tlr18 (LOC106580799)


Basic Information

Item Value
gene id tlr18
gene name LOC106580799
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32569440 ~ 32582549 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559175.2
tcagcttCAGTAGGCTCCTGAACAAGTCAAGCACTGCCTGCAGGAAAGGGAATGGCTTTATCCCCCACATTCCACATTCCTGAGCGCTTACATACAGAGCAATGTGGAAAATAAGACTTAAAGGGCTGGTCTTCTTCCTTCACGGTCAGTCACTGACAACACATGTTAATGTGTTGTTGAAAACTGGTAACTGAAGGGCTGAATTGGTTCACTAATATTTCATCTTAAGATCCAAAATGTACATACACACGATGATTCTACTGGGTTTTGTGTGGTTTAGTCCACCACTTCTTGTGATCCTTGCCTCACCAACCCCTGCTTCGAATGATAAGAGAGGCCCCTGTCAAATCTACAACTCTGGTCGCTCCGCAAACTGCCTTGGTCAGCGACTGGATCATGTTCCATGGAAGCACCTCCCTTCCACGCTTGAAAGGATAGATCTCTCCTACAATGAACTTCATACCATTCATGTTAATTACTTTTCTCGCCTACCTCATCTTCGTGTCCTCGAGCTGCAGTTCAACAACATCTCTGTGATTGAGGACCGTGCCTTCCACAACAACCCCCTCCTGGAGCATCTTAACATCTTTAACAACTCCCTAGAGGAAATCCCTGCCAACGCCTTGCAGGACCTCTTTAATCTAAGGGAACTCCTTATGTCGAATAACCTTTACACCCAGGCTACATTGTCAGCTGATGTTTTCTCCAGATTGACCCACCTTAAGGCCCTGTCCATGGGCGGCCCCTTGGTCAAGGGTCTAAGGAAAGGGGACTTCCAGGCATTGAGGAACATTCAGTTGCAGGACTTTGCCATTAAAACTTCATCAAATATCAGTTACTATGAACCGGGTAGTCTGAAGGTAATCCAGACAGGTAGAATGGGTTTTGACATGGCCATAGATCAGAAGCCGAATTTCCTACCTTTGATTCTACGAGACTTGGCCAACAAGACTTTCAGTCTCATCCAATTCAGGAACCTCTTTGAGTTCATGTATTACTTGGGAGATGAGGATATTTTCAGAGGCTTGCAAGACATCAAAGTAGATTCGCTCATCTTTCACCGTGGAAAATTCAATGAGAACCTTATGAGGATGGCTCTGTTTAATCTACAGATCACCCCCCTTAAACGTCTGACACTTCAATACATTGACTTTGCTCGCTCGCCCAACTTTGTGGATAATGGCTTGGACTCCAGTATCAAATATCTTGCTCTGAGTAGACTAAATCTGTGGCACATCAGCAATCCAGATATTTTGCGATTCGACTGGCGCTTCACATGGTTCAACAAAGTCAGACTGCTGTCCATTCAGAATGTCAACTTCAAATCTGTGCCTTGCGATGCCTGGCTTAATATGGAAGGCATGGAGGTTTTGGACATCTCAAACAACCGCCTGCAGGACAACATCCTCTTCAACCAGAGATGCGACTACAGGGGCACCATGCCAGCTCTTCGTTCCTTCAATGTCAGCACCAACCAACTGACCAGCCTTCAGGACTTAGCCTCCCTGACCAGGGAGTTCAAACAGTTGAAGGTCCTGGATGTCAGCTACAACATGTTGGGTTCTGCTGAGAAGAGTCGCAACTGTAACTGGATGCAGAACATCACCCAGGTGATCGCTCACCACAACCGATTCGAAAGTGGTGCCCTCCAGTGTCTGCCCACCACAGTACAATTCCTGGACCTCTCGTACTGTGACCTGGACCAGCTGGACATGGCCTACTTCCAACAAACCATCAGCCTCAAGGAGCTCCTGCTCAATGGGAACAAGATCAAGTTCATCCCCTCTGGGTGGAGAAGTCGCTCCTTGCAGTCACTGGCTCTGGATGGGAACTCCTTTGGGCTCATCAGCATGGGCTCCTTCCAGGACATGACCCAGCTTTCTCGACTGACAGCAGGGAACAACCCATTCCACTGCACATGCGACCTCCACGCCTTCATCCAGGACACCATTTCCAAGGGGAAAGTCACCATCACTGACTGGCCAGAGAACTACAAGTGTTACCATCCAGAGGCCCTGCTCAATACCGCTGTGGCAAATTTCTTCCCGGGTCACGTGGCCTGCGATATCAGACTGGTCATCATCATCTGTGtggctactactgctgctgtggtTTTAGTGTTGATGCTTATATGCTACATATTCAATGTTCCCTGGTACATTAAAGCCACATATCAGATCCTCAGAGCCAAATACAGGGCTCATCAGGAAGGAACATCTGGAAAATCACAAATCTATGCTTACCATGCATTCATCTCCTATAGCCAACCAGatgcagactgggtcagggaccaGTTGTTGCCCTGCTTGGAGAACAGCAAGCCCCCCTACCGACTCTGTATCCATGAGAGAGACTTCATGCCAGGAAAATGGATAATCGACAACATCATTGAAAATATTGAGAGCAGCGAAAAGGTCATATTTGTGTTGTCACACCACTTTGTGAACAGCGATTGGTGCAACTACGAGCTCTACTTTGCCCAGCAAAGAGCCATCGGCAAGAGCTTCAGCGATGTTATTCTGGTGGTTAAAGAACCCATCGACCCTGAATCTCTGCCCAGCAAGTATTGTAAGCTCAAGAAGATGCTGAACACCAAAACATACCTAGAGTGGCCCCAGCAAGCCAAGCAGCAGACCTTCTTCTGGGCTCAACTTAGGAGCTGCCTGGGCAAGCCCACAGTGACTAGAGAGCAGGCTCTTAGTGGTAGGAGCAGCAGTGTATCCTCAGTTGGCGCTGTGCCTGTGATAGAGATTCCTCTAGAGGATGAGAAGCCAGCGATAGCTATGCCAAATTTAGACAGAGAAGCAGAGCTCCACAAAGTAGTTCCTCGGGAGATCAAAAATCTTTCAGTGAGAAGTGCAGAGTTTTGTGGGCAAAGACTGATCCCTGTAGCCGTGGCATGAGACAAAATAAGCCAAGCATGTAGCTTGTAATGTGCAAAGTGTCCCAAGACCAATCTCTCTCTGAAGTGCTGAGCTTGAGTGACTTCTTGGCCATGCTGTGGCAGATAATGTGTTTTCCAAGCTGCTTGTAGCATTAGCAAGTGTTTCATAATGATGACAGTGAATAACACGATCCGTCTGCCACCCACCCTTCTGACATGTACAGTGCTTACTCCCCCTTGAACTCTTTACATTTTGTTGCGATACAAAGCGGGATTGAAAtagatttaattgtaatttttttgtcattgATCTTCACAAAATACTccacaatgtcaaagtgaaaaaaaGTTatacaaatgtttacaaatgaacaCAATTTAAATAACTAAAATATGGTCGTTGCATTTAGTTCAGAAGTAAAAATAATCTTAACAAATCTCATAATAAGTTATATGGACTCACTTTctgtgaaataataggggttgatgtgatttctgaatgactaccctttcctctgtctcccacacacacacacacacacacacacacacgcacacacacacgcacacaacatctgtaa

Function

NR:

description
toll-like receptor 2 type-2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559175.2 True 3465 mRNA 0.46 4 32569440 32582549

Neighbor

gene id symbol gene type direction distance location
si:ch211-113g11.6 LOC106605326 coding upstream 1382 32550907 ~ 32568058 (+)
lingo4b LOC106605327 coding upstream 25703 32525732 ~ 32543737 (+)
onecutl LOC106605329 coding upstream 79996 32477650 ~ 32489444 (+)
hormad1 hormad1 coding upstream 114194 32442246 ~ 32455246 (+)
scnm1 scnm1 coding upstream 195567 32370802 ~ 32373873 (+)
LOC110487342 LOC106605324 coding downstream 6640 32589189 ~ 32592242 (+)
isg20l2 isg20l2 coding downstream 14552 32597101 ~ 32605620 (+)
LOC110534753 LOC106605320 coding downstream 25713 32608262 ~ 32632855 (+)
rhbg2a rhbg2a coding downstream 91099 32673648 ~ 32684724 (+)
LOC110487398 LOC106605316 coding downstream 193051 32775600 ~ 32852143 (+)
G133185 NA non-coding upstream 23449 32545778 ~ 32545991 (+)
G133163 NA non-coding upstream 48345 32520810 ~ 32521095 (+)
G133157 NA non-coding upstream 54233 32515008 ~ 32515207 (+)
G133154 NA non-coding upstream 57045 32511825 ~ 32512395 (+)
G133125 NA non-coding upstream 77265 32489653 ~ 32492175 (+)
G133324 NA non-coding downstream 261702 32844251 ~ 32844534 (+)
G133374 NA non-coding downstream 398633 32981182 ~ 32982028 (+)
LOC110487479 LOC106605309 non-coding downstream 413071 32988834 ~ 33002008 (+)
G133272 NA non-coding downstream 428513 33011062 ~ 33012909 (+)
G132342 LOC100136303 other upstream 681868 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 1203118 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 1276406 31262054 ~ 31294577 (+)
G131517 ccne2 other upstream 1819486 30748055 ~ 30749954 (+)
G131491 NA other upstream 1868817 30700182 ~ 30700623 (+)
G133473 LOC106605294 other downstream 584889 33167438 ~ 33169378 (+)
G133663 LOC106605282 other downstream 913905 33496454 ~ 33497285 (+)
G133760 LOC106605274 other downstream 1231484 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 1379868 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 2105406 34687955 ~ 34692286 (+)

Expression


Co-expression Network