
LOC110486999 prdm1 coding downstream 240352 31631886 ~ 31648795 (-)
dctn3 LOC106605350 coding downstream 293302 31592146 ~ 31595728 (-)
LOC110534740 NA coding upstream 4561 31897466 ~ 31906130 (-)
LOC110487053 LOC106605337 coding upstream 134321 32027226 ~ 32056238 (-)
LOC110487099 NA coding upstream 175913 32068818 ~ 32075136 (-)
LOC110487106 LOC106605335 coding upstream 202626 32095531 ~ 32218170 (-)
lysmd1 LOC106605332 coding upstream 475717 32368622 ~ 32370951 (-)
G132305 NA non-coding downstream 175945 31712874 ~ 31713085 (-)
G132286 NA non-coding downstream 192080 31696749 ~ 31696950 (-)
G132279 NA non-coding downstream 211291 31677466 ~ 31677739 (-)
G132278 NA non-coding downstream 216354 31672227 ~ 31672676 (-)
G132581 LOC106605342 non-coding upstream 20805 31913710 ~ 31915220 (-)
G132594 NA non-coding upstream 47811 31940716 ~ 31941065 (-)
G132612 NA non-coding upstream 85687 31978592 ~ 31979092 (-)
G132613 NA non-coding upstream 87545 31980450 ~ 31980955 (-)
G132614 NA non-coding upstream 88965 31981870 ~ 31982088 (-)
G132197 NA other downstream 346021 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 690218 31196917 ~ 31199241 (-)
LOC110486852 LOC106605360 other downstream 692738 31192419 ~ 31196292 (-)
trnae-cuc LOC106605367 other downstream 989466 30897026 ~ 30899564 (-)
LOC110514821 NA other upstream 845924 32738829 ~ 32756992 (-)
G134102 NA other upstream 855303 32748208 ~ 32788121 (-)
LOC110487618 LOC100380645 other upstream 1319759 33208500 ~ 33225125 (-)
G134668 NA other upstream 1972583 33865488 ~ 33865937 (-)
G135575 NA other upstream 2711310 34604215 ~ 34604478 (-)

Expression


Co-expression Network