rrnad1 (cl026)


Basic Information

Item Value
gene id rrnad1
gene name cl026
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32592663 ~ 32597152 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559212.2
GACATCCTTAACAGCCAAACAATCGACTACTTCCGGTTCAGAGGTCGTGTTGTGAGGAAGAGCTACAAACAAACACTTCTTATCGTCGTTATATAAAACTCTTTCACTCGGTTGTAATAGTGTATTGTTGAAATGTTTAATGTTCACAATTTATAACCGGTCAGTTGCCGATTTGACGGTCGAATGATGTGCTCACCGACACTTTCAGCAGAGCAGCAAAGAGAGTTGGCAAGAAATCTTACATATTTTCTGTCGACATACAAACACATCTCCGATTCCTTCATAATTGAATTCTTCAGTGAGGATCTATGGGCTACATTGCCTACCAGATGGCAACAGATCCTCTGTGACCTGTCACCCCCACAAATAGCTGACCTCCTATTGGACAGATTGAATGTGAATAGAAGCTACTCTTGTGTATGGCCTCTTTCACTATTGGCTTTCCGGGCCACCGCGCATGCTCTGACGTTCCCCAGGACACCCCAAGGCAAGCGGAGACATGAAGTGGGCATGCTGAAGCCAGAGGAGTTCTTGGAGAACAAGAGTCAGAGCTCACTGCTGGGACACATATTTAGGAAACATGTGAAACCCAAGAAGCAGCATGAGATCCGGAGTCTGGGAACGTTGGTGAAGCAGCTTTGTGACCTGACAGACTGCAATAGTGTGGTGGATGTGGGTTCTGGACAGGGCCATTTGACTCGTTTCTTGTCTTTTGGGCTTGGTCTGTCTGTGACTGGAATTGAGGCTGATCCCACTCTAGTTTCCATGGCATCCAAATATGATGGACAGCTTCTGTGGACGCTGGAGAAGGAGCGGCAGAGGAAGAATGGACCTCCAATCTCTAGATCTGGCCCCTCACCCTGCCATGTGGCTGGCTGGGTCAACCCCAAAGCATCATGGAAAGACTTCGTCAAGCAGGTAGGAAATGGTAAATGTGTCTGTGAGGATCGGACCGCTCCGGCTGGATCCAGTAAGAAGAGACAGCGGGAGTCCATGTCAGAAGCTGATCAGCAACATGGTCACGGAGACCAGCCTGTGTTGACTGCAGAATCAGAATTCCTGGGTTGTTCAGACAATGGCCAGGCTGCATCCCCACTCAAGAATAATGACAATACATGTACAAACTCTTTTACTAGTGTAAAACATGAACCCCGGTCTAGCTCACTCTTGTTTCCAAAACGTCTCTGCAAGATTGAAGCCGGGCAAGGCCCATATGTCCACCCACTCTGCCAAGAGAGTTCATCCACAGAAGTTGTTGTCTGCCCTGTAGAAGAGGGGCAGGAATGTCCAGATTTTATCCTAACGGGCCTCCATGCCTGCGGGGACCTCAGTGCCACCCTCCTTCGCCACTTTGTCAGCTGCCCTCACGTTCGTGGCATCACCTCCGTGGCTTGCTGCTACATGAAGATCACCACCAGTGAGAACCCCAACCCCCCTGGCCTCATAGCCCCTCCCCTATCCCCTTTGCCCACCAGTGAGGCTTCTCACTCAGAGTTTGGCTACCCAATGAGCTCCTGGGTGCAGGGGTTGCCGGGACACCAGCTGTCCTATAAGGCACGGGAGGGGGCGTGTCACGCCATAGAGGACTACATGCACAGGCTGCGGGAGGAGAGTGGGTTGCTAAGGATGCACTGTTATCGGGCAACCCTAGAGACAGTTATCAGGGAGGCGAAGCCAGAGCTGCGCAGGCCGGGAGTCCAGGCAATAAAGAAAGCACATCTACTACCCTTTACAGAGTATGCCCGTCTGGGTCTGCCCCGCGTTGGCCTGCCCCCTGACCTGCCCCTGGACACCTGCAGAGTGGGGGCCATGCTGAGGCAGGAGGGTCGTGTGGTGGTCTACTTCAGCCTGGCTCTGCTACTGGCACCGGTGGTGGAGACACTGGTGCTGCTGGACAGGATGCTATACCTGCAGGAGAAAGGTATAAAGAGTCAGCTGGTGCCACTCTTTGACCCTGCGTTCTCTCCCCGAAACCTGGTACTGATGGCTTTGAAGCAGCCGACAAGGGACAAAGAGACTGAGTGCACCCTTCCGTAACCAAGGACACCTCTAGAACCGTGTGTTGTGTTCAGAGTTTACACCCTTACTCATTGGTGCTCAAGGACTTGAGTGTAAGTTTAGAAGTGAGTAGCTGTCTGAATATCCATACTAGCGTACTAcatacttcaactgtatactctGTACTCATTGTCACAAACTATTTTGCACGTACTGTCTGAATAGAATAGTAATGGAGTTATAGTTGTcttgatgtcctttgggttgtGAACCATTCTTGGTACACATGGGAAACGtgtggaaaacccagcagcgttgcagttcttgacacaaacctgtgcacttggcacctactaccataccctgttcaaaggcacttaaatctggTTTTCGTTTCATTAACATATTTAGTCAAACCCAAGTGCATATATAAATGAAATCAAATACCCTAGTACACACACAAACTTTTCAAATGTTCAAATCGACAAAAAAAACGTTGTCGGGTGCATCGCAAATTCAAAACTGCTGGATAGCAACATAAAACTAAAGCACTGATAATTGGGAATGACAGAACACTTTAATGAGAACAGAAATCCACTTtgggttaaaaaaataataattcaaaaGATGTAGCCTATGACGCTACACTCATGATCACTTTAAAGAGAACAAAAAACTACTTGGCCAACATTACATTTGAACACCACTGCAGAAGCGTTGCTATTCAGCATCTTCCTAATTAAGTTGTTTAATTTTGTTAGGCCCTAGTTCTAAGTAGCCAATCACTCGCAGCCCCCCTCTTCcaatgcattgtgggaaaatgtgcattgaattctactagatgagcTGAATGAGTAACATTTAAACCATACTTGATATTTGAAAATTGTATACTATAAAACTTAGTTTTCCCATACTGAGAATGCATCATGCAAAATGCATTGTTTCATGTTATTGGTTAATTTTGGTAGCACATCCCCATATCTAGTTGTCAAAGCTGAAATAAGGATATCTGGCTATTTAAAGTATACTTGATTTTCATGTTGCATACTATAAAACCTTTTTTTGCATAATCAAAATATTTAGGATGCAAGTATGGGTATTCAGACATGGCCAGAGTCAAATTACTATTTCATCACAGAATGTGGAAAGAAGTGAAGGGCACGCAACCATACACAATGCAATTGCTTTTTCATATTCATGTCTGGACAAACTTGCTTTAATGGAATGTGCCCCTTTTTCAAATTGTGTAAATGAATAAAGACTAGTATTTAAACTTCA
>XM_021559218.2
CGACATCCTTAACAGCCAAACAATCGACTACTTCCGGTTCAGAGGTCGTGTTGTGAGGAAGAGCTACAAACAAACACTTCTTATCGTCGTTATATAAAACTCTTTCACTCGGTTGTAATAGTGTATTGTTGAAATGTTTAATGTTCACAATTTATAACCGGTCAGTTGCCGATTTGACGGTCGAATGATGTGCTCACCGACACTTTCAGCAGAGCAGCAAAGAGAGTTGGCAAGAAATCTTACATATTTTCTGTCGACATACAAACACATCTCCGATTCCTTCATAATTGAATTCTTCAGTGAGGATCTATGGGCTACATTGCCTACCAGATGGCAACAGATCCTCTGTGACCTGTCACCCCCACAAATAGCTGACCTCCTATTGGACAGATTGAATGTGAATAGAAGCTACTCTTGTGTATGGCCTCTTTCACTATTGGCTTTCCGGGCCACCGCGCATGCTCTGACGTTCCCCAGGACACCCCAAGGCAAGCGGAGACATGAAGTGGGCATGCTGAAGCCAGAGGAGTTCTTGGAGAACAAGAGTCAGAGCTCACTGCTGGGACACATATTTAGGAAACATGTGAAACCCAAGAAGCAGCATGAGATCCGGAGTCTGGGAACGTTGGTGAAGCAGCTTTGTGACCTGACAGACTGCAATAGTGTGGTGGATGTGGGTTCTGGACAGGGCCATTTGACTCGTTTCTTGTCTTTTGGGCTTGGTCTGTCTGTGACTGGAATTGAGGCTGATCCCACTCTAGTTTCCATGGCATCCAAATATGATGGACAGCTTCTGTGGACGCTGGAGAAGGAGCGGCAGAGGAAGAATGGACCTCCAATCTCTAGATCTGGCCCCTCACCCTGCCATGTGGCTGGCTGGGTCAACCCCAAAGCATCATGGAAAGACTTCGTCAAGCAGATTGAAGCCGGGCAAGGCCCATATGTCCACCCACTCTGCCAAGAGAGTTCATCCACAGAAGTTGTTGTCTGCCCTGTAGAAGAGGGGCAGGAATGTCCAGATTTTATCCTAACGGGCCTCCATGCCTGCGGGGACCTCAGTGCCACCCTCCTTCGCCACTTTGTCAGCTGCCCTCACGTTCGTGGCATCACCTCCGTGGCTTGCTGCTACATGAAGATCACCACCAGTGAGAACCCCAACCCCCCTGGCCTCATAGCCCCTCCCCTATCCCCTTTGCCCACCAGTGAGGCTTCTCACTCAGAGTTTGGCTACCCAATGAGCTCCTGGGTGCAGGGGTTGCCGGGACACCAGCTGTCCTATAAGGCACGGGAGGGGGCGTGTCACGCCATAGAGGACTACATGCACAGGCTGCGGGAGGAGAGTGGGTTGCTAAGGATGCACTGTTATCGGGCAACCCTAGAGACAGTTATCAGGGAGGCGAAGCCAGAGCTGCGCAGGCCGGGAGTCCAGGCAATAAAGAAAGCACATCTACTACCCTTTACAGAGTATGCCCGTCTGGGTCTGCCCCGCGTTGGCCTGCCCCCTGACCTGCCCCTGGACACCTGCAGAGTGGGGGCCATGCTGAGGCAGGAGGGTCGTGTGGTGGTCTACTTCAGCCTGGCTCTGCTACTGGCACCGGTGGTGGAGACACTGGTGCTGCTGGACAGGATGCTATACCTGCAGGAGAAAGGTATAAAGAGTCAGCTGGTGCCACTCTTTGACCCTGCGTTCTCTCCCCGAAACCTGGTACTGATGGCTTTGAAGCAGCCGACAAGGGACAAAGAGACTGAGTGCACCCTTCCGTAACCAAGGACACCTCTAGAACCGTGTGTTGTGTTCAGAGTTTACACCCTTACTCATTGGTGCTCAAGGACTTGAGTGTAAGTTTAGAAGTGAGTAGCTGTCTGAATATCCATACTAGCGTACTAcatacttcaactgtatactctGTACTCATTGTCACAAACTATTTTGCACGTACTGTCTGAATAGAATAGTAATGGAGTTATAGTTGTcttgatgtcctttgggttgtGAACCATTCTTGGTACACATGGGAAACGtgtggaaaacccagcagcgttgcagttcttgacacaaacctgtgcacttggcacctactaccataccctgttcaaaggcacttaaatctggTTTTCGTTTCATTAACATATTTAGTCAAACCCAAGTGCATATATAAATGAAATCAAATACCCTAGTACACACACAAACTTTTCAAATGTTCAAATCGACAAAAAAAACGTTGTCGGGTGCATCGCAAATTCAAAACTGCTGGATAGCAACATAAAACTAAAGCACTGATAATTGGGAATGACAGAACACTTTAATGAGAACAGAAATCCACTTtgggttaaaaaaataataattcaaaaGATGTAGCCTATGACGCTACACTCATGATCACTTTAAAGAGAACAAAAAACTACTTGGCCAACATTACATTTGAACACCACTGCAGAAGCGTTGCTATTCAGCATCTTCCTAATTAAGTTGTTTAATTTTGTTAGGCCCTAGTTCTAAGTAGCCAATCACTCGCAGCCCCCCTCTTCcaatgcattgtgggaaaatgtgcattgaattctactagatgagcTGAATGAGTAACATTTAAACCATACTTGATATTTGAAAATTGTATACTATAAAACTTAGTTTTCCCATACTGAGAATGCATCATGCAAAATGCATTGTTTCATGTTATTGGTTAATTTTGGTAGCACATCCCCATATCTAGTTGTCAAAGCTGAAATAAGGATATCTGGCTATTTAAAGTATACTTGATTTTCATGTTGCATACTATAAAACCTTTTTTTGCATAATCAAAATATTTAGGATGCAAGTATGGGTATTCAGACATGGCCAGAGTCAAATTACTATTTCATCACAGAATGTGGAAAGAAGTGAAGGGCACGCAACCATACACAATGCAATTGCTTTTTCATATTCATGTCTGGACAAACTTGCTTTAATGGAATGTGCCCCTTTTTCAAATTGTGTAAATGAATAAAGACTAGTATTTAAACTTCA

Function

NR:

description
protein RRNAD1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559212.2 False 3279 mRNA 0.46 8 32592663 32597151
XM_021559218.2 True 3007 mRNA 0.46 9 32592663 32597152

Neighbor

gene id symbol gene type direction distance location
ctsk catk coding downstream 86806 32498803 ~ 32505857 (-)
LOC110487241 LOC106605328 coding downstream 94669 32489604 ~ 32497994 (-)
ensab ensa coding downstream 150664 32430455 ~ 32441999 (-)
LOC110487180 mcl-1 coding downstream 162681 32427587 ~ 32429982 (-)
LOC110487143 tmod4 coding downstream 204781 32374622 ~ 32387882 (-)
LOC110487305 LOC106605321 coding upstream 35827 32632979 ~ 32640545 (-)
LOC110514821 NA coding upstream 143601 32738829 ~ 32756992 (-)
LOC110487362 NA coding upstream 173258 32770410 ~ 32775521 (-)
LOC110487370 nes coding upstream 258613 32855765 ~ 32868211 (-)
LOC110487437 LOC105030512 coding upstream 287256 32853454 ~ 32889385 (-)
G133992 NA non-coding downstream 44956 32547489 ~ 32547707 (-)
G133990 NA non-coding downstream 46660 32545775 ~ 32546003 (-)
G133962 LOC100380853 non-coding downstream 82123 32510155 ~ 32510540 (-)
G133960 LOC106562530 non-coding downstream 83290 32509131 ~ 32509373 (-)
G133118 NA non-coding downstream 133286 32459146 ~ 32459377 (-)
G134027 NA non-coding upstream 85458 32682610 ~ 32684723 (-)
G134161 NA non-coding upstream 250510 32847662 ~ 32848177 (-)
G134160 LOC106605316 non-coding upstream 251301 32848453 ~ 32852110 (-)
LOC110486999 prdm1 other downstream 943868 31631886 ~ 31648795 (-)
G132197 NA other downstream 1049654 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 1393851 31196917 ~ 31199241 (-)
LOC110486852 LOC106605360 other downstream 1396371 31192419 ~ 31196292 (-)
trnae-cuc LOC106605367 other downstream 1693099 30897026 ~ 30899564 (-)
G134102 NA other upstream 151056 32748208 ~ 32788121 (-)
LOC110487618 LOC100380645 other upstream 615512 33208500 ~ 33225125 (-)
G134668 NA other upstream 1268336 33865488 ~ 33865937 (-)
G135575 NA other upstream 2007063 34604215 ~ 34604478 (-)

Expression


Co-expression Network