LOC110487099


Basic Information

Item Value
gene id LOC110487099
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32068818 ~ 32075136 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468177.2
CTGCACATTTTACAATTATCTAACAATAAGGTTGTGGAAGAACCAATTATTCGTACGTCTCAAACAGAAGCTTGTCAATTTGCTATGtcatgaaacacacagacagaaccacaCCTTGCTTTCTCTCGTGCACTTACACCTGTAAGGATGGATTACTATGGCAACAGGTTGCCACTGGCAACGAGATAGCCTACTACATCACTTTGGTGGGAGTGAGTGAGGGGGACGACAAAAGCTCTGGGTGGATGAGCAGGCAGAAATATTAACAGCTTGAAAGAAAGAGATTGAAAATGGAGAGCAGGGTATGTTTAGATaaaatgcttgtttttgtttttctcgCAAAATACTGAAAAATATGTGGCTATTCATAAATGTATTGCCTTTGGTGCGCGCGCTGACGGAATTTCCCGCGCTCTTCTGATACAACAGGAGCCACCAGTGCTCCAGTATCTTACCACATCTGAAAGTGATTATCTGAGGAAGGCAGGAGGAGCAGTGACGAAATGGATGAGGGGTCCAGGATGGCTGAGGGGAAGGCTGCCTTTGTcttcgtcctcctcctcttcatcgccCTGGCCTTGCTCATCGTGCGCTGCTTCCGCATCCTGCTGGACCCATACCGCAGCATGCCCTCCTCCAACTGGACAGACCACACGGAGAAGGACACGTTTGACTACCGCATTGTCTAAGGAGGACCTAAGGAGCTCCCTCGACACTGTATTGCAGTGTCCTTCTCCGTGTGGAGAAGGAGCTCCCTTGACACTGAAGCACTGTCAAATATTGCAATGCTCGAGGAGCAACTTTGTTTATCCATTTTGCCCAAGGACCACATGCTGTATGACTGCTGGTGCCAAACCACCAGTGGCACCTTTGGATTAGAAGCAGCCTTCGAGCATGCATCACCTAAAACCTTTCTTTGTCTGCTCTATTGTAACATGTTGTATCAATTGCTTCACCAATTACTGCAGTCATAAGCAGTAATTGCCAGCCCTTATTACCCTAATGACAACACATACGAGTGATTCCATATGAAACCAGGACAAAAAAGGACATAATTTTGCagataaaaaaaaagattttatcCATAGAATGGTCCTTTGTAAGAAAgattgttgacatatatttgacatatatttgacatttgtatctaaaagcataattgagaaataatttATCTAAGTTGTCATATTTATGACATTTTGGCCTTTCCCAGGAGTCCTTAAATGTGCATGATGTGCAATGATGCAAGTAaaaggagggctgtgattggttacatTGCCTGCTGTGCCAATTTCTCAATATGAAACGGTCAATAAAATTAAAACTAGCAGAGATCCCACCATGGAACTTTGATATGCCCCTAGagtatattatgttcaacaatatattgaaacattttcaatattcatgtttgtatttttaaatattaatatattatataaatattatataatataaatattataatattatataaatatatatgaatgtaCAAAAATGTTATTGAAATCATAATACTACTCATATTACAGAGCAAGCGTTAAAGTTTAATATGACACCAATTTTAGCTTTTTAGCATCTACAGAGGAAAGATTGTGGAGTCTTACAGGAGGCCTGGGTAAGGCAAAAATGCCATAATATGGCAACTTTGATTTAGTAATTCTCAGTTATGCTTTCCTCCAAAGGACCATTCTATGGATTAAATGTTGCGAAAATCCCTAAATCATGGTATTTTATTTGTTCTGGTTTCATATGGAATCACTTATAAGGAACATCTTCTACCAAATGGCCAACACTTCTACCAAATGCCTAACACTATAGGCATCATCTAAGGTACCTGCTATCATATCTAACTCCCGAAGACACACTCCAGGCTAACTCGTTGCCACTACTATTGCATTATTTCACTACCCCATCCCCTTAACCCTTTACTGCGGTGGGCTAAActagggtcacacagtgtttcttagtagtcttaaacaaatctactcaGAAGAAATGTATACACCTTAtgcacatggttatgggtttaaaaaaataagacaaTTTTACCAAGTCAGATAtatagttgaaatgtattacattttgagtttgcatcccaatattacattttatatacatcacagaatacTGAAATATAACACAACTGTTTGACATAGCAACACTggatgtttattaattatgaaactatgagaaatattaataacattccacccatgagaccacttttggtcatttgactgcaggaaagggctacaggtGCTCTATGCAACAGTTCCTCCTGCAAATAGGCCTACATTTCAATTGTGTACTTGTAGTAGTAAAGGAATAAAACTCCATGTAAGAACAAGGAAAACATTTGAATGCTGCTTGAAGCTATAAAGTTGCTTGTTTGCGGCAAGGTCCTCAGTATATAAACAGTGTATCCTGTGGAATTTTTGACTTCAATTGTCCACTTTGGCCAAGGTACAAAATGCACAAACAATCAATCAAGCATCGCTCAAACAAAAATACACTTACACAGAAAAAACAAATGTAGTTACATTTATGCCAACCAGCGCCTTGTGCACTCACAAAGACCCTGACCCTCATTGAGCTGGTTGATACTTTTTGAAATTGGAAGAGAGATATTTCCTTTAACATCAGCCAGCCTATAACATAACATTGATATCCATATCTTTGTCACCCAGGTTCTTTGTTTTCTTGCCATCGTGGAAAGAGAGGTAGACAATGTTTCAAAGTATCCTTTAAAGAGACTTCATTGTTTTTCGGGAGGCTTCAATGGGCCTTAGATGTTTGATGTCAGCAGTGGGATAAGTGTTAACTATTCAATGTCTGCAATCAAAAAAATGACAAATCACTTTTAATGTAAAGGATCCAGAGTCATAAATCTAAATGACCAAATGAGGTTTATTGAAATGTTTACTGTGCCGTAACTTGTGCCTAATTATGAACATCTGGATGAGTCGAAAGATTCATTCCAGTAGTTCTGTCGTAGATAACATCTTGCTATAGTTCTATGTAATATCCTTTTCATATCTGAAATAAAATAAAGCATATCACTGCCTACAGATGGCATGTTAGCAGTGTGCTACATCTGAACAGATTATCACACCTTGGACGATCCCTTTATGGACAATGTCTGTGGCTCTTTCTTTGGGCAACTACTTAACTGTACGCCTTATAGAGTAGCATGTTTACAGATAGTCAATAGATGACAGAAAAATATGTTATGCACTTCAAGCAGATGTCATACACCTACCAAATGAGTGTGCTTTCACACTTTGACATGTGATGTTCTTGTGATATACTGTGGCCTTTTCCTATCACAATGTATCAGTTTAGTGGTACCTTTCTGTGCACAAGTGTCTTTGCATGTTTATGCAAAGTTTCCCCTCCAAGCATGTTGGGTGCTTTACGCATGTTGATGCTGCTGTTATTTagttggtacagtacagtattcacTGTCAACGTTTGAGCCTTCTTTTGAACATGTATTATGCTTGCCTTGAGCCTCTTTCCTTTCATAATAAAAGTAATTACGA

Function

NR:

description
PREDICTED: cortexin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468177.2 True 3545 mRNA 0.38 2 32068818 32075136

Neighbor

gene id symbol gene type direction distance location
LOC110487053 LOC106605337 coding downstream 12580 32027226 ~ 32056238 (-)
LOC110534740 NA coding downstream 162688 31897466 ~ 31906130 (-)
LOC110534727 LOC106581127 coding downstream 175913 31889030 ~ 31892905 (-)
LOC100136303 LOC100136303 coding downstream 185757 31857694 ~ 31883061 (-)
LOC118939268 NA coding downstream 197591 31867097 ~ 31871227 (-)
LOC110487106 LOC106605335 coding upstream 20395 32095531 ~ 32218170 (-)
lysmd1 LOC106605332 coding upstream 293486 32368622 ~ 32370951 (-)
LOC110487143 tmod4 coding upstream 299486 32374622 ~ 32387882 (-)
LOC110487180 mcl-1 coding upstream 352451 32427587 ~ 32429982 (-)
ensab ensa coding upstream 357331 32430455 ~ 32441999 (-)
G132631 NA non-coding downstream 23310 31998807 ~ 32045508 (-)
G132617 NA non-coding downstream 83446 31985139 ~ 31985372 (-)
G132615 NA non-coding downstream 85978 31982515 ~ 31982840 (-)
G132614 NA non-coding downstream 86730 31981870 ~ 31982088 (-)
G132613 NA non-coding downstream 87863 31980450 ~ 31980955 (-)
G133048 NA non-coding upstream 231806 32306942 ~ 32307262 (-)
G133077 LOC106580947 non-coding upstream 262874 32338010 ~ 32338999 (-)
G133085 NA non-coding upstream 275086 32350222 ~ 32350448 (-)
G133063 NA non-coding upstream 291553 32366689 ~ 32367374 (-)
G133099 NA non-coding upstream 323094 32398230 ~ 32399418 (-)
LOC110486999 prdm1 other downstream 420023 31631886 ~ 31648795 (-)
G132197 NA other downstream 525809 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 870006 31196917 ~ 31199241 (-)
LOC110486852 LOC106605360 other downstream 872526 31192419 ~ 31196292 (-)
trnae-cuc LOC106605367 other downstream 1169254 30897026 ~ 30899564 (-)
LOC110514821 NA other upstream 663693 32738829 ~ 32756992 (-)
G134102 NA other upstream 673072 32748208 ~ 32788121 (-)
LOC110487618 LOC100380645 other upstream 1137528 33208500 ~ 33225125 (-)
G134668 NA other upstream 1790352 33865488 ~ 33865937 (-)
G135575 NA other upstream 2529079 34604215 ~ 34604478 (-)

Expression


Co-expression Network