si:ch211-113g11.6 (LOC106605326)


Basic Information

Item Value
gene id si:ch211-113g11.6
gene name LOC106605326
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32550907 ~ 32568058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559185.2
CGCGACGCAAGCGGTGTGGTCAACCTATTAGAGAGTTTTGGAATTCACGCATGAAAGGGTTCGGGCACATTGAGGACGTGGAATGATGAATTATATCATATTGGCGACCGTTTTTTCCATGGTTTTTGCCGAAAAGTCACCTCGGCTGAAATTCATTGTAAAAGAGCCGGCCAGGTACCACTTCTCGAAACCGGAGAACTACATGTCAGTGTACCACCAGGAGGGCACAAATGTGCTGTACGTGGGGGGCCAGACAGTGATCTACGTGCTGACTTTCACTGACAGGGGGGTCCGCGACCTGCAGATCCCTGTGGTAACTGATGAAAACGCAAAGGCAGCTTGCATCGCCAAATCAGACCCACCAAAGtTGGAGTGTGACAATTTCATAACAGTCATTCAGAAAGTCAATGACACTTTTGTGGTATGCGGGACAAATGCAGGAACCCCCAAATGCTGGCTGCTGGTAAATGACACTGTGCTGACTGACGCCCCCACCAATGGACAGATGGCACCAGCCTCTGACAtctcccctccctacccctcccagAGGTCTGTCAGTCTGTCCGCAGaTGGGAATCTATACTCTGCTCTGTCAGCAGTGGGGCGTCACCCTGGCTCTATCCGCCGGACCTACGGCACTCAGAAGCTCCTGAAGACTGAGACCAAGTGGCTGCAGAgcccccagtttggtggagcagcagtaaTGCCAGCCTCTCAGAAACACAAGGAGGAGATCTACTTCTTCTTCAGTGAGATCAACAAGACGGCCATGGTGGACGAGGAGCCCTACAGGTCGCGCATCGGCCGAATCTGCATGGTGGACGAGGGGGGCATAAAGAACCTGCTGGCGGACTCGTGGACTACCTTCCTGAAGGCAAGGGTGATGTGTGGTGCGGGTAGCACCCCCCAGCAGTACAACAACATCAGACAGGCCTTTGTGCTGTCTGACGTGGCCAACGAGAAGAGGACTGGGGTCATGTACGGCCTGTTTGCCAACGCCTGGGACACAACAGTGATATGTGCTTACTCCATCGAGGACATTGACCAGGCCTTCGCCACGTCCAAACTGAAGGGTTACAGCAGTCCTCTGATTGGACATCGCCCTGGCACATGTGCCTTCAAGAACTCCACGGCAGCCCACAACCCTAAGACCCTAGTGGTGATCAGGGACCACCCGGAGATTGAGGACGTGATTAGTCCGGTCGGGGGAGCTCCGCTGAACCTGCCCACCGACGATCACTTCACACACACTGTCGCTGCCATTGTACTAGCAGTAAACGACGAGCACTATAGCGTGCTGTACCtgggaacagAACAGGGGAAAGTGCTCAAGGTTCTGCACACTATCGAGGAGGCCTTTATCATATCCCAGTACTCCCTCTTCCATAACGAGGGTCCTGTTCTAAGCATGGCCATCGACTCTAAGAAGGGCCACCTTTATGTGGGCACGGCAATGGAGGTCCAGCGCATACCATTGGCTGACTGCGGTCGCTATGGAGACAGTTGCCGGGAGTGCATTCTGTCTCGGGATCCCTATTGTGGTTGGGACGCAGCCAGGAGGAGGTGCACACCCATCCCAGCTGGATACAACATCAGCACTGGGGCACTAACTCAAAGTCTGGACCATTCCAATGCCTCTATCTGTGGTGAAGCTGCTGCACCGAAGACCCATAGGACAAACCCCAAACAGGTGGTGATTGACTCGGACGGCCCCGTTAACCTCCCCTGCCCCGTGCGCTCCTTTCACGCCACCTACCGCTGGGAGAAGGACAACTGTATCCAGCACTACCCCTGCTTCATCATTGGAGACTCCTGTGTGCTGGAACCCACCCCTGACCTGCCCCTTAAGCAGGGGGTGTTCCGCTGCATGGCCACGGAGAACGGCTACAAGGTGGAGGTGGTCTCCTACAGGCTGGTGATCAACAGTGGGCCTCTGCCTGCCTCCTTGGCCTCCACCCTGGGGCCCTGCCTCCTGCTTGCTGCAGCTACCCTCTGGCTCCTGTAACCATTGCAAATGCTAAAGCTAACCCCTTAGCCTCTaaggccctctctctgtcagacaaGAGAGGAGGGGCCACCATACCCAGATTAGGTTCGCAGAGCATTGCTATTAATGGTCGGGTAATGCGATTAGTGTTGCCCACAGAGACTGTTTTCAGaaaaagtgtttttttatttaatttacatTGTTCAGGAAATGCCTGAAAATAAACAAAGCCACTTATTTTTAAATTATATATGGGCTTACCATACTAATCAATACTGTACtgtttaaacaaaaaaaaatacctaAAACAAACTGAAAATACACAACATTTAAACTGAATTAATACATTAACATCAATATGGGTTTTATGGAAAGACAAACTATAATATCATGTCTTAGTCTGAATTTTAAATACAGATTCAAACCACAAGATGTGCTTTGCGAACCTTGCCTGTTCCACCCAAGAAATGACATCTCATGAGTTGCGTTAAATACCATATCAGGCCAATTTCTCAACTTATTTTTAAACTTGATTGTCCTACTTTGTGAATATTTGAAGCTTGAATACTGCTCTAACATCCAAACATCTTGTTGAATGTCATAAGTATAGGATAGTATTTAGAAAATGTCTGGTATTGTGTAGAAAAAAGCCTTAACAATTCTGAGACATACCTCCTAAGCACAATTTGCAGTGGAAGCAAAACTGATCAATTATGTTGACTTGAAACTGTGAATGAGGTGGCCAAGCCTTACTTTGATGCTGGGAGGAAGTGTCATCATTTTGACAAGAAGTCATATTTTTGACAGGAAGTAGGTAGAAGAACATGAGCTCATCCTCGAACATCACTGTGTCTCGGCAAGTCCTCTGCAGTAAAGGCCGTTTTTGCATCATTTTATTGGATAGTATCAGACATTCATATTATGCTACTTCATTTTCAATAAACATAAGTACAGTAAACATCATTCAGTGGCAGGTGAGGCCAAATCAGAATTGAGTAGATGACATGTAGAGTTAATGGCATTTTGCAGTTTGCTATATGAGAAAAAGCTTGTGATTATATGAGTACTGTGTGTTAGGTATTTTATTGCTCCGCAAATGCTGATTTCCACCATTGCTGCCTATGTATATGAAAGTTATTCTTGATGGTTCAAGGTTTTATACTGTGCGGAAGTCCCGAGAGGACAATAAAAAAATCCTTGTCATGGCGAGATAACTTATTTATCTCGTGAACACGACATAACAAAAGTTGTTTTGTCGACATCACGAGATGAATTCTATAAATAGGAGTAGACGCATTGATGATAGATTGACATTATGGCAGAGGCGATAGAGCCCATGGTGGATCAGCACATATATTTTTATTGATTGCTACACTAAGGGATGGTACATTTCATGCTAACATGTCGCTCATTGACAGTTTATAAATTAGAATGTTAGCAAGCTAAATGTCCCTTACCTTGAGCtaagagtggcaggtagcctagtggttagagcattgggccagtaactgaaaggttgctagatcaaatccctgagctaacaaagtacaaatatgtcattctgccctggaacaagacagttaacccactgttcctaggctgtcattgtaataagaatgtgttcttaactgacttgcctagttaaataaaggttaaaaaataaaagagCTCTTGGGGCATCTGATACCTGAAAGGCTGGCTTGTTTCCCAGGTGGTGTGCCAATTGCATGCAAGCAACAATGCAGCTAGTCTTGTGAGTGTCTTAGCTAGGTAgtcttattagctagctagcttgttataTATGCTGGTTGTTGTTAGCTTGCATAACTAATGTGTATAATTGTAAGGGGCACTTCATGTTTTATGGATAATATTACAATTTACAGCATGGGTGAGCTCAATTCCTGACTGATAAGATTATATTTCTTCCTCAGAGCTTGATCAGATTCAATAGCAGTCTCAGATTCCACCTTGTAGGGTGTTTCATAGGTACCGCTTCTTGCAGGCAGATTAGCAGTCAGTGCATTATGTATATGATCAAGACTGAGTGCGCTTGTTTCCTGGCAGGCTAATTTGATTCAGTAGCAGCCTCAGAGGCTGATAAGTCAGGATCCTGCCTAGTAGGGATCCTGCCTAGTAGGGTGTCTGCAAGGAGCCTTACATATGAAACAACCTACAAGGCAGCATCCTGATTTATCAGCTTCTGAGGCTGAAATGTAATCTGATCAGCCTGTCAGGAATGCAGCTCACCCACAGTAAATGTGTCAGGCATCGTTCAGGGCTTAAATGCCTCACTTTGCGATCAACACAGCCACAGGGCTCCTTGATGAAGTGGTTATCGTGCATCTGAAGAAATGAATGGATGATGCATGGTACTTTTGATTATCTCGTGATCGCGACAAAACAACTTTTGTTATGAAATTAATATGTCTTGATCTCGACATAACGAgggaactttaaaaaaaatcatatgtCCTCTCTGGGTTTCCGTAATACTGTGGTTATACAATGATATAACTCTTTGACTGCTTTAACTAACCTATTCTCAATGGGAAAATCCAATGCATAATTCTCAAAGGGGTTATTTTCATACTTGTATCTGTATGCTGTGACAAGCGCTTTACATAATTTGATGGGCTCCTTTTGTGAAGTAGAACACTTTGAGCAGCCACCATACTCTGGGGAGAAAGACTGAAATTAATGATTTACATATTTGGAAGATTTGGAACAAAATTCCTCTTTAAGCAATAGATGTTTTTTAATTTAGCACCTGACCTCAAAAAATAAAAGTATGTTGGAGACAGAGAATGTTTGCTGGGAGGGAGTGGTTTACTCAGAGCAAATGTTGAATGTAACATAGTAATATGAATGTAGTTGCAACAAAATGCAAGTCTATTGTTCCCATTTATTGATTGTAGTATCTCAGTACTGAAGCACCATCTTACAACCACTACGGTGTTTTGAACTGTGCCACTGAGCATTGTGGCAAATTTTGAAATGGCAAAAAACCACTGTCGCCTGAAAATATTGGTCGAAAACAGGCTACATACATGCTGTTCTTGGAACAGTTTTAGCCATAGTTCTGCAGGTTCCATCTTTCTCTCTGGGGGTGGCTGTACGTTTGTTGTCTCGAGGTCTCAGGAGGATCTGCCTGCTGCATTGCACTGATGCGGGATATTGACTGTGCCAAACATAAGCTGTGTTGTGCCGCCTCATCCGCCGCCTGCCGCTTCTCACTCACTTAGCACTTTGAGTAATTGGTTTCCCAAATCTCTTTCTCAAACTCACACATATTCTTAAATATGTCACAAATACACACAGGCATATCGGTGCGCACACACACCTCTTGTTTACCAATCACTCACTTCAATCTCATTCTCTTTACTGGAGCTGGTGTGTCTCTGAAAACAGTGAACAGAAGCCTCTCATACGCTAGCCAACACTAATTAGGCAACTGAACCTGTATCACTCACTGCAGAGAAATACAAGCTCTTTTACCAAGACAGATGGCCTAGAGTCACTGGGTATTGTTAAAAACGGTCAATGAATCATGTCTGTGCAGAGTTGATTGTATTTGGCCTTTCATGGATTTCAAAATTGATATGGGAGTTTCGTTTCTCTGGAGCACTTTATTTAATGACCACCTTCGTAGCCAGGAGTCCCTGCTATGACGTGGACATAAACAGTGGCTATATCGCATGCGGGCGATTATCCTTATCCTAGAAAGATTTAAACCGGTTTGTTTTTGTTCAATTTACCCGTCCGATAAATAATGCCAGCGGAGAAATAGAGTGAAGTGAATCTATTGTCTTTAAATCCTTTCTCTGGCGCTTTGGACAGTGTTGATTCTGTGTCTTAGTACGTTTTGTTACCAAAATCATTCTTTGTTTTAAGGACAGATGTCTGTCTATATGAAGTGTTAATACATGTCCATGTAACACATCTGTAACTCCATATGTTTCCTTTTACTGAACATGTACAGTGAAAATCAATAAAGTAATCAACTACAGTA

Function

NR:

description
semaphorin-7A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559185.2 True 5999 mRNA 0.45 14 32550907 32568058

Neighbor

gene id symbol gene type direction distance location
lingo4b LOC106605327 coding upstream 7170 32525732 ~ 32543737 (+)
onecutl LOC106605329 coding upstream 61463 32477650 ~ 32489444 (+)
hormad1 hormad1 coding upstream 95661 32442246 ~ 32455246 (+)
scnm1 scnm1 coding upstream 177034 32370802 ~ 32373873 (+)
tnfaip8l2b LOC106605333 coding upstream 185560 32356928 ~ 32365347 (+)
tlr18 LOC106580799 coding downstream 1382 32569440 ~ 32582549 (+)
LOC110487342 LOC106605324 coding downstream 21131 32589189 ~ 32592242 (+)
isg20l2 isg20l2 coding downstream 29043 32597101 ~ 32605620 (+)
LOC110534753 LOC106605320 coding downstream 40204 32608262 ~ 32632855 (+)
rhbg2a rhbg2a coding downstream 105590 32673648 ~ 32684724 (+)
G133185 NA non-coding upstream 4916 32545778 ~ 32545991 (+)
G133163 NA non-coding upstream 29812 32520810 ~ 32521095 (+)
G133157 NA non-coding upstream 35700 32515008 ~ 32515207 (+)
G133154 NA non-coding upstream 38512 32511825 ~ 32512395 (+)
G133125 NA non-coding upstream 58732 32489653 ~ 32492175 (+)
G133324 NA non-coding downstream 276193 32844251 ~ 32844534 (+)
G133374 NA non-coding downstream 413124 32981182 ~ 32982028 (+)
LOC110487479 LOC106605309 non-coding downstream 427562 32988834 ~ 33002008 (+)
G133272 NA non-coding downstream 443004 33011062 ~ 33012909 (+)
G132342 LOC100136303 other upstream 663335 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 1184585 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 1257873 31262054 ~ 31294577 (+)
G131517 ccne2 other upstream 1800953 30748055 ~ 30749954 (+)
G131491 NA other upstream 1850284 30700182 ~ 30700623 (+)
G133473 LOC106605294 other downstream 599380 33167438 ~ 33169378 (+)
G133663 LOC106605282 other downstream 928396 33496454 ~ 33497285 (+)
G133760 LOC106605274 other downstream 1245975 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 1394359 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 2119897 34687955 ~ 34692286 (+)

Expression


Co-expression Network