LOC110487362


Basic Information

Item Value
gene id LOC110487362
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32770410 ~ 32775521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468227.2
CGGACTAATGGTGAGATCATGTGTGAGTGTATCCCTCCGTCTCTTCTGTTTTACTTCCACGTGAAAGGTGTGTGGGTgcagctccctctctctgcagtgacCTGCTGCTCCGCTGCACTTGGCTTCCAAAGCATCCTGTCGGCTGCCTAGCAACACTCAGTGTCCATGGCAACGGAGCCAACAAACCTTCCCACCTCCATCAGCTGTACCCCCCACAATCAGAGCTTGTGGCAATCAGGAGGAGGACTAGAATCCAGTATCTGGGCTATAGTGAACAGGTGGAGTCAAATGTTACAGTGAAGCAATCACCATGTGTTAATACTAGTTGTTTTTTCAGCTAAGACTACCAAACTGCTGAGGGTTCAAAAAGGGTGACAGGTTCTCGAGAACCAGGATGCCCAAATGAGAGACTAGAGGGAGGCCAAGTAATTGCACCAGTGTAGAGTTTCCAAAGTGCAGAGGCTGTATCTGTTATTTTGTAAAGGGAATACAACATAAAAAGTAACTAAGCCAGGGTCAAATGAGTTTTCAACTTTGACCTTCTTGTCTTTCATTCCGATATGAAAAAACTGTAAAAAGTTATGATTGAGATTGTCTTAACAGAAGCCCACCTGAGTTTTCGTTCTGATTAGAGACAGACATGGATGcaaataggcctactgtatacATTAATGTGAACAATACATTAATGGCTTTGGTTAGAGCAGACTCTtctaccctgttcctggagagctactctcctgtaggttttcgctccaattttaacctgattcagtttatcaaccagatAATTATTATTATCAGgatagattagggttggagtgaaaacctacaggacggcaGCTCTCCAGAGACAGGATTGGAAAGCCCTGGGTTAGAGGTAGTGTGCCCCCTCTAGCGGGTATAAGTAAGCATTACACCCAAGTGAAAATTGACAGCAAGGTTGTAGTTCACCTGTTCCACAGATATCATGAATTCACAGTTGACGACTTACACCATTTATGACATTTTTACATTGCTTTGTAACTGGTTTGATATATGATCACATTGAGATGAGGACATGACTGTGTGTGGGCTTAATTAAATTGAATCCACATGTAGGATTTACACACTTGTAAACATGCCTTTTCACCCCTGTTGTTTAGGGTTTGATTGATTCTGGTTCTACACAGTCAGTACATTATGCCTACTCTCTCAGTTGCTGATGTTATTTAAAAGTAACCCATTTTAAAGCAGCTGATGGATATAGAATGGCCATGTAGTGTTACAGTGAATGGAGGCTTAGAGGCCTATTACCATTTAAACAAAGTCTATGAGCCCAtgcattttttttattacaaTGCTAGGATACTGCATGCAAATTAATAGAATGGAAATCGGTATAATTAGGCCAATTTAATTTGACACCAATGTTTTTTGGAATAAACATCATGTAATGGACAAATAAAATCACTTGGTGGCGACCTCTATCAAGTA
>TU154429
GTCTCTTCTGTTTTACTTCCACGTGAAAGGTGTGTGGGTgcagctccctctctctgcagtgacCTGCTGCTCCGCTGCACTTGGCTTCCAAAGCATCCTGTCGGCTGCCTAGCAACACTCAGTGTCCATGGCAACGGAGCCAACAAACCTTCCCACCTCCATCAGCTGTACCCCCCACAATCAGAGCTTGTGGCAATCAGGAGGAGGACTAGAATCCAGTATCTGGGCTATAGTGAACAGGTGGAGTCAAATGTTACAGTGAAGCAATCACCATGTGTTAATACTAGTTGTTTTTTCAGCTAAGACTACCAAACTGCTGAGGGTTCAAAAAGGGTGACAGGTTCTCGAGAACCAGGATGCCCAAATGAGAGACTAGAGGGAGGCCAAGTAATTGCACCAGTGTAGAGTTTCCAAAGTGCAGAGGCTGTATCTGTTATTTTGTAAAGGGAATACAACATAAAAAGTAACTAAGCCAGGGTCAAATGAGTTTTCAACTTTGACCTTCTTGTCTTTCATTCCGATATGAAAAAACTGTAAAAAGTTATGATTGAGATTGTCTTAACAGAAGCCCACCTGAGTTTTCGT
>TU154430
TAATGGTGAGATCATGTTCCACGTGAAAGGTGTGTGGGTgcagctccctctctctgcagtgacCTGCTGCTCCGCTGCACTTGGCTTCCAAAGCATCCTGTCGGCTGCCTAGCAACACTCAGTGTCCATGGCAACGGAGCCAACAAACCTTCCCACCTCCATCAGCTGTACCCCCCACAATCAGAGCTTGTGGCAATCAGGAGGAGGACTAGAATCCAGTATCTGGGCTATAGTGAACAGGTGGAGTCAAATGTTACAGTGAAGCAATCACCATGTGTTAATACTAGTTGTTTTTTCAGCTAAGACTACCAAACTGCTGAGGGTTCAAAAAGGGTGACAGGTTCTCGAGAACCAGGATGCCCAAATGAGAGACTAGAGGGAGGCCAAGTAATTGCACCAGTGTAGAGTTTCCAAAGTGCAGAGGCTGTATCTGTTATTTTGTAAAGGGAATACAACATAAAAAGTAACTAAGCCAGGGTCAAATGAGTTTTCAACTTTGACCTTCTTGTCTTTCATTCCGATATGAAAAAACTGTAAAAAGTTATGATTGAGATTGTCTTAACAGAAGCCCACCTGAGTTTTCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468227.2 False 1476 mRNA 0.41 2 32770410 32775521
TU154429 False 585 lncRNA 0.45 2 32771263 32775483
TU154430 True 585 lncRNA 0.35 2 32771263 32775516

Neighbor

gene id symbol gene type direction distance location
LOC110514821 NA coding downstream 13544 32738829 ~ 32756992 (-)
LOC110487305 LOC106605321 coding downstream 129865 32632979 ~ 32640545 (-)
rrnad1 cl026 coding downstream 173258 32592663 ~ 32597152 (-)
ctsk catk coding downstream 264553 32498803 ~ 32505857 (-)
LOC110487241 LOC106605328 coding downstream 272416 32489604 ~ 32497994 (-)
LOC110487370 nes coding upstream 80244 32855765 ~ 32868211 (-)
LOC110487437 LOC105030512 coding upstream 108887 32853454 ~ 32889385 (-)
LOC110487461 LOC106605311 coding upstream 163526 32939047 ~ 32968489 (-)
LOC110487493 LOC106580659 coding upstream 226608 33002129 ~ 33010958 (-)
LOC110487486 raa2a coding upstream 236846 33012367 ~ 33018172 (-)
G134027 NA non-coding downstream 85687 32682610 ~ 32684723 (-)
G133992 NA non-coding downstream 222703 32547489 ~ 32547707 (-)
G133990 NA non-coding downstream 224407 32545775 ~ 32546003 (-)
G133962 LOC100380853 non-coding downstream 259870 32510155 ~ 32510540 (-)
G134161 NA non-coding upstream 72141 32847662 ~ 32848177 (-)
G134160 LOC106605316 non-coding upstream 72932 32848453 ~ 32852110 (-)
G134182 NA non-coding upstream 116194 32891715 ~ 32891916 (-)
G134253 NA non-coding upstream 205535 32981056 ~ 32982279 (-)
LOC110486999 prdm1 other downstream 1121615 31631886 ~ 31648795 (-)
G132197 NA other downstream 1227401 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 1571598 31196917 ~ 31199241 (-)
LOC110486852 LOC106605360 other downstream 1574118 31192419 ~ 31196292 (-)
LOC110487618 LOC100380645 other upstream 437143 33208500 ~ 33225125 (-)
G134668 NA other upstream 1089967 33865488 ~ 33865937 (-)
G135575 NA other upstream 1828694 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 2530846 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 2898777 35674291 ~ 35700846 (-)

Expression


Co-expression Network