LOC110487437 (LOC105030512)


Basic Information

Item Value
gene id LOC110487437
gene name LOC105030512
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32853454 ~ 32889385 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036431.1
GGAAGAACAAGAAGTTTCGTATTTTCCGCTGTCGTGTTAGCGTGCTGAATTTATCCCATGGTTTCAATAGAACTGTGAAAACGTTTTTATGTATCTCTTTTCAACAACGATGTGAGTCGAGATCACCAGACGAGGTAAAGGTCTTGGTCGGCAGAAGAATGGTATGTGAGGCTATCATAGTGAATGTGGCAAGGGAGGGGTGGGACATCTTCTAGACTGGAAGTGGAATTTGGAGAGAATGGTGTGCAGGTGAAGAAGTTggttgaggaggaagaggaaggaccAGCAGCCAACGAAAGCCATGCTGGGAAGAGAAACTTTATGGATGCTTTGTGAAGTCTGCCACCCTCCTGGCAGGACTGGAGCAGCCAGAGTATAAGTCTTCCAGTACAGATGACAGCAGCAGCTCTGACGATGAGGACCAGAGACTGGAACTCTCCAGCACCACCAAGTTTAAATAATAAATGTTATTTCCCTTGGATGCTGACCTGGTGAAGGCTTGTGGAGGACGCACCGCTCAAGTATTTTGCTTGTCACCAATAAGTTTGTAATAAACCATAAACAAATCACATGAATGTGTATTCTATCTTGGTGCATGCTGTTAGTGAAGGGCTTGAACCTGGTCTTGCATGTCTTAATAAGGAAGCTAAACATTGTTTGTCCCTATTCCTGTTCGCCACAGAGGAGCCAGATACGGCCTTACCATGAGTGCCAAGCTAGCCAGACTGGAGCAGCAGGAGCAAGAGTTCATGGCAAAGTATGGCAATAAAAACCAATTAGCGGGTGCAACACCAGATAGCGTCACCACCGTTACCCAGCCAGCTGCCCAGATCCCTGAGGATGAACTGAAGGATGagacccggggggggggggggg
>TU154506
TTAGCGTGCTGAATTTATCCCATGGTTTCAATAGAACTGTGAAAACGTTTTTATGTATCTCTTTTCAACAACGATGTGAGTCGAGATCACCAGACGAGGTAAAAGTAATTAGTTCCATTACTCCGGTCGTTGTTTATGATTTCATTTCCAGCCCTTATTAGCACAGTAACGTTAATGACTTGCATTCAAGTGTAAATGTTCTCTTAAAactacctagctaacgttactatTGTTAGATTACGTTAGCTAAACCCAAACTGAACTTTGACTGagcagtattttttattttttttgcagacTTCCAAACGGAAATGTGTATATTATATTTGAGAAAATCGTGTATTCTTTGTGCATTACTGTTCAACTATCTAATTAATACATAAATGTTGACACCTGAGACTGAAGACCTGCCAAATGCAGTGTAATATAGCTAACATATTCATTTATTTGGAAGTAAATGGCAGAAACTGTTAAGGGAAAGAGCCGTGGACTGAAGTTTGCAGAGCAACCACTACtgtttcagtatgatatgttggataaaggaataaagacagacaccaatgtCAGGTTCAATAGCCTTGTTTGTGCATTGTACAAATCCCTACACATGGAGTCCGGGGAACAGTCCGGCTAGTCGAATACCTATCAACTTGACTCCGTGTTAGATTTTCAGAAATATATTTAGTAACAGTATAGTCAATTAATGATAGACAATCTGTTAGCTAATGAACATCGATTACGGGCAGGAGTttctcaaatcaaagtttatttgtcacgtgcaaccttacagtgaaatgcttacttacagtgcAATTTCTAAGTTAAAaaaggtgaacaataggtaagtaaagaaataaaaacaacagtgaaaataacagtagcaatgATAATATATCAAGTGTAACGTTATACATATGTCAGCTTTAACTTGCTTGTAAATTACATTAGTAGGCAGAGCTATTTTGGTGATTTTATGGTATATCATCAAAAAATAAATCCATCACAGCACGTTTTTGGACTCATTCAGcagtttttttaaaatttttttttaccagattTAAGTACAATACCATTGGAATTTAATGTTGAAAGTTAAATTTATATTCCTAAAACGTGTGTTAAATGATGCTGGCACTGCTTCCTTTCCACAAGCCATTTGGATAAATAGCCCAATGTCAAAACAGTTTTAACGTGGCCAAATCAATACCAAATATGCAGAAACAGTGTATCTTGAAAACCTAAACATAAAATGTACTATCATACATGTGCAACAATTAGTAATCATATTACTTGTATTTTTTTATGCACCATAAACCCTGGTTTGACTGGTGGCAATACATCATTGATATCGATTAGGGGGGAAATCGGGTACGCCCTGTTGAAACTAAAAACACTGGAGATATTTTTACATCACCTGTAGAAGACAGTGGGCTACATTGGGGTGATGCATTTTGATTTGAGGGTTGCCTAAACAGAAAAAGAAACCCAACACATTTGTCAATCACTCGTATCGAAAACCACATggaataatgtgtacatcactgAGGACAATTTTGTAGGAGACTGCTAGCTACAATTTTTGAACAGGGGGCAAACGTTTGGAGTGTAGCGCTGTTTAAACTAACACTATTCAAAGGCCACACAGAATCCTGGAATAACCTGTATATGGTTGGTTAGATGAGAACTTGTAGAAGGCTGATATCTATATTTTGGAATGTCGGACGTTGATTTCCCGAAGCTGCATCACAAAAAAGGGAACAAACCACTCTGTTAACCCAAATGTTGTGATTTGTTTAAGTTATCACGACCCATAGGATATCAACAGTGATGATGGTTGGCTGATATTTAAGTGATAGTTTGATTgtcatagagagagactgacccAAATTTTTCGTGCCATTTCATTAATCCCAGCACGTGTGTACAAAACGTGAGTACAAAACCAAATATATTGATATGTTTTAAGTAATCAATCTTATGTCATCGTGATGACTATATTCTTTTACACTAACATCACCAATCTGAGGTAAAAGGATATGTAATTCCactaaataaactcagcaaaaaaaagagaagtccctttttcaggacccggtctttcaaagataatttgtaaaaatccaaataacttcacagatcttcattggaaagggtttaaacatggtttcccatgcttgttcattgaaccataaacaattgatGAACATGCACCTTTGGAACGGTCATTAATTAAGACccaaacagcttacagacggtaggcaattaaggtcacagttatgaaaacgtaggacactaaagaggcctttctactgactctggaaaaacaccaaaagaaagatgccctgggtccctgctcatctgcatgaacgtgccttaggcccTTAggcagggcaataaattgcaatgtccgtactgtgagaagcctaagacagccctcgcagtggcagaccacgtgtaacaacacctgcacaggatcggtacatccgaacatcacacctgcgggacaggtacaggatgccaacaacaactgccagagttacaccaggaacgcacaatccctctatcagtgctcagactgtccacaatagtctgagagaggctggactgagggcttgtaggcctgttgtaaggcaggtcctcaccagacatcaccggcaacaacgtcgcctatgggcgccaacccaccgtcgctggaccagacaggactggcgaaaattgctcttcactgacgagtcgtagTTTTGTCTCTTTGGGGGTGGTgatcggattcacgtttatcatcaaaggaatgagcgttacaccgagccCTGTACTCTGGtacgggatcaatttggaggtggagggtccttcgtggtctggggcagtgtgtcacagcatcattggactgagcttgtcatcattgtaggcaatctcaatgctgtgcgttaaaGGGAAAGATGTCctactccctcatgtggtacccctcctgcaggctcatcctgacatgaccctctagcatgacaatgccaccagccatactgctcgttctgtgcgtgatttcctgcaagacaggaatgttagtgttctgccatggccaccgaagagcccggatctcaatcccattgagcacgtctgggacctgttgaacCGGATGGGAGGGTGAGTGCTAGAGCCatccccccccccagaaatgtccgggaacttgcaggtgacttggtggaagagtggggtaacatctcacagcaagacctggcaaatctggtgcagtccacgaggaggagattcactgcagtacttaatgcagctggtggccacaccagataccgactgttacttttgattttgacccccccccccccccccccgttcagggacacattattcaatttctgtggaacttgttcagtttgtctcagttgttgaatcttgttatgttcatacaaatatttacacatgttaggtTTACTCAAAATGAACGCAGTTGacagaggacgtttcttttttttgccgagtttattATAGGTTGAAAATGCAAGCTTGTAAGGTATTAACAAAATGTCCACATTAGGGAAATGAGCGCAATATTCAATATGgcaaaataatgaaacatgtcaaTTTAAGATGATTGTGTCAAACTATTGCAACAATGACATCTATTTCTCACTAATTTAATGATTTAGTGTTAAAAAAATGCTCTCAAACAATTACATTGGGCGTTCTAGACTAGAGCCTATGTCTGTGCAGTAGACGGAATGTTTGCTGTCCCTACTAGTAGTAGTTGCCAGTTGTATCTTATTCTGTGTTATGAAAGGTAACTAGGTCTAATGTTCTAAGTCTACCACTAATAGAAGACCCCTCACTGTTCACAGGTAAAGGTCTTGGTCGGCAGAAGAATGGTATGTGAGGCTATCATAGTGAATGTGGCAAGGGAGGGGTGGGACATCTTCTAGACTGGAAGTGGAATTTGGAGAGGTAAGTCCTCAGAAGGGGTGTGTGAAATGAAAGAGTATTTtaccactaccacacacacacacacacacacacacacacgctt
>TU154514
TTAGCGTGCTGAATTTATCCCATGGTTTCAATAGAACTGTGAAAACGTTTTTATGTATCTCTTTTCAACAACGATGTGAGTCGAGATCACCAGACGAGGTAAAGGTCTTGGTCGGCAGAAGAATGGTATGTGAGGCTATCATAGTGAATGTGGCAAGGGAGGGGTGGGACATCTTCTAGACTGGAAGTGGAATTTGGAGAGAATGGTGTGCAGGTGAAGAAGTTggttgaggaggaagaggaaggaccAGCAGCCAACGAAAGCCATGCTGGGAAGAGAAACTTTATGGATGCTTTGTGAAGTCTGCCACCCTCCTGGCAGGACTGGAGCAGCCAGAGTATAAGTCTTCCAGTACAGATGACAGCAGCAGCTCTGACGATGAGGACCAGAGACTGGAACTCTCCAGCACCACCAAGTAAGAACCTCACTGCCCAATACCATCCACCACCATACAGGGATTGTTATCAGTTTGAAGGTTATTCATTTTCATATCAATGTGAAGATTAACGACAGTGGTTTTATGTACTCACAGGTTTAAATAATAAATGTTATTTCCCTTGGATGCTGACCTGGTGAAGGCTTGTGGAGGACGCACCGCTCAAGTATTTTGCTTGTCACCAATAAGTTTGTAATAAACCATAAACAAATCACATGAATGTGTATTCTATCTTGGTGCATGCTGTTAGTGAAGGGCTTGAACCTGGTCTTGCATGTCTTAATAAGGAAGCTAAACATTGTTTGTCCCTATTCCTGTTCGCCACAGAGGAGCCAGATACGGCCTTACCATGAGTGCCAAGCTAGCCAGACTGGAGCAGCAGGAGCAAGAGTTCATGGCAAAGTATGGCAATAAAAACCAATTAGCGGGTGCAACACCAGATAGCGTCACCACCGTTACCCAGCCA
>TU154510
TTAGCGTGCTGAATTTATCCCATGGTTTCAATAGAACTGTGAAAACGTTTTTATGTATCTCTTTTCAACAACGATGTGAGTCGAGATCACCAGACGAGGTAAAGGTCTTGGTCGGCAGAAGAATGGTATGTGAGGCTATCATAGTGAATGTGGCAAGGGAGGGGTGGGACATCTTCTAGACTGGAAGTGGAATTTGGAGAGAATGGTGTGCAGGTGAAGAAGTTggttgaggaggaagaggaaggaccAGCAGCCAACGAAAGCCATGCTGGGAAGAGAAACTTTATGGATGCTTTGTGAAGTCTGCCACCCTCCTGGCAGGACTGGAGCAGCCAGAGTATAAGTCTTCCAGTACAGATGACAGCAGCAGCTCTGACGATGAGGACCAGAGACTGGAACTCTCCAGCACCACCAAGTAAGAACCTCACTGCCCAATACCATCCACCACCATACAGGGATTGTTATCAGTTTGAAGGTTATTCATTTTCATATCAATGTGAAGATTAACGACAGTGGTTTTATGTACTCACAGGTTTAAATAATAAATGTTATTTCCCTTGGATGCTGACCTGGTGAAGGCTTGTGGAGGACGCACCGCTCAAGTATTTTGCTTGTCACCAATAAGTTTGTAATAAACCATAAACAAATCACATGAATGTGTATTCTATCTTGGTGCATGCTGTTAGTGAAGGGCTTGAACCTGGTCTTGCATGTCTTAATAAGGAAGCTAAACATTGTTTGTCCCTATTCCTGTTCGCCACAGAGGAGCCAGATACGGCCTTACCATGAGTGCCA
>TU154511
TTAGCGTGCTGAATTTATCCCATGGTTTCAATAGAACTGTGAAAACGTTTTTATGTATCTCTTTTCAACAACGATGTGAGTCGAGATCACCAGACGAGGTAAAGGTCTTGGTCGGCAGAAGAATGGTATGTGAGGCTATCATAGTGAATGTGGCAAGGGAGGGGTGGGACATCTTCTAGACTGGAAGTGGAATTTGGAGAGAATGGTGTGCAGGTGAAGAAGTTggttgaggaggaagaggaaggaccAGCAGCCAACGAAAGCCATGCTGGGAAGAGAAACTTTATGGATGCTTTGTGAAGTCTGCCACCCTCCTGGCAGGACTGGAGCAGCCAGAGTATAAGTCTTCCAGTACAGATGACAGCAGCAGCTCTGACGATGAGGACCAGAGACTGGAACTCTCCAGCACCACCAAGCTTGTGGAGGACGCACCGCTCAAGTATTTTGCTTGTCACCAATAAGTTTGTAATAAACCATAAACAAATCACATGAATGTGTATTCTATCTTGGTGCATGCTGTTAGTGAAGGGCTTGAACCTGGTCTTGCATGTCTTAATAAGGAAGCTAAACATTGTTTGTCCCTATTCCTGTTCGCCACAGAGGAGCCAGATACGGCCTTACCATGAGTGCCA
>TU154504
TTAGCGTGCTGAATTTATCCCATGGTTTCAATAGAACTGTGAAAACGTTTTTATGTATCTCTTTTCAACAACGATGTGAGTCGAGATCACCAGACGAGGTAAAGGTCTTGGTCGGCAGAAGAATGGTATGTGAGGCTATCATAGTGAATGTGGCAAGGGAGGGGTGGGACATCTTCTAGACTGGAAGTGGAATTTGGAGAGAATGGTGTGCAGGTGAAGAAGTTggttgaggaggaagaggaaggaccAGCAGCCAACGAAAGCCATGCTGGGAAGAGAAACTTTATGGATGCTTTGTGAAGTCTGCCACCCTCCTGGCAGGACTGGAGCAGCCAGAGTATAAGTCTTCCAGTACAGATGACAGCAGCAGCTCTGACGATGAGGACCAGAGACTGGAACTCTCCAGCACCACCAAGTTTAAATAATAAATGTTATTTCCCTTGGATGCTGACCTGGTGAAGGCTTGTGGAGGACGCACCGCTCAAGTATTTTGCTTGTCACCAATAAGTTTGTAATAAACCATAAACAAATC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036431.1 False 876 mRNA 0.48 5 32884408 32889385
TU154506 False 4033 lncRNA 0.41 2 32853454 32889349
TU154514 False 902 lncRNA 0.45 4 32884463 32889349
TU154510 False 795 lncRNA 0.45 4 32884570 32889349
TU154511 False 632 lncRNA 0.47 5 32884570 32889349
TU154504 True 532 lncRNA 0.46 5 32884716 32889349

Neighbor

gene id symbol gene type direction distance location
LOC110487370 nes coding downstream 16197 32855765 ~ 32868211 (-)
LOC110487362 NA coding downstream 108887 32770410 ~ 32775521 (-)
LOC110514821 NA coding downstream 127542 32738829 ~ 32756992 (-)
LOC110487305 LOC106605321 coding downstream 243863 32632979 ~ 32640545 (-)
rrnad1 cl026 coding downstream 287256 32592663 ~ 32597152 (-)
LOC110487461 LOC106605311 coding upstream 49662 32939047 ~ 32968489 (-)
LOC110487493 LOC106580659 coding upstream 112744 33002129 ~ 33010958 (-)
LOC110487486 raa2a coding upstream 122982 33012367 ~ 33018172 (-)
LOC110487507 LOC106580651 coding upstream 127750 33017135 ~ 33020297 (-)
LOC110487525 LOC106605242 coding upstream 131436 33020821 ~ 33027137 (-)
G134160 LOC106605316 non-coding downstream 32298 32848453 ~ 32852110 (-)
G134161 NA non-coding downstream 36231 32847662 ~ 32848177 (-)
G134027 NA non-coding downstream 199685 32682610 ~ 32684723 (-)
G134182 NA non-coding upstream 2330 32891715 ~ 32891916 (-)
G134253 NA non-coding upstream 91671 32981056 ~ 32982279 (-)
G134254 NA non-coding upstream 92051 32981436 ~ 32981888 (-)
G134229 NA non-coding upstream 104992 32994377 ~ 33001917 (-)
G134227 m4a8a non-coding upstream 141864 33031249 ~ 33049593 (-)
G134102 NA other downstream 96287 32748208 ~ 32788121 (-)
LOC110486999 prdm1 other downstream 1235613 31631886 ~ 31648795 (-)
G132197 NA other downstream 1341399 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 1685596 31196917 ~ 31199241 (-)
LOC110487618 LOC100380645 other upstream 323279 33208500 ~ 33225125 (-)
G134668 NA other upstream 976103 33865488 ~ 33865937 (-)
G135575 NA other upstream 1714830 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 2416982 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 2784913 35674291 ~ 35700846 (-)
ctsk catk coding downstream 347597 32498803 ~ 32505857 (-)

Expression


Co-expression Network