LOC110534740


Basic Information

Item Value
gene id LOC110534740
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31897466 ~ 31906130 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110534740
ATGGATGCTGCCATGACCTTAAACCCCTGGTGGCAACTGGACCTGTTTAATAACTACAAAGTGTTCCACATGACCAACAGAAAGAACATGAATTATTACAGCAGACTCAATGGAGCTGAGATCCGCATCATAGATTCCCTGGATGACAACAATGACAACAACAATCCCAGCTCCCAGTGTAACAGGATGGAGGGTCGATACATCAGCGTGGTCATTCCAGGAAGAAGTGAACACCTGACCCTGTGTGAGGCGGAGGAAAATCTTGCCTTGTGGGGAAAAGCTACACAGTCAGACCTTGTCGATAACCCATATAACGGTTGGAGTCATGCCTCTAATGCCATTGACGGGAACCGCGATTCACATTTTTATCATGGGTCTTGCACTCACACTGACAGTCAGACTAACCCCTGGTGGAGAGTGGACCTGCTtgatacctacatcaCCTCCGTCACCATCACCAACAGAGGGGACTGCTGCCACACAAATATCAACGGTGCTAAATTCGTAATTGGGAAATCCTTACAGGATAATGGCATTCACAACACACTAGCTGGGGTGATTACCTCCATTCCAGCAGGTAGATCTCTCACTCTGAGTTGGAACAAAGGTATTGAAGGACGTTATGTGGCTGTGGTTCTACCAAAGACGAGCACTCTAGTACTCTGTGAAGTGGAGGTTTATGGGTACCTCGCCCCAACTGGAAAGAATGTGGCTCTACGGGGAAAAGCCACCCAGTCGTCATTGCATGGGTTTGGGTTTGCTTACAATGCCATTGATGGGAACCGTGACAATGCTATGGAACATGGCTCCTGCACTCACACTTCTGGTGACCTTAACCCCTGGTGGCGATTGGACCTGCTTAATACCTACAAAGTgttctccatcaccatcaccaacaGAAATAATCTTTCTTATTCCAGCAGACTGAATGGTGCTGAGATCCGTATTGGAGACTCCTTGGACGACAACAATGGCAACAACAATCCCAGGTGTGCTGTGATCTCCGCTTATCCAGCACCTTCAAGTGTAACGTGGTCATTCCAGGAAGGAAGGAGTACCTGACCCTGTGTGAGGTGGAGGTCTATGGGTCACCACTGGACTGACAGATCCAGAACATTTATTCCTAAAACTGAACGTGAAGCGCAGGACACACTGTTTTGTGGGCTTAATATGCTTAGATAACTTATATGTAGGTAACATTCTCTCTGTAAGGAAAAGCCATGTTGAAATTCATTTAACAGTTTAGCTTTATAATTTCACATGGTAAATATAGGTATATTGAGTACATTCATTTAGATCTGTTTTATTGTAACTGTACATACTGTAACGGCTCCtaacattgtactgtattgtatgttAATGTATTTGGAGGAGATAAAGGGTAACACAACACGTACGGTTCAGAGTAATTTCTTAATGTCATCTAGAAAGCAatgatcaaatatattttgataggAATATTATGGCCTGTGATATGTCTATTCACGTGGGTTTCATGAACACGTCAGTAGCTATAACAATTAAATAATGATGAGACGGGAGATGGGAATCAATTCAACCATTTATCTAGAATGTGCACAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110534740 True 1581 mRNA 0.44 7 31897466 31906130

Neighbor

gene id symbol gene type direction distance location
LOC110534727 LOC106581127 coding downstream 4561 31889030 ~ 31892905 (-)
LOC100136303 LOC100136303 coding downstream 14405 31857694 ~ 31883061 (-)
LOC118939268 NA coding downstream 26239 31867097 ~ 31871227 (-)
LOC110487017 LOC106605347 coding downstream 119679 31765201 ~ 31777787 (-)
LOC110486999 prdm1 coding downstream 248788 31631886 ~ 31648795 (-)
LOC110487053 LOC106605337 coding upstream 121096 32027226 ~ 32056238 (-)
LOC110487099 NA coding upstream 162688 32068818 ~ 32075136 (-)
LOC110487106 LOC106605335 coding upstream 189401 32095531 ~ 32218170 (-)
lysmd1 LOC106605332 coding upstream 462492 32368622 ~ 32370951 (-)
LOC110487143 tmod4 coding upstream 468492 32374622 ~ 32387882 (-)
G132305 NA non-coding downstream 184381 31712874 ~ 31713085 (-)
G132286 NA non-coding downstream 200516 31696749 ~ 31696950 (-)
G132279 NA non-coding downstream 219727 31677466 ~ 31677739 (-)
G132278 NA non-coding downstream 224790 31672227 ~ 31672676 (-)
G132581 LOC106605342 non-coding upstream 7580 31913710 ~ 31915220 (-)
G132594 NA non-coding upstream 34586 31940716 ~ 31941065 (-)
G132612 NA non-coding upstream 72462 31978592 ~ 31979092 (-)
G132613 NA non-coding upstream 74320 31980450 ~ 31980955 (-)
G132614 NA non-coding upstream 75740 31981870 ~ 31982088 (-)
G132197 NA other downstream 354457 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 698654 31196917 ~ 31199241 (-)
LOC110486852 LOC106605360 other downstream 701174 31192419 ~ 31196292 (-)
trnae-cuc LOC106605367 other downstream 997902 30897026 ~ 30899564 (-)
LOC110514821 NA other upstream 832699 32738829 ~ 32756992 (-)
G134102 NA other upstream 842078 32748208 ~ 32788121 (-)
LOC110487618 LOC100380645 other upstream 1306534 33208500 ~ 33225125 (-)
G134668 NA other upstream 1959358 33865488 ~ 33865937 (-)
G135575 NA other upstream 2698085 34604215 ~ 34604478 (-)

Expression


Co-expression Network