Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110487089 |
| gene name | LOC106581052 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 31985359 ~ 31987549 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: elongator complex protein 6-like isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0030335 | positive regulation of cell migration | biological_process |
| GO:0033588 | elongator holoenzyme complex | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC110487089 | True | 1334 | mRNA | 0.43 | 5 | 31985359 | 31987549 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110487045 | LOC106581064 | coding | upstream | 10758 | 31941966 ~ 31974601 (+) |
| LOC110487037 | LOC106605342 | coding | upstream | 52205 | 31913680 ~ 31933154 (+) |
| LOC110534719 | LOC106605346 | coding | upstream | 127764 | 31841738 ~ 31857595 (+) |
| LOC110486995 | atg5 | coding | upstream | 361345 | 31589474 ~ 31624014 (+) |
| eaf1 | LOC106581241 | coding | upstream | 619037 | 31360408 ~ 31366322 (+) |
| LOC110534747 | LOC106605338 | coding | downstream | 135 | 31987684 ~ 32027099 (+) |
| LOC110487062 | LOC106605340 | coding | downstream | 68970 | 32056519 ~ 32063386 (+) |
| LOC110487115 | LOC106580947 | coding | downstream | 344542 | 32332091 ~ 32348968 (+) |
| tnfaip8l2b | LOC106605333 | coding | downstream | 369379 | 32356928 ~ 32365347 (+) |
| scnm1 | scnm1 | coding | downstream | 383253 | 32370802 ~ 32373873 (+) |
| G132443 | NA | non-coding | upstream | 3074 | 31981875 ~ 31982285 (+) |
| G132442 | NA | non-coding | upstream | 3742 | 31981369 ~ 31981617 (+) |
| G132441 | NA | non-coding | upstream | 5669 | 31979588 ~ 31979690 (+) |
| G132439 | NA | non-coding | upstream | 8183 | 31976960 ~ 31977176 (+) |
| G132417 | NA | non-coding | upstream | 45940 | 31939195 ~ 31939419 (+) |
| G132451 | NA | non-coding | downstream | 47005 | 32034554 ~ 32034921 (+) |
| G132468 | NA | non-coding | downstream | 81278 | 32068827 ~ 32070846 (+) |
| G132669 | NA | non-coding | downstream | 103219 | 32090768 ~ 32091153 (+) |
| G132671 | NA | non-coding | downstream | 104110 | 32091659 ~ 32091914 (+) |
| G132912 | NA | non-coding | downstream | 318982 | 32306531 ~ 32306857 (+) |
| G132342 | LOC100136303 | other | upstream | 97787 | 31834170 ~ 31887572 (+) |
| LOC110534710 | LOC106605356 | other | upstream | 692325 | 31262054 ~ 31294577 (+) |
| G131517 | ccne2 | other | upstream | 1235405 | 30748055 ~ 30749954 (+) |
| G131491 | NA | other | upstream | 1284736 | 30700182 ~ 30700623 (+) |
| G133473 | LOC106605294 | other | downstream | 1179889 | 33167438 ~ 33169378 (+) |
| G133663 | LOC106605282 | other | downstream | 1508905 | 33496454 ~ 33497285 (+) |
| G133760 | LOC106605274 | other | downstream | 1826484 | 33814033 ~ 33814483 (+) |
| G134735 | LOC100136012 | other | downstream | 1974868 | 33962417 ~ 33962658 (+) |
| si:dkey-30e9.6 | LOC106605205 | other | downstream | 2700406 | 34687955 ~ 34692286 (+) |
