LOC110487342 (LOC106605324)


Basic Information

Item Value
gene id LOC110487342
gene name LOC106605324
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32589189 ~ 32592242 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559274.2
GTTTCACCGATGGGAGGCGCCTGATTTTAATTTTCTCAGAGGTGAGATGCATAAAACAGGTAAGATGAGGATCGACGCCACTTCTGCTTCGTTTGTCATCGGCGTTGAGGTATCCACAGTGCTGTAAAATGGGTTCCAAACTCGAGAGTGCAATGGAGGGGCTAATTCGAGTGTTCCACTCATACTCCTCAAAAGAAGGGGACAAGTACAAGCTGAGCAAAGTTGAGCTGAAGAATCTGTTACAGGGCGAACTGAGTGACTTCCTGGCGGCAAGTAAGGACCCTATGGTAGTAGAGAAGATCATGAGTGATCTGGATGAAAACAAAGATGGCGAAGTGGACTTTCAGGAGTTTGTCATCTTGGTTGCTGCGCTGACCGTGGCCTGTAACGAGTTCTTTGTCGAGAGCCTGAATGAATGAGTTTGGAAACAGTCTGTGACCTCGGCTTTCTACTCATTATTCCTTGTTAATAAAACATGTAtgctttaatttttttaaatactttttgacAGAAACCAGCAAAGGTTTCAATATTGTCACATAATGGTTATTTTTAACAAAGGCTCTTTTGACTGTTGTAAAATGATTGCCGCTGTAGAGAATCCTGCAATGGACTGACCACTTTCAGTGTACTATCACTCTCATTGCACTAGTAGTTAACATTCTGCTCAGCTCAATAAAGGTGATTGCTGTCTAAATATGTTAAACTCAGCTCATCGTAAACTTGAATGCACAATACCGGTACATGTCTTTTGCATGCGGAATATGGGGCAGTATGAATACATTCtcaggagtgctgatttaggatcagttatgccttttagatcacaatgactaagattacatggacagtaGAGGcctgatcctagaacagcactTGTACTGAGACTCTTCATCTGGCCCCTAGTCTGCTACCTATGCTTAAACATGGCAAACTGCACCCAACATTATAGTGAAGGATTTCCACTGAAATACCTAACTCCTTCTGTTTGGCTAAAAACAAACGGTTCTAAACCAATTTCCAAGTTCCCACACAGCAGACTGGTGAAACTGATTAGAATGCAGCCAGCCAATCTTAATTACATGCAAGGCTTGCTATAAATCTAACTTGTGTGTGACGATGCGTTGGCAGCAACAGAACACTGCAGTCTGACAACTTAATACTGGCGTCTGAGGCCTAAGTCAGGATGCTTCAGTCATGTGTTAAACACGCCCTGTAACAAACTGTCACGTGGTGCAGACTGTAAAATTCAAACAATTTTTTTG

Function

NR:

description
PREDICTED: protein S100-A1

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23758 S100A1; protein S100-A1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559274.2 True 1265 mRNA 0.42 3 32589189 32592242

Neighbor

gene id symbol gene type direction distance location
tlr18 LOC106580799 coding upstream 6640 32569440 ~ 32582549 (+)
si:ch211-113g11.6 LOC106605326 coding upstream 21131 32550907 ~ 32568058 (+)
lingo4b LOC106605327 coding upstream 45452 32525732 ~ 32543737 (+)
onecutl LOC106605329 coding upstream 99745 32477650 ~ 32489444 (+)
hormad1 hormad1 coding upstream 133943 32442246 ~ 32455246 (+)
isg20l2 isg20l2 coding downstream 4859 32597101 ~ 32605620 (+)
LOC110534753 LOC106605320 coding downstream 16020 32608262 ~ 32632855 (+)
rhbg2a rhbg2a coding downstream 81406 32673648 ~ 32684724 (+)
LOC110487398 LOC106605316 coding downstream 183358 32775600 ~ 32852143 (+)
LOC110487428 NA coding downstream 280946 32873188 ~ 32875850 (+)
G133185 NA non-coding upstream 43198 32545778 ~ 32545991 (+)
G133163 NA non-coding upstream 68094 32520810 ~ 32521095 (+)
G133157 NA non-coding upstream 73982 32515008 ~ 32515207 (+)
G133154 NA non-coding upstream 76794 32511825 ~ 32512395 (+)
G133125 NA non-coding upstream 97014 32489653 ~ 32492175 (+)
G133324 NA non-coding downstream 252009 32844251 ~ 32844534 (+)
G133374 NA non-coding downstream 388940 32981182 ~ 32982028 (+)
LOC110487479 LOC106605309 non-coding downstream 403378 32988834 ~ 33002008 (+)
G133272 NA non-coding downstream 418820 33011062 ~ 33012909 (+)
G132342 LOC100136303 other upstream 701617 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 1222867 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 1296155 31262054 ~ 31294577 (+)
G131517 ccne2 other upstream 1839235 30748055 ~ 30749954 (+)
G131491 NA other upstream 1888566 30700182 ~ 30700623 (+)
G133473 LOC106605294 other downstream 575196 33167438 ~ 33169378 (+)
G133663 LOC106605282 other downstream 904212 33496454 ~ 33497285 (+)
G133760 LOC106605274 other downstream 1221791 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 1370175 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 2095713 34687955 ~ 34692286 (+)

Expression


Co-expression Network