LOC110487305 (LOC106605321)


Basic Information

Item Value
gene id LOC110487305
gene name LOC106605321
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32632979 ~ 32640545 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559238.2
gagagagagagagagacccccacacacacaccttgaaggtcaaagggaggagggagaaattgCAGTGGCAGAAAGGGTCTCAGAGAAACCAACGGTCATGTTTGGCTGAACAACCCTCAAAGGTGATCAGTCACCACTGTTTTGAAGAGAAAAATCAATCCTCATCTCATCAACTGCTGCAGggagagggagggtgactTGCTTCATTATGAACTGTGCTGCTATTTTGATACTAACCACAAGTTGTTTCAGTTGGACGTCTGCTATTTATCTCCCAAACAGACAAGCAACAAAGAAATTGAAGTATCTGCTTGAGCCACCTGTTTATGCCGAAGTAACCGGCCCTCGGGGAGGAAATGCCACTTTGCCATGTGTACTGCGATTCAAACCAAGCCATTACAAGGTGAAATGGACAAAACTGGAACCACTTCGTCATGGAAACGAGAACATTGTCATGATCACAAACGGTTCAGCCCACAAACCCTATGGCCTGCTTGGGCCACGGGCCTCGCTTCGTAAGGCTCATGCCATGGATGCCTCACTACGACTCAGCAACCTGGAACTAGAAGACGGTGGTAGATATCGCTGTGAGCTGATCAACGGTATCGAGGATGAGAGTGTCATCATTACATTGGGGATAGAAGGGATGGTGTTtccatatcagagcaaaaacggCCGCTACAAATTCACCTACCAGGAAGCTAAGGAGGCCTGTGTTGAACAGGATGGCACATTGGCCACATTCAAGCAGCTATACAGAGCCTGGACAGAGGGTCTGGATTGGTGCAACGCAGGATGGCTCATCGATGGGACAGTCCACTACCCCATCCTGCACCCACGAGCAGAATGTGGGGGGGAGCTGCTGCCTGGAATTCGCAGCTATGGCCCCCGGGACAGGATCCGGAACCACTTTGATGCCTTCTGTTTCACCTCTAGAACCACAGgCTTTGTGTTCTTTGTTGGAGGGCCACTCACGTTTGGGGAGGCAGTGGAGGCGTgcaggggtgagggaggagagttAGCTCTGGTTGGACAGCTCTATTCAGCCTGGCGTTTCCTGAGCTATGACCGCTGTAATGGAGGTTGGTTGAAGGACGGCAGTGTGCGTTTCCCTATCACCACCCCTAGAGAGCGCTGTGGCGGTATTCCCGAGGCTGGGGTGCGCACCTTTGGGTACCCCAGCAAGACCCTGCGTCTCTATGGTGCCTACTGCTACAGGTAGCTTTCATGGGACCCATAGCGTGTGGAACCTACATCCACTGACTTCATAGATCCAAGACGCAGCCATTGTGAAGACTACCAGTGACCCCTACAGGTTTCATTACACTTTTCTGCAATACTACAATATGTTATTACAGGAAACCTCAAAGgtttaacacctttttttcaTGGGACACATCAATAAAAGCCTGCCACTTTTTTGAGCTTTACTGCTACAGGTAACAACTGCTGTACATGTTTCCCTGCGTTTGTGTAACATGCTTTTTGTGATCTTTGTTATCCAAGAAGCACTATTCTAATGTAACAGGAAAGTTATTACACAATGACAAATTCCTAAAATGCTGTTAGCTTCTTATCTGATGT
>XM_036945880.1
GCCCTTTAAGGCTCaaaattaactagctagctaatttagctggTCAATATTTGCCCATGTggggaagttaggctagcaagcatgttagctaggtagcctaggacaacgaAAACTAAAAGCTTACTTACTGTATGACCGAGCCATGGACCGTTTTGCCAACataaaagagaggaggatgacattGGCGTGCAActagtctacaagtaggggagagggagggtgactTGCTTCATTATGAACTGTGCTGCTATTTTGATACTAACCACAAGTTGTTTCAGTTGGACGTCTGCTATTTATCTCCCAAACAGACAAGCAACAAAGAAATTGAAGTATCTGCTTGAGCCACCTGTTTATGCCGAAGTAACCGGCCCTCGGGGAGGAAATGCCACTTTGCCATGTGTACTGCGATTCAAACCAAGCCATTACAAGGTGAAATGGACAAAACTGGAACCACTTCGTCATGGAAACGAGAACATTGTCATGATCACAAACGGTTCAGCCCACAAACCCTATGGCCTGCTTGGGCCACGGGCCTCGCTTCGTAAGGCTCATGCCATGGATGCCTCACTACGACTCAGCAACCTGGAACTAGAAGACGGTGGTAGATATCGCTGTGAGCTGATCAACGGTATCGAGGATGAGAGTGTCATCATTACATTGGGGATAGAAGGGATGGTGTTtccatatcagagcaaaaacggCCGCTACAAATTCACCTACCAGGAAGCTAAGGAGGCCTGTGTTGAACAGGATGGCACATTGGCCACATTCAAGCAGCTATACAGAGCCTGGACAGAGGGTCTGGATTGGTGCAACGCAGGATGGCTCATCGATGGGACAGTCCACTACCCCATCCTGCACCCACGAGCAGAATGTGGGGGGGAGCTGCTGCCTGGAATTCGCAGCTATGGCCCCCGGGACAGGATCCGGAACCACTTTGATGCCTTCTGTTTCACCTCTAGAACCACAGgCTTTGTGTTCTTTGTTGGAGGGCCACTCACGTTTGGGGAGGCAGTGGAGGCGTgcaggggtgagggaggagagttAGCTCTGGTTGGACAGCTCTATTCAGCCTGGCGTTTCCTGAGCTATGACCGCTGTAATGGAGGTTGGTTGAAGGACGGCAGTGTGCGTTTCCCTATCACCACCCCTAGAGAGCGCTGTGGCGGTATTCCCGAGGCTGGGGTGCGCACCTTTGGGTACCCCAGCAAGACCCTGCGTCTCTATGGTGCCTACTGCTACAGGTAGCTTTCATGGGACCCATAGCGTGTGGAACCTACATCCACTGACTTCATAGATCCAAGACGCAGCCATTGTGAAGACTACCAGTGACCCCTACAGGTTTCATTACACTTTTCTGCAATACTACAATATGTTATTACAGGAAACCTCAAAGgtttaacacctttttttcaTGGGACACATCAATAAAAGCCTGCCACTTTTTTGAGCTTTACTGCTACAGGTAACAACTGCTGTACATGTTTCCCTGCGTTTGTGTAACATGCTTTTTGTGATCTTTGTTATCCAAGAAGCACTATTCTAATGTAACAGGAAAGTTATTACACAATGACAAATTCCTAAAATGCTGTTAGCTTCTTATCTGATGT

Function

NR:

description
hyaluronan and proteoglycan link protein 2-like isoform X2

GO: NA

KEGG:

id description
K06851 HAPLN2; hyaluronan and proteoglycan link protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559238.2 False 1584 mRNA 0.49 6 32632979 32636515
XM_036945880.1 True 1610 mRNA 0.48 6 32632979 32640545

Neighbor

gene id symbol gene type direction distance location
rrnad1 cl026 coding downstream 35827 32592663 ~ 32597152 (-)
ctsk catk coding downstream 127122 32498803 ~ 32505857 (-)
LOC110487241 LOC106605328 coding downstream 134985 32489604 ~ 32497994 (-)
ensab ensa coding downstream 190980 32430455 ~ 32441999 (-)
LOC110487180 mcl-1 coding downstream 202997 32427587 ~ 32429982 (-)
LOC110514821 NA coding upstream 100208 32738829 ~ 32756992 (-)
LOC110487362 NA coding upstream 129865 32770410 ~ 32775521 (-)
LOC110487370 nes coding upstream 215220 32855765 ~ 32868211 (-)
LOC110487437 LOC105030512 coding upstream 243863 32853454 ~ 32889385 (-)
LOC110487461 LOC106605311 coding upstream 298502 32939047 ~ 32968489 (-)
G133992 NA non-coding downstream 85272 32547489 ~ 32547707 (-)
G133990 NA non-coding downstream 86976 32545775 ~ 32546003 (-)
G133962 LOC100380853 non-coding downstream 122439 32510155 ~ 32510540 (-)
G133960 LOC106562530 non-coding downstream 123606 32509131 ~ 32509373 (-)
G133118 NA non-coding downstream 173602 32459146 ~ 32459377 (-)
G134027 NA non-coding upstream 42065 32682610 ~ 32684723 (-)
G134161 NA non-coding upstream 207117 32847662 ~ 32848177 (-)
G134160 LOC106605316 non-coding upstream 207908 32848453 ~ 32852110 (-)
LOC110486999 prdm1 other downstream 984184 31631886 ~ 31648795 (-)
G132197 NA other downstream 1089970 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 1434167 31196917 ~ 31199241 (-)
LOC110486852 LOC106605360 other downstream 1436687 31192419 ~ 31196292 (-)
trnae-cuc LOC106605367 other downstream 1733415 30897026 ~ 30899564 (-)
G134102 NA other upstream 107663 32748208 ~ 32788121 (-)
LOC110487618 LOC100380645 other upstream 572119 33208500 ~ 33225125 (-)
G134668 NA other upstream 1224943 33865488 ~ 33865937 (-)
G135575 NA other upstream 1963670 34604215 ~ 34604478 (-)

Expression


Co-expression Network