ctsk (catk)


Basic Information

Item Value
gene id ctsk
gene name catk
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32498803 ~ 32505857 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945823.1
TGCGGAAACTTTTTCCCCTCCTAAATTTAGAACTCCCTTTGCACTTCCTCAAACTGCAGACTATATAACTGCTCACACAGTGACCTACTTCATCGTAGGGAAACAACTGGTCAAAGGAATTCATCCGACATCTTCTCTTCAAGTCTACGACCAAGAATGCTGCTGTGTGGTTGTGTACTGCTGTTCTTGGGCTCAGTCCTAGCCCATCCCCTGAACGAGATGTCACTGGAAGCACAGTGGGACTCCTGGAAGACCACCCACCTGAGAGAGTACAACGGCCTGGGGGAGGAGGCGATCCGTAGAACCATCTGGGAGAAGAACATGCGTCTGATCGAAGCCCACAATGAGGAGGCCGCTCTGGGCATTCACTCGTACGAGCTGGGCATGAACCACCTGGGAGACATGACGTCAGAGGAGATAGTTGAGAAGCTGACTGGCCTCCAGGTGCCCATGAACAGGGACCGTAGCAACACCTGGATCCCTGACAACAATGTGGTGAAGCTCCCCAGGTCCATCGACTACCGCAAGAAGGGCATGGTGACCCCAGTCAAGAACCAGCTCTCCTGTGGCTCCTGCTGGGCCTTCAGCTCTGCAGGGGCCCTGGAGGGCCAGCTGGCAAAGACCACAGGCAAACTGATAGACCTCAGCCCACAGAACCTGGTGGACTGTGTCACTGAGAACAATGGCTGTGGTGGAGGCTACATGACCAACGCCTTCGAATACGTTGAGGAAAACGGAGGCATCGACACAGAGGAGGCTTACCCTTACCTTGGCCAGGATGAGCAGTGTGTCTACAACGCGTCTGGCATGGGTGCTCAGTGTCGCGGGTTCAAGGAGATCCCTGAGGGAGACGAGTGGGCACTGACCAAGGCTGTAGTCAAAGTGGGGCCTGTGGCTGTGGGCATTGATGCCACCCTCTCCACCTTCCAATTCTACCAGAGAGGCGTGTACTACGACCCCAACTGCAACAAGGATGACATCAACCACGCCGTGCTTGCAGTGGGCTATGGACAAACTGCCAAGGGTGTGAAATTCTGGATCGTCAAGAACAGCTGGAGCGAGAGCTGGGGCAAACAGGGCTACATCATGATGGCACGTAACCGCGGGAATGCATGTGGCATTGCCAACCTGGCCAGTTACCCCATCATGTGAACACCAAGCGGCGGAGTGCACCATGGAGGCAGGGAAGCCAAACCACATAGCAATGACTACACACGATACAGAAAATAACACTATGTTTCTGGAATAGCACATTCATATAGTCTGGAAGTTTGGGTATCCCAGAGTTTTTTTTGCAACCTACTCAAGTCTTACTGTTATATCTTCAAACTGCCAGACTTCAATTGTAGTCTGATCTACAGTGGAACAACTATGATTGTGATGAGGAATCTGTGTAGTGCACAGCACTTTGCATAGGTTGTATTCAGTGTGTCAGGTCAGGTAACATTGCTGTGCAATGGGAGTTTTGTCTCACTTTCCTGTCAATGCAAAAAGGTATTAAACTTAGTAAATGTAAGTGTGTGTCGATCAAGATTGCTCCTGGTGGGTTTTTCTTTGAATGATGTTGACTTTTATTTTATTGTTCAGCACTTTTACACCAAAATCTGATGATTGAATTGTAACATTGCTTTCTATGAAATGGAATAAAAGTTGATTAATTTGAAA

Function

NR:

description
cathepsin K

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K01371 CTSK; cathepsin K

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945823.1 True 1665 mRNA 0.50 8 32498803 32505857

Neighbor

gene id symbol gene type direction distance location
LOC110487241 LOC106605328 coding downstream 809 32489604 ~ 32497994 (-)
ensab ensa coding downstream 56804 32430455 ~ 32441999 (-)
LOC110487180 mcl-1 coding downstream 68821 32427587 ~ 32429982 (-)
LOC110487143 tmod4 coding downstream 110921 32374622 ~ 32387882 (-)
lysmd1 LOC106605332 coding downstream 127852 32368622 ~ 32370951 (-)
rrnad1 cl026 coding upstream 86806 32592663 ~ 32597152 (-)
LOC110487305 LOC106605321 coding upstream 127122 32632979 ~ 32640545 (-)
LOC110514821 NA coding upstream 234896 32738829 ~ 32756992 (-)
LOC110487362 NA coding upstream 264553 32770410 ~ 32775521 (-)
LOC110487370 nes coding upstream 349908 32855765 ~ 32868211 (-)
G133118 NA non-coding downstream 39426 32459146 ~ 32459377 (-)
G133115 NA non-coding downstream 43687 32454640 ~ 32455116 (-)
G133114 NA non-coding downstream 44856 32453719 ~ 32453947 (-)
G133113 NA non-coding downstream 45954 32452641 ~ 32452849 (-)
G133960 LOC106562530 non-coding upstream 3274 32509131 ~ 32509373 (-)
G133962 LOC100380853 non-coding upstream 4298 32510155 ~ 32510540 (-)
G133990 NA non-coding upstream 39918 32545775 ~ 32546003 (-)
G133992 NA non-coding upstream 41632 32547489 ~ 32547707 (-)
G134027 NA non-coding upstream 176753 32682610 ~ 32684723 (-)
LOC110486999 prdm1 other downstream 850008 31631886 ~ 31648795 (-)
G132197 NA other downstream 955794 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 1299991 31196917 ~ 31199241 (-)
LOC110486852 LOC106605360 other downstream 1302511 31192419 ~ 31196292 (-)
trnae-cuc LOC106605367 other downstream 1599239 30897026 ~ 30899564 (-)
G134102 NA other upstream 242351 32748208 ~ 32788121 (-)
LOC110487618 LOC100380645 other upstream 706807 33208500 ~ 33225125 (-)
G134668 NA other upstream 1359631 33865488 ~ 33865937 (-)
G135575 NA other upstream 2098358 34604215 ~ 34604478 (-)

Expression


Co-expression Network