LOC110487241 (LOC106605328)


Basic Information

Item Value
gene id LOC110487241
gene name LOC106605328
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32489604 ~ 32497994 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559165.2
CGGTCAATGAGGAAGTTCTACCACATGACTTGCACAAATAAATATCAAGCAGGAAAACAGATCCCACTGAAATCAATTGACGCGCCTTGCTCTCCTCTGAAGTCATCATCAGGTGCAACCGAGTTTTACAAGGCATGATGTTGTGGAGCCTGCTGCTCGCTGTGCTATGTGGCACAGCAGTTGCCCTGTTTGACCCAATGCTGGAACAGCACTGGCAGATGTGGAAGAAGACACATAACAAGAACTACCAGACTGAGGTTGAGGAGCTGGGCCGAAGGGAGGTCTGGGAGAGGAATCTTCAGCTGATCAGCCTCCACAACCTCGAGGCATCCATGGACATGCACACCTATGACCTGGGCATGAATCACATGGGGGACATGACCCAGGAGGAGATTTCCCAGTCTTTTGCCTCATTGCGTGTTCCTACTGACCTCAAGAGGGAGCCCTCTGCATTTGTAGGATCCTCCGGTGCCCCCATACCTGATACCATTGACTGGAGAGAGAAGGGCTATGTCACTGGAGTCAAAATGCAGGGCTCCTGTGGCTCCTGCTGGGCATTCAGCTCTGTCGGGGCCCTGGAGGGCCAGCTGATGAAGACCACAGGTAAACTGATAGATCTCAGCCCCCAGAACCTGTTGGACTGCTCCACCAAATACGGCAATCAGGGCTGCCACGGTGGCTTCATGACCAAGGCCTTCCAGTATGTCATCGACAACCAGGGCATTGCCTCTGACCAATCCTACCCTTACAAGGGAGTGCAACAACAGTGTAGCTACAACCCTGCTCAGGGTGCTGCAAACTGTTCCAGATACAGCTTTCTGCCTGAGGGGGATGAGGGGGTTCTGAAAGAAGCACTGGCCATCATCGGACCTATCTCTGTCGGCGTTGATTCCACCCGACCTAATTTTGCCTTCTACCGCAGCGGAGTTTACAATGATCCAACTTGCACAAAGAAGACAAACCATGCTGTCCTTGCTGTGGGGTACGGTACCCTGGGCGGGCGGGATTACTGGCTGGTGAAGAACAGCTGGGGTTTATCGTGGGGAGACCAGGGATATATACGGATGTCACGCAACAAGGACAACCAGTGTGGCATCGCCTTGTACGGCTGCTACCCTGTCATGTAACTCATGCTAATCAACGTGGCCTAACTGGAAAAACGGAGCCCTTTTATTAATTGAATATAATTCATTTTTACTAGCTCCATTGTTTTAGTCTTGTTTTACCATTTCACTTTCTGTCACTTTCTGTCTATATAGACAGTACTTCTTTAAAATAGTTTTTAGATGTCATGTATAAGGCAATTGTGATTATCTACATTATCACTGTATCTAGCGTCCTGTCCAGCGGGTGTACTAGTACATCAAgttgcctcacactacagaaacaggagctAGGCTCTTGCTCGTATGAGCCGTTTTAGCTCGCACATGCCAAGGCTCGTGCAAAGCTACTTACTTGCTTAAATTAAAGTATATTTTGTCATTGAATAAATATAacttttaaagaa

Function

NR:

description
cathepsin S-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K01368 CTSS; cathepsin S

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559165.2 True 1510 mRNA 0.49 8 32489604 32497994

Neighbor

gene id symbol gene type direction distance location
ensab ensa coding downstream 47605 32430455 ~ 32441999 (-)
LOC110487180 mcl-1 coding downstream 59622 32427587 ~ 32429982 (-)
LOC110487143 tmod4 coding downstream 101722 32374622 ~ 32387882 (-)
lysmd1 LOC106605332 coding downstream 118653 32368622 ~ 32370951 (-)
LOC110487106 LOC106605335 coding downstream 271434 32095531 ~ 32218170 (-)
ctsk catk coding upstream 809 32498803 ~ 32505857 (-)
rrnad1 cl026 coding upstream 94669 32592663 ~ 32597152 (-)
LOC110487305 LOC106605321 coding upstream 134985 32632979 ~ 32640545 (-)
LOC110514821 NA coding upstream 242759 32738829 ~ 32756992 (-)
LOC110487362 NA coding upstream 272416 32770410 ~ 32775521 (-)
G133118 NA non-coding downstream 30227 32459146 ~ 32459377 (-)
G133115 NA non-coding downstream 34488 32454640 ~ 32455116 (-)
G133114 NA non-coding downstream 35657 32453719 ~ 32453947 (-)
G133113 NA non-coding downstream 36755 32452641 ~ 32452849 (-)
G133960 LOC106562530 non-coding upstream 11137 32509131 ~ 32509373 (-)
G133962 LOC100380853 non-coding upstream 12161 32510155 ~ 32510540 (-)
G133990 NA non-coding upstream 47781 32545775 ~ 32546003 (-)
G133992 NA non-coding upstream 49495 32547489 ~ 32547707 (-)
G134027 NA non-coding upstream 184616 32682610 ~ 32684723 (-)
LOC110486999 prdm1 other downstream 840809 31631886 ~ 31648795 (-)
G132197 NA other downstream 946595 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 1290792 31196917 ~ 31199241 (-)
LOC110486852 LOC106605360 other downstream 1293312 31192419 ~ 31196292 (-)
trnae-cuc LOC106605367 other downstream 1590040 30897026 ~ 30899564 (-)
G134102 NA other upstream 250214 32748208 ~ 32788121 (-)
LOC110487618 LOC100380645 other upstream 714670 33208500 ~ 33225125 (-)
G134668 NA other upstream 1367494 33865488 ~ 33865937 (-)
G135575 NA other upstream 2106221 34604215 ~ 34604478 (-)

Expression


Co-expression Network