LOC110487428


Basic Information

Item Value
gene id LOC110487428
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32873188 ~ 32875850 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559366.2
aagaataggAAAGCAACAGGGACGAGGAGTTTTGACAAAGAAACTGGGGTCTATGAGTAACAAATAGGAACATTTAAGGGTAGGATATGGATGTATCAGTACTTGATTGTTTCAATATTAGGGTATGGGGCATGTCTGGGAAAATGTAGGAACAAATGTGTTAATATTATTGAATATGTATGTGTCCCCTTTCTCTTCCCCACAGAGAATAAAGAGGAAGAAACAGTATATGCTGAAGTTAAGGGAAGTGCAGTCACTCAACGGAATCCTGCCACAGCAGTGGATGAGAGGCCTGCTCTCCACTCTCAACCCTTTCGAGGAGTGGCAGTGTGTTTGGGTGTTCTTTGTGTCCTCTTGGTTTCAGCCATTATAGGCCTCTATGTGTACTTCAGCACTGCCCTGTCAGAGCACAACACAAAGTTGGTGAGGGAACTGGAGCAACTAACAGATGTGCGTGCATTCCTACTGGCGGCCAATCAGGACCTTACGAACCTCAACAGTAATCTGAGTACAGCCAATCACATTTTGCGGTGTGATTATAGCAAAGTAAGCACTGCAAACCAACGTTTAGCGGCTGAGAAAGAAGCATTgtcaagagagagggatagactgAACTGGAATCTTAAGTACATATATCAGTTTGAAAATTTTCCAGTCAATCAATATTGTTCACCAAAGGATGACGTAGGAGAGAGAAAGTGTAACCCTTGTCAAAGTGGGTGGATGTTGTTCCAATCTAGTTGTTACCAGATTTTATACCATTCCAGTCCCTGGAAGACCTGGGAACAAAGCAGAGAGAATTGCAAAACAAATCATTCTGATCTGCTTGTCATAGGAAGTCAAGAGGAACAGGAATTCATTCATAACCACACTCAATACTACTTTGATATTCATCATGGATACTGGATCGGTTTGACTGACATAGCTAATGTCAACCAATGGCTCTGGGTTAATGGAAGTCACCAGACTGATGGGTTTTGGAAGAGACAAACTGGGGGGGGTAATTGCGCGCTAACTGTCCCAAATAATGAGCCTTTGGCTAATTGGAATGCTGAATCATGTAGCATGCAGAACCGTTGGATCTGTGAGAGTAGAGCCTTACTATGGTCAGATTAAATTGCAGGGACACTCTCTTAAGAGGTATTCTCACATACTGAACTTATATATTATTGCATCTCCACTTGAGAATTACATTGAGTTTTATTCTTCTAATTTAAGGACCCATGCATCTGTCTGTTGTGGTCAATTCGAATTcactcaattcaggaagtgattttaATTTACAATGGAAAACCTTCCTTAGCTGACTTCAATTTGAATTGACCCCAATCTGGttctgtttgtatgtttttgaatCAAGGATCTGTAGTAATGTAGCTATAGAAAAGTTAAAAAATAATGTTCCGTTTTGACCTTTCATATAAATCAGGCATATTTTCTTTAATGTCAATCAT

Function

NR:

description
C-type lectin domain family 12 member B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559366.2 True 1454 mRNA 0.40 6 32873188 32875850

Neighbor

gene id symbol gene type direction distance location
LOC110487398 LOC106605316 coding upstream 21045 32775600 ~ 32852143 (+)
rhbg2a rhbg2a coding upstream 188464 32673648 ~ 32684724 (+)
LOC110534753 LOC106605320 coding upstream 240333 32608262 ~ 32632855 (+)
isg20l2 isg20l2 coding upstream 267568 32597101 ~ 32605620 (+)
LOC110487342 LOC106605324 coding upstream 280946 32589189 ~ 32592242 (+)
LOC110487411 LOC106605313 coding downstream 2051 32877901 ~ 32882058 (+)
LOC110487447 LOC106605310 coding downstream 20565 32896415 ~ 32939810 (+)
LOC110487479 LOC106605309 coding downstream 112984 32988834 ~ 33002008 (+)
LOC110487536 NA coding downstream 153023 33028873 ~ 33045721 (+)
LOC110487571 m4a8a coding downstream 154460 33030310 ~ 33033853 (+)
G133324 NA non-coding upstream 28654 32844251 ~ 32844534 (+)
G133185 NA non-coding upstream 327197 32545778 ~ 32545991 (+)
G133163 NA non-coding upstream 352093 32520810 ~ 32521095 (+)
G133157 NA non-coding upstream 357981 32515008 ~ 32515207 (+)
G133374 NA non-coding downstream 105332 32981182 ~ 32982028 (+)
G133272 NA non-coding downstream 135212 33011062 ~ 33012909 (+)
G133415 NA non-coding downstream 205837 33081687 ~ 33081982 (+)
G133417 NA non-coding downstream 207498 33083348 ~ 33083575 (+)
G132342 LOC100136303 other upstream 985616 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 1506866 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 1580154 31262054 ~ 31294577 (+)
G131517 ccne2 other upstream 2123234 30748055 ~ 30749954 (+)
G131491 NA other upstream 2172565 30700182 ~ 30700623 (+)
G133473 LOC106605294 other downstream 291588 33167438 ~ 33169378 (+)
G133663 LOC106605282 other downstream 620604 33496454 ~ 33497285 (+)
G133760 LOC106605274 other downstream 938183 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 1086567 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 1812105 34687955 ~ 34692286 (+)

Expression


Co-expression Network