LOC110487053 (LOC106605337)


Basic Information

Item Value
gene id LOC110487053
gene name LOC106605337
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32027226 ~ 32056238 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945753.1
GTTTCCTGTTGAAGTGTAAAGGGAGACATGACACAGTTGTTTGGGGATGATAAGAAACAATATATAGAAATCCACTGAATTAAAAACTGCTGAAGTGATATTTAAATTGAAGTCACTTTAACTCAGACTCGGTGCAGTCGCTGGCCGCGATGGAGGCGGTCCCCCGTATGCCAATGATCTGGCTGGATCTGAAAGAGGCAGGGGAGTTCGAGTTCAGCCCGTCGGTGAGGCAGTTCATCCTGAAGAACTATGGGGAGAATCCAGACAGCTATAATGAACAACTGAAGAAGCTAGAGACACTGAGACAGGGTGCGGTGAATGTGACGCGGGACTTTGAGGGCTGCAGCATTTTGAGGAAGTACTTTGGGCAGCTGCACTACCTCCAGAGCCGTGTGCCTCTGGGGCCGGGGCAGGAAGCAGCAGTACCCATCTCATGGACAGAAATATTTTCTGGAAAAACAGTCACTCATGATGACATCAGCTATGAGCAAGCCTGCATCCTCTACAACCTGGGTGCTCTCCACTCCATGTTGGGAGCCATGGATAACAGGGTGTCCGAAGAGggGATGAAGGTGTCATGTACACACTTCCAGTGCTCCGCGGGGGCCTTCTCCTACCTGAGGGACCACTTCAGCCACAACTTCAGCGTGGACATGAGTCACCAGATCCTTAACCTCAACATCAACCTCATGCTGGGTCAGGCTCAGGAGTGTCTCCTGGAGAAGTCCATGCTGGACAACAGGAAGAGTTTCCTTGTAGCCCGCATCAGTGCTCAGGTGGTGGACTACTATAAGGAGGCATGCAGGGCTCTGGAGAACTCTGACACAGCCTCCATGCTGGGTAAGATCCAGAAGGACTGGAAGAAACTGGTGCAAATGAAGATCTACTACTTTGCCTCCATCGCTCATCTGCATATGGGGAAGCAGGCTGAGGAGCAACAGAAATATGGAGAGCGGCTGGCTTACCTGCAGAGCTCCTTAGACAAACTAAGTGAAGCCATCAAGTTGGCCAAGGGTCAGCCGGACAGTGTGCAGGAGGCCTTGAAGTTCACCATGGACGTGATAGGGGGAAAGTTCAACTCTGCCAAGAAAGACAATGACTTCATCTACCATGAGACTGTGCCCTCGTTGGAGACTCTTGCTTCCGTCAAAGGTGCCCCCCTGGTGAAGGCCTTGCCCGTGAACCCAACTGATCCCAGTGTCACAGGACCAGACCTGTTTGCCAAGCTGGTGCCCATGGCTGCCCACGaggcctcctctctctacagtgaagAGAAGGCCAAGTTGCTACGGGACATCATGGCCAAGATAGACAGCAGGAATGAGACTCTAGAGCAGTTTATGGACTCTCTGGGTCTGGAGCCAGACTCAGTAGATAACCTGGACATGTACAGTCACATCCCCCCTGTACTGATGGAGAAGTGTGCTGCACTCAGTGTCAGACCAGACACCGTCAAGAGCCTCATTCAGTCCATGCAGGtCTTGTCTGGTGTATTCACGGACGTGGAGGCGTCTCTGAGGGAGATCCGGGACGTGCTGGAGGAGGACGAGGCCGGGGTGCGGGCGCTGCAAGAGGCGGCAGGAGGAGGCCCCGCGGCGGAGTTGCACCCCCAGGCACATGCACAGACCCTGGCTGAGATCCGCAGGGACCTGGAGAAGTACATGGAGGCCCATGAGAAGGCCAGCTTCACCAACACCGAGCTGCACAGAGCCATGAACCTGCACATCAGTAACCTGAGGCTGCTGGGGGGACCACTGGATGCCCTGAGAGACGCCCTGCCGAGGCCCCAACTCAACCAGGAGGAGGTGGCGGGGCTGCAGTGCATGAAGAGGATCCTGGGTAAGGTGCAGGAGATGAGGGACCAGAGGAGCACCCTGGAAAAACAGCTGCGTGACCTCATCCAGCAGGACGACATCACTTCCTCCCTTGTCACTACCGAGCGCACTGACATGAAGaGGTTGTTTGAGGAGCAATTGAAGAAGTATGAGCAGGTGAAGGTGTACATCGACCAGAACCTGTCTGCCCAGGAGAACATCCTCAAGGCGCTGACGGAAGCCAACGTGCAATACGCCTCGGTCCGCAAGGGCCTCGCCGAGACGGAACACAAGTGGAACGGTACGGTGCAGACCCTGGTGGCGTCCTATGAGGCTTACGAGGACCTGATGAAGAAGTCCCAGGAGGGGAAGGAGTTCTACGAGGACCTGGAGACCAAGTCCTCCCGCCTGCTGGAGAGAGCTAAGACTCTGTGTcagggcagggaggaggagaggaaggccgTGCTGGACAGGGAGACCCAGAAGAATCCCCCTTCTCGGCCTACTGCAGCCAAACCGTCCCTTGGGTCCAAGGGGGGCTCAGACGTGGACTCTGCCTGTTCTAGTCTGGAGGATGCTGAGCTAGCCCAGATCAACGCTGCTATACTGAGCCTGGGAGGAGACCTGCCTGACGAGCTTCGTAGTCTACCCCCCGACCACCCCTCCCTGCACTCTGCCCTTCGCCCGGGACCTGAGGCTTTCCTTCCTGGTGCCAATCTGGGTGGCAATGCTTCGTTACCCTGGCCAGGGGCACCTGGGGCACCGCTCTATACCCCTCAGTTCCCCCCAAACCTTCGCCCGCACCATTTCCCTGGCCCGCTCCCCGCCCAGGGTTTCCCTCGTGGACCCTTCACTCAGCTACCCCCCCAGCAGACCCCTGTTTCTGGCTATGGCCCTCCCCAGCCGCAAGCCCCCCAAACTGGGGGAGTCGGGCCTGCCCGTGCCCCTTTCCGTCCCTCCACTActacagtagatagtatccagaccCCCATCCCCAGTTATAACTCAGCCCCACGCCACCCTGTACCACATACTGTCTCTGCAGGCTACGCTGTTCCCCCACAGATGGGTGTGTACCCACAGTACATGACCCAGCCTGGGGTGCCCATGCAAGTGCCCAGCCAGGtaccacaccaacatccacagCAGCAGTACCAACACCCTCCTGGGCAGCTGCCCCCTGGCTACCAGTCTGCCCCCAGGGCTATGCCCGGGCCCCGACCCCAGGCCCAGCAGGGTTACCCACAGTACATGCCCCCCCAGCACCAGCCCCGGCCACCCATGCCCCCCCAGTATCAACAACCATATCCTGGTCAGCCCCAGCCACAaccccagcatggctaccagcccCAGTTACCACAGGGCTATCATCCTCAACACCCTCAGCAGGGCTACCCACCCCAACAGCCCCAACACATGATCCCAAGGGGCCCTCACCCACAGATGCCCCCCACTGTCCAGCCCATGCCCCCTGTCGCCCAACCATACATGCAACCTGCCAACCAACAGATGCCCCTGCACCCTCATCAGCAGATGCTACCTTCCCAACAACAACAAATGCATCCCAACACCCAGCAAATGCACCCTCATCCACAAATGCACCGTGGCCCTCATCAGCAGATGCCCGCTAACAGCCAGCTGATGCCCTCAGTTTCCCAGGCTTACCTGCCCCCCACCAGCCAGCCCATGCCCCCTGGCCTGCACCAGCAGATGCCCCCTGCTTCCCAGCCCCATCATGTCCACCTCCCTCAGGCTTACCTGCCCAGGGGCCCCCTCCCACCTCAGGGGCCTCAGATGCCCCACCCTGGTCAACCCCCCCAACATGTCTATCAGCCCCAGTTACCACAGGGCTACCAGCCTCCTATAATGCCTCATTCAGCCCCCCAACAGTCCCAGGCTCCCCAACCTGTAGCCCCCATGACCCCCACCATGTACGCTACTCCTTCAGGTGTGAACGGCTCTCCCGGAGCCCCACCACAGCCCACCTCTATGGGCCAACCTCGGCCTCCTCCCCAGCACATGATTCCACCAACTGCTGGAGCTCCTCCAGTGGCCCTCCCACCTAATGTCATCCTTCCCTCGTCCtcaccttccccttctccctccccaggCCCCTCTTCCCTAGGCCTGGCCCCCCAGAGGCCCTCCCCAGCCCCCACCCCTGGCggtccaccctctctcccttcctcctcatccccctccacctccctcttcccGCGCCAGAACTCCATCACAGACGACCTGCTCTCCTCCAGCCCAGAGAGCCAGCCCGGTGGCCCCAAAGCCCCCGCCAACGTCCTCCAACCCACCAAGGCTGACCCTCAGGACGGGGAGCGCCGCAAGAAGAGCTCCCAGGGCATCCGGCTGATCCAGGGCGACCCGTACCAAGCCCCCGAACGCGTAGCCCGCCTCTGCGGCGAACTCGAACGCTTCCGGTTGGCCGTGGAGTCTCTGGAGCGCCCGTCGGTGGACGAAGGTGGCCTGTCGCCGCTGGATGCCCGCTGGAAGGAGCTCCAGGAGGGGCAGGAGAGGGACGCCAGGCAGCTGTCCATCGCCATCGCCCGCTGCTACACCATGAAGAACCGTCACCAGGACGTGATGCCCTACGACTGTAACCGCGTCCTACTGCGCTCGGGCAAGGACGACTACATCAACGGCAGCTTTGTGGAGGAGCTGTCGCCCTACTGCCCGCGCCTCATCGCCACGCAGGCGCCGCTGTCGGGCACGGCCGCCGACTTCTGGCTCATGGTGTGGGAGCAGAAGGTTTCGCTGGTGGTCATGCTGGTCTCAGAGCAGGAGTTAGATAAGGGAAAGGTTTTGCGATATTTCCCGACAGAACGCGGCCAGCAGCTTGCTCAGGGACCAATCACAGTCACCCTGACTACGCAGAAGACCACGCCCACCCACGTGGAGCGAATGATTGGCCTGCAATATCGTGACCAGAGCCTCAAACGCACTGTCATACACCTACAGTTCACCTCCTGGCCTGAGCTggGTCTTCCTGAGAGCAAGAGCAATCTAATCTGCTTCATCCAGGAGGTTCATGGATACTACCTGCACCAGAGGCCCTTACACACACCTATTGTTGTGCACTGCAGCTCTGGCGTGGGGCGTACCGGCGCCCTCTGTCTGCTGTATGCAGCGGTACAGGAGCTGGAGGCAGGGAACAGCATCCCTGACCTACCTCTACTGGTCAAGAAGATGAGGCAGCAGAGGAAGAACATGTTGCAGGAGAAGCTGCACCTGAAGTTCTGTTATGAGGCGGTGCTGAAACACGCTGAGCAGGTCCTCCAGAGACACGGCTACCTCCCTACCGCCCCCTGCAGCAAGACACCCAGCACTGCTGCCACCAAGCCTTACTCTCGCCAGGAGTCGCAACAGGACATCGTTCTGGGAGGTGACATGACCATCAGCTCCATTCAGGCCACCATCGCCAAACTCAGCATCCGGCCTCCCAGTGCCACTGACCCAGCCATGGACCCTGTCCTCGACAGTGGGGCttcctctggtctggaggaccaACCCTTCAACCCCCCCACCGACCTGCCCTTGGATAGAGAGCTAGAGCCAGCCACCGCCCCCGCCCGGGACCCCTCTCCCAGCAAGACCCAACCCTCCTCCCTCAgtcccctactctcctccccaGAGAAGGTTCAGTCCCCATCACCCAATGGTGTGGATGCCACcgccccttcctctccccccacAGGCAATAACCATGCAGTCCCAGAGGTGACCCCTGATCCAGCCCCTCCCTCTGGCCCGGCCCCAAACTCCCTGGAGCTGCTGGCCTCGCTGACTCCCGAGGCCTTCTCCATGGAGGGTGGTGGGTGCAAGGGCAAGCACCGTGTCACTAAGCAGAGCTTCCTGCAGCCTGCCGAGGGCCAGGGCCTCCACCAGGGGCCCAGCGAGGAGGGGGGAGACGACCCCCTGAGCAGCCTAGACCCCCTCTGGAGCCTCAACAGGAACTGAAACACAGGAGCCACGACgccctctttctttctcacttcaTAGCCGTGTGTCAAACTGACCTGTAGCCTTTAGTACTAGTTCTTCTTGATTCTCTGATTCTTAGTTAATTAACCAAAATGACTAGAATGATGGAAACTCCAAGAATCACAACTAGAAGTGCTTAgtggtaggggctaggggttggttTGAACCTGGGCCTTTCTGTTGCTTCAGGGGTCATACATTCTGCCTCCCATCACTGGTAGCCTGGCTGTGCTTCTGGGACCAAATCATGGAGCACTCGtcttttctttccttctctttgtcTGTGTTTCTACCTGTACCAGATGGGACTGTTCTTCACTCCATGCTTCAGAGCTGGCCACTCGGCATCACTACAATCCCAGCACGCCCTCCTAGCAGCAGTTTCTATGGTCCCCTCGTACAGCTGGTCGCTCCAGGCACGGGGTTGGCTTGGGCTCTTCATGTGGACTAAGATGATGACGGTAGTGACTGATATGGTTGCACTAAGGTGACGCAGACAGAGGCCAAAGGGTGGGGGAGGAGCCTGCAGATGAAGGTGTTGTTGTGTTAACCGCATGCATACATGAATCGGCACATCTTAAGATTTTTTTCTTGTCTTTCATTAACACTGTAAATATATCTTGAATAAATGTAGACTACCCTCATGTTA

Function

NR:

description
tyrosine-protein phosphatase non-receptor type 23-like

GO: NA

KEGG:

id description
K18040 PTPN23; tyrosine-protein phosphatase non-receptor type 23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945753.1 True 6459 mRNA 0.59 23 32027226 32056238

Neighbor

gene id symbol gene type direction distance location
LOC110534740 NA coding downstream 121096 31897466 ~ 31906130 (-)
LOC110534727 LOC106581127 coding downstream 134321 31889030 ~ 31892905 (-)
LOC100136303 LOC100136303 coding downstream 144165 31857694 ~ 31883061 (-)
LOC118939268 NA coding downstream 155999 31867097 ~ 31871227 (-)
LOC110487017 LOC106605347 coding downstream 249439 31765201 ~ 31777787 (-)
LOC110487099 NA coding upstream 12580 32068818 ~ 32075136 (-)
LOC110487106 LOC106605335 coding upstream 39293 32095531 ~ 32218170 (-)
lysmd1 LOC106605332 coding upstream 312384 32368622 ~ 32370951 (-)
LOC110487143 tmod4 coding upstream 318384 32374622 ~ 32387882 (-)
LOC110487180 mcl-1 coding upstream 371349 32427587 ~ 32429982 (-)
G132617 NA non-coding downstream 41854 31985139 ~ 31985372 (-)
G132615 NA non-coding downstream 44386 31982515 ~ 31982840 (-)
G132614 NA non-coding downstream 45138 31981870 ~ 31982088 (-)
G132613 NA non-coding downstream 46271 31980450 ~ 31980955 (-)
G132612 NA non-coding downstream 48134 31978592 ~ 31979092 (-)
G133048 NA non-coding upstream 250704 32306942 ~ 32307262 (-)
G133077 LOC106580947 non-coding upstream 281772 32338010 ~ 32338999 (-)
G133085 NA non-coding upstream 293984 32350222 ~ 32350448 (-)
G133063 NA non-coding upstream 310451 32366689 ~ 32367374 (-)
G133099 NA non-coding upstream 341992 32398230 ~ 32399418 (-)
LOC110486999 prdm1 other downstream 378431 31631886 ~ 31648795 (-)
G132197 NA other downstream 484217 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 828414 31196917 ~ 31199241 (-)
LOC110486852 LOC106605360 other downstream 830934 31192419 ~ 31196292 (-)
trnae-cuc LOC106605367 other downstream 1127662 30897026 ~ 30899564 (-)
LOC110514821 NA other upstream 682591 32738829 ~ 32756992 (-)
G134102 NA other upstream 691970 32748208 ~ 32788121 (-)
LOC110487618 LOC100380645 other upstream 1156426 33208500 ~ 33225125 (-)
G134668 NA other upstream 1809250 33865488 ~ 33865937 (-)
G135575 NA other upstream 2547977 34604215 ~ 34604478 (-)

Expression


Co-expression Network