LOC110487143 (tmod4)


Basic Information

Item Value
gene id LOC110487143
gene name tmod4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32374622 ~ 32387882 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559071.2
ggagtggaggggagtggaggggaggggggtataGAAAAAAGAAAACCGGTGGGAGGGGATAGAAAAAAGAGAAACACCATTCTCGGGTTCCAACAGCAGGCTTTGCCTTGTAGAGGGCTCCAGCACTGCAACTCTGTGAAGAAAGTGCCCTGCTCTACCCCaggggtgtgtggtgtgtttgtgaccCTAGCTAGGAGCCCAGCCAGCCTGCAGATATGTCAAAAAGCGACCCCCGGGACATCGACGAGGATGCCATCCTCAAAGGGATGAGCCCTGAGGAGATAGAGGCGCTGGAGTGTGAGCTGCTGGAGATGGACCCCGAGAATGCCATCCTGCCAGCCGGGTACCGCCAGCGTGACCAAACCAAGAAGAGCCCAACGGGGGCGTTTGATCGTGACGCCCTGCTGGATCACTTAGAGAAAACAGCTCTGGAGCATGAGGACAGGGACGACCTAGTGCCTTTTACTGGCGAGAAGAAAGgGAGAGCGTTTGTTCCTAAGGAGGGCCATGGAAAGATCCCCGACCATGAGCAGATCACCCTGGAGCCTGAGCTGGAGGAGGCTCTGAAGAATGCCACTGACGCTGAGATGTGTGACATCGCAGCTATTCTGGGAATGTACACACTGATGAGCAACAAGCAGTACTACGACGCATTGGGCACCACTGGTACCATCGCCAACACAGAGGGCATCAACAGCGTAGTAAAACCAGATGCATTCAAGATCTTCCCAGACGAGCCCCCCAACCCCACAAACGTGGAGGAAACCCTTCAGCAGATCCAGAAAAACGACAGCAGCCTGTTTGATGTCAACCTCAACAACATCAAGGACATTCCCATCCCAACTCTGAAAGAGATCTTTGAGGCGATGAAGGGCAACACTCACGTGGAGTATCTGAGCATTGCCGCTACCCGTAGCAACGACCCCGTGGCCTATGCTGTTGCTGAGATGCTCCAGGAGAACACCACTCTGCAGAGTCTTAACATCGAGTCCAACTTCATCACCTGCGAGGGCATGAATGCCATCGTCAAGGCCATGGCCAACAACACCACACTGACCGAGATCAAGATTGACAACCAGAGACAGAAACTGGGGGACTCCTGTGAGATGGAGATTGCCACCATGTTGGAGAACAACTCCAGCATCGTAAAGATCGGCTACCACTTCACCCAGCAGGGGCCTCGGGCTAGAGCAGCCATCGCCATCACCAGGAACAATGACATAATTCGTCAACAGAGAGTAAGATGAGATGAGAGTGGAGCAACAAGATTGCGCTCACAAGACGCTAGCCTATCAATTCAGCCCCTTGGACCTAACAACTCAAACAACTGCCATTGACAGCTTTGCGCTAGCTTTGTCAATGGGGCGCAACAAACCCTCTGTGCTCCTCTCAAGGCCGGGTGTTCATTTCTATGTCTGTGTCCAAGCTTTCCATTTCATTAACCACAAATAGCTTTTTGTAGACCATTGAATTCATCATAAAAGCATTGTAAAAAAGTGTTGTAAAGTGTCATTTATGCTTCTAGACTGTGCCATGAAAACACACTCAGAAAATGACTGAACTCCTACATGGTGGTGGTGCAATATCTAGGAAAAGAAAATCTGTAAATactttaaataaaatgtttaaataattgtt

Function

symbol description
tmod4 Predicted to enable tropomyosin binding activity. Acts upstream of or within skeletal myofibril assembly. Predicted to be active in striated muscle thin filament. Is expressed in head muscle and myotome. Orthologous to human TMOD4 (tropomodulin 4).

NR:

description
tropomodulin-4-like

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005523 tropomyosin binding molecular_function

KEGG:

id description
K10370 TMOD; tropomodulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559071.2 True 1638 mRNA 0.51 10 32374622 32387882

Neighbor

gene id symbol gene type direction distance location
lysmd1 LOC106605332 coding downstream 3671 32368622 ~ 32370951 (-)
LOC110487106 LOC106605335 coding downstream 156452 32095531 ~ 32218170 (-)
LOC110487099 NA coding downstream 299486 32068818 ~ 32075136 (-)
LOC110487053 LOC106605337 coding downstream 318384 32027226 ~ 32056238 (-)
LOC110534740 NA coding downstream 468492 31897466 ~ 31906130 (-)
LOC110487180 mcl-1 coding upstream 39705 32427587 ~ 32429982 (-)
ensab ensa coding upstream 44585 32430455 ~ 32441999 (-)
LOC110487241 LOC106605328 coding upstream 101722 32489604 ~ 32497994 (-)
ctsk catk coding upstream 110921 32498803 ~ 32505857 (-)
rrnad1 cl026 coding upstream 204781 32592663 ~ 32597152 (-)
G133063 NA non-coding downstream 7248 32366689 ~ 32367374 (-)
G133085 NA non-coding downstream 24174 32350222 ~ 32350448 (-)
G133077 LOC106580947 non-coding downstream 35623 32338010 ~ 32338999 (-)
G133048 NA non-coding downstream 67360 32306942 ~ 32307262 (-)
G132631 NA non-coding downstream 329114 31998807 ~ 32045508 (-)
G133099 NA non-coding upstream 10348 32398230 ~ 32399418 (-)
G133100 NA non-coding upstream 17491 32405373 ~ 32406017 (-)
G133101 NA non-coding upstream 19027 32406909 ~ 32408081 (-)
G133105 NA non-coding upstream 25117 32412999 ~ 32413340 (-)
G133061 NA non-coding upstream 36354 32424236 ~ 32425339 (-)
LOC110486999 prdm1 other downstream 725827 31631886 ~ 31648795 (-)
G132197 NA other downstream 831613 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 1175810 31196917 ~ 31199241 (-)
LOC110486852 LOC106605360 other downstream 1178330 31192419 ~ 31196292 (-)
trnae-cuc LOC106605367 other downstream 1475058 30897026 ~ 30899564 (-)
LOC110514821 NA other upstream 350947 32738829 ~ 32756992 (-)
G134102 NA other upstream 360326 32748208 ~ 32788121 (-)
LOC110487618 LOC100380645 other upstream 824782 33208500 ~ 33225125 (-)
G134668 NA other upstream 1477606 33865488 ~ 33865937 (-)
G135575 NA other upstream 2216333 34604215 ~ 34604478 (-)

Expression


Co-expression Network