LOC110487461 (LOC106605311)


Basic Information

Item Value
gene id LOC110487461
gene name LOC106605311
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32939047 ~ 32968489 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559400.2
cGATACATGTGCAGGGAGAGACTGTGACGCAGCCATTCCAGAGCGTGAGCCAAAGGCACACAGACAGCACTGATCCTCCTCCCTATACTCCACAGGGGCACCTCAGACCCAGAGAAGAACACCTATCTACAACACACAGCGGCAGCTGAACTTCCACACAGGTCCggctgtgcagacacacacactgctccacCAGGAGGCTTCCACTCACAACCTCACACTCTCACTAAGCCTGTCTCCCAGCCAACCACCTGAACCACCTGCTGGATGTCCACTATGGAATCTCCGGGTCAGAAACGAGCCAGCCGCGGTGGGACTGCCACCCCACTCTCCCCAACCCGCATCTCTCGCCTGCAGGAGAAGGACGACCTGTGCAACCTCAACGACCGGCTGGCCGTCTACATTGACAAGGTGCGTTCGCTGGAGATAGAGAATGCTGGGCTGCGGCTGCGCATCACCGAGTCCGAGACCGAGATCAGCCGTGAGGTGACAGGCATGAAGGTGGCCTATGAGACGGAGCTTGCCGACGCCCGCAAGACCCTCGACTCGGTGGCCAAGGAGCGCGCCCGACTGCAGCTGGAGCTAGGCAAAGTCAAGGAGGATTACAAGGAGCTCAAAGTCAGAAATGGGAAGAAGGAGTCAGACCTAGAGGCAGCTCTGGCCCGGCTGAGGGATCTAGAGGCTCTGTTGAACTCTAAAGATGCCTCTTTGTCCACTGCCCTGGGGGAGAAACGCTCTCTAGATGCTGAGGTCAGGGACCTAAAGGCCCAGCTAGCCAAGCTGGAGACAGGTCTGAGCGATGCTAAGAAGCAGCTTCAGGATGAGATGCTGAGGAGAGTGGACGCTGAGAACCGCCTGCAGACCCTCAAGGAAGAACTGCAGTTCCAGAAGAACATCTACGGAGAGGAGCTGAGGGAGTCCAAGCGCAGGCACGAGTCTCGCATGGTGGAGATTGACAGTGCAGGAACAAAGCAGGATTACGAGAGTAAGCTGGCTGAGGCCCTGATGGAGCTGAGAGCCCAGCACGAGGAGCAGGTCCGCATCTATAAGGAGGAGATCGAGAAGACCTACACCTCCAAGcTGGAGAACGCCCGTCACTCCGCAGACAGGAACAGTACCCTGGTGGGGGCGGCTCACGAGGAGCTGCAGCAGACCCGCGTGCGGATGGAGGGCATGTCCTCCCAGCTCAGCCAGCTGCAGAAACAGCTGGCGGCGAGGGAGGCCAGGGTGCGTGAGCTGGAGGAGTCTCTGGCCCGGGAGCGGGACACGATGCGCCGGCGCCTggaggacaaggagagggagatgggggacaTGCGCATGCGGATGCAGCAACAGCTGGATGAATACCAGGAGCTGCTGGACATCAAACTGGCCCTGGACATGGAGATCAGCGCCTATCGTAAActgctggagggagaggaggagagACTGCGTCTGTCCCCCAGCCCTCCCCCAACCCGAGTCACTGTGTCCCGTACCACCGGCTCGGGCTCAGCACACACCCATACCACCCGTACCTCGGGCTCAGGACACAGCCACAGCGCCCGAGTGGTCCAGTCCACCAGCGGCAGCCGCAACTCCTCAGGCACGGCTAGCGCCAAGAAGAGACGGCTCCATGACAACGACAGCGAGACCTCCAGCCTGGCGGGGGGCGCCGTGACGCGTACACGCATTGCCCAGCAGGCCTCCGCTAGCGGCCGTGTCACCGTGGACGAGGTGGACCTGGAGGGGAAGTACGTCCGCCTCAGCAACAAGGCCAACGAGGACCAGCTTCTGGGCCACTGGCAGGTGAAGAGACAGGTGGGCACCAGCACCCCCATCGTCTACAAGTTCCCCCCCAAATTCAACCTCAAGGCAGGACAGACCGTCACAATTTGGGCTTCAGGAGCAGGCGGCACCCACAACCCCCCCTCAGACCTGGTGTGGAAGACCCAGAACTCATGGGGCAGCGGAGACCTGTTCCAAACCATCCTGGTCAGCGCCAATGGAGAGGAAATGGCACAGAGGAAGGTTACACGCACCCTGTTCCAGGAAGATGATGACGATGACGGCAACCACAGTGCGTGCGGTGTGGACAGTGAGTACAACCTGCGGAGCCGCACGGTGGTCTGTGGCTCATGTGGCCAGCCGTCTGACAAGAGCTGTGCCACCTCAGGGGTGTCCAGTGGCTCCTGCTCCATCAGCAGTGGAGGAGGTCTGCCTGAGGGCCTGATGTCTCCCCTCTTTATAATGGGTAGCAACTCACCCAGACAGGGAGGTCCCAGACCGGAGAACTGCTCCATCATGTAAAGCCAGGCAGGCACCAGCTTACCTGGACAAGTACCTCCCACACATGGATGGGAGACgtctttttttaaattacttttttatttcctttgtttgaTGTATGATCTGTCTTATTTTGTATGACATAATCTGCAGGTTAGATTGCCTTTGGTGTTTGGCAAAGGGCTTAGGAGCTGTATATTCACTTCAGATATATGAGCTTGTATATTCGAGTTATTGCATGTGGGCTGGGCAGATGCTTTCACTGTTTAGGGCCATATCTAGGGAGAGAGGCACAGAAAGCACCTTTAACCATTACAGTGGACTTTGATCCATAGTGGGCTTTTGCGTCATGTCTAAACTGTCACAACACTAAACACGCACAGCAGCAAACCCTGCTATGAATCAGTGGATATGGGGGCTGGAACCAGGGATCTCTGGCCTGGTATTCCAAATACACTACCATAGAATGTCCTGAATGTCACTAAATGGAGATGGAGTGAACCCCCTCTGACAGCGAGAGGATTATGGGGGTTTGTATTAGACTGAGCGATGGGATTGGTCATTCTAAAGCCATAGTTACAACTTGACTACAACTCAAACTTGACACTGTCATCAAGTGGTTTATATTTCTGAACACAAGACAGTCGTTTTTATGGAATGACATCTATATTATTACTGATGAAACAACCAGACAACTATGGTAATATGGATATAGGTTCCAAATTGTGACTTGTTTTCACAGGCTTGAAAGAGGTATGTAGTTGTTAAAGAAAGGATACCAAAACGAGATGAGCACACAGATATGGGGAAGACAAAGTAGTACTGTATTGTAAAGTTGAGTACGGTCTTgacatgacctctgacctccagAAATAGTTTCCTCTTAGAGGCTGATAATTCTTGTCTGACCTTTGTCTTGTATGACAAAACAGTTATGCCACGCTTTTTTTGTTTACGTAGTTATACTGTAGGGCAACTCATCAGATCTAGacaaaaaaatatgatttgtAGGGATTATTTTGCTTTTTTGAATCTGAGATAATTGCCAGATGGATTATAGTAATGTTACTGTAACCTTCTAATATTGACCTTCCATTTTTAGGTTTGAGGGAATGTGGCAGCTTGAGAAATAGATGTTCTGGTTTGTCAGACTCTAAAGACAGAAATCGTCTGATTTGGAAGTGTGTTGATTTTAAATGAAAGTACAATGCTTACCTTCTCGTGACAGCAGTGCAACAATGTGTACATTCTGTAACTTTGTTTGTATCAGGTGTAGTGTCAGAAAGAATGGGTACAGATAGAAAGTAAACCTTGGACAAGTAAGCCTGAGCCTGAATGGCCCGTAGGGGTAGTTGGACTATATGGTATTATCTGGCCAAAAGTTGACTTTATTTATGAACTACACAATATGTTGCATTGGCAAACATGTTGGTGCCATATTTTCAGTGTAATCAATTATCAAGGTGTCACTTTGACAAGGTCAGAAAGAGTATTTAACTTGAGAAGGAAACCTAAATGGAACTTAAACCATCTATTCCTCACATGATACCAATTTTACATTGACATGCTCTGTATTCATGTATTGTAGTCTTGAGACTATTGTCCAGAGGCCTCTCTCCCACTAAAGGAttataatggctgtgtttttctgagcTTAGTGTCTTTTCTTTTGGCCATGTTTATTCTTCTGTCTTATTTCTTTACAATTATGTCAAATGAGCTACAATCATCTACAAATATTTATCCACTGAATATATTAGAGGCATGTACAGTAGTCTGGCAGCCTTTTTATAGGATGTATAAGCAGTGAAGAGTTTCTGAGAATACTTGATACTTTATGAAAcatgaaagttttttttttgtacttCATACACATTTCTATCACTACCAATTTGGAGAAAATGTGATTATTCTCACTGCCCCAGACATACCTTAGAGAAGCTCAATAATTTTTTAacttatacatatatataattaCTTTTGTCACTTTTCAGCATTTCTTTTCTCGTCATGTCTCAAGTGCCTTATTGATACCTGCTAGTGATCATTGGAAATGATGTATTCTTTTTGCATTATGAGGGGTCAATTCCAAAGATATGTGATATTTTGTCTTTAAAGACCATGGAATTTATAGATTTACAGAGTATGTTGGCTATAGTTGCATATTTGTACGGAAATTGCCCTTGTACATAATGCTCAATTGAATTTGTAAGAAATGATTATACCTAATATGGGAAAACCATGCAATCCAGGTAGAATGAATTAGTGATGATGTACCAGCCTTTTCTGTTCAAGACGACACAATGAAAACTATTTTCCCAACAAATGCCGTCTTGTGGTTGACTTCTTAATAAAATGTCATCTGT
>XM_021559405.2
CTTTTCAAAGTATATGTCATTCAGTCCTGTCTCCCAGCCAACCACCTGAACCACCTGCTGGATGTCCACTATGGAATCTCCGGGTCAGAAACGAGCCAGCCGCGGTGGGACTGCCACCCCACTCTCCCCAACCCGCATCTCTCGCCTGCAGGAGAAGGACGACCTGTGCAACCTCAACGACCGGCTGGCCGTCTACATTGACAAGGTGCGTTCGCTGGAGATAGAGAATGCTGGGCTGCGGCTGCGCATCACCGAGTCCGAGACCGAGATCAGCCGTGAGGTGACAGGCATGAAGGTGGCCTATGAGACGGAGCTTGCCGACGCCCGCAAGACCCTCGACTCGGTGGCCAAGGAGCGCGCCCGACTGCAGCTGGAGCTAGGCAAAGTCAAGGAGGATTACAAGGAGCTCAAAGTCAGAAATGGGAAGAAGGAGTCAGACCTAGAGGCAGCTCTGGCCCGGCTGAGGGATCTAGAGGCTCTGTTGAACTCTAAAGATGCCTCTTTGTCCACTGCCCTGGGGGAGAAACGCTCTCTAGATGCTGAGGTCAGGGACCTAAAGGCCCAGCTAGCCAAGCTGGAGACAGGTCTGAGCGATGCTAAGAAGCAGCTTCAGGATGAGATGCTGAGGAGAGTGGACGCTGAGAACCGCCTGCAGACCCTCAAGGAAGAACTGCAGTTCCAGAAGAACATCTACGGAGAGGAGCTGAGGGAGTCCAAGCGCAGGCACGAGTCTCGCATGGTGGAGATTGACAGTGCAGGAACAAAGCAGGATTACGAGAGTAAGCTGGCTGAGGCCCTGATGGAGCTGAGAGCCCAGCACGAGGAGCAGGTCCGCATCTATAAGGAGGAGATCGAGAAGACCTACACCTCCAAGcTGGAGAACGCCCGTCACTCCGCAGACAGGAACAGTACCCTGGTGGGGGCGGCTCACGAGGAGCTGCAGCAGACCCGCGTGCGGATGGAGGGCATGTCCTCCCAGCTCAGCCAGCTGCAGAAACAGCTGGCGGCGAGGGAGGCCAGGGTGCGTGAGCTGGAGGAGTCTCTGGCCCGGGAGCGGGACACGATGCGCCGGCGCCTggaggacaaggagagggagatgggggacaTGCGCATGCGGATGCAGCAACAGCTGGATGAATACCAGGAGCTGCTGGACATCAAACTGGCCCTGGACATGGAGATCAGCGCCTATCGTAAActgctggagggagaggaggagagACTGCGTCTGTCCCCCAGCCCTCCCCCAACCCGAGTCACTGTGTCCCGTACCACCGGCTCGGGCTCAGCACACACCCATACCACCCGTACCTCGGGCTCAGGACACAGCCACAGCGCCCGAGTGGTCCAGTCCACCAGCGGCAGCCGCAACTCCTCAGGCACGGCTAGCGCCAAGAAGAGACGGCTCCATGACAACGACAGCGAGACCTCCAGCCTGGCGGGGGGCGCCGTGACGCGTACACGCATTGCCCAGCAGGCCTCCGCTAGCGGCCGTGTCACCGTGGACGAGGTGGACCTGGAGGGGAAGTACGTCCGCCTCAGCAACAAGGCCAACGAGGACCAGCTTCTGGGCCACTGGCAGGTGAAGAGACAGGTGGGCACCAGCACCCCCATCGTCTACAAGTTCCCCCCCAAATTCAACCTCAAGGCAGGACAGACCGTCACAATTTGGGCTTCAGGAGCAGGCGGCACCCACAACCCCCCCTCAGACCTGGTGTGGAAGACCCAGAACTCATGGGGCAGCGGAGACCTGTTCCAAACCATCCTGGTCAGCGCCAATGGAGAGGAAATGGCACAGAGGAAGGTTACACGCACCCTGTTCCAGGAAGATGATGACGATGACGGCAACCACAGTGCGTGCGGTGTGGACAGTGAGTACAACCTGCGGAGCCGCACGGTGGTCTGTGGCTCATGTGGCCAGCCGTCTGACAAGAGCTGTGCCACCTCAGGGGTGTCCAGTGGCTCCTGCTCCATCAGCAGTGGAGGAGGTCTGCCTGAGGGCCTGATGTCTCCCCTCTTTATAATGGGTAGCAACTCACCCAGACAGGGAGGTCCCAGACCGGAGAACTGCTCCATCATGTAA
>XM_036946113.1
GTATGCCAGGTAGTTTACAATTAGGCTACATCAGTATTTCAAACAAATTGTAGGCTACTTACATTTCACTTACGGGTGACAAATGCGTATGTTTTTGAAGTGACTTTCTTTCATCAGTCAATAAACCAAAAAGTCCCCAACTGGTTGTGGGGCACCTCAGACCCAGAGAAGAACACCTATCTACAACACACAGCGGCAGCTGAACTTCCACACAGGTCCggctgtgcagacacacacactgctccacCAGGAGGCTTCCACTCACAACCTCACACTCTCACTAAGCCTGTCTCCCAGCCAACCACCTGAACCACCTGCTGGATGTCCACTATGGAATCTCCGGGTCAGAAACGAGCCAGCCGCGGTGGGACTGCCACCCCACTCTCCCCAACCCGCATCTCTCGCCTGCAGGAGAAGGACGACCTGTGCAACCTCAACGACCGGCTGGCCGTCTACATTGACAAGGTGCGTTCGCTGGAGATAGAGAATGCTGGGCTGCGGCTGCGCATCACCGAGTCCGAGACCGAGATCAGCCGTGAGGTGACAGGCATGAAGGTGGCCTATGAGACGGAGCTTGCCGACGCCCGCAAGACCCTCGACTCGGTGGCCAAGGAGCGCGCCCGACTGCAGCTGGAGCTAGGCAAAGTCAAGGAGGATTACAAGGAGCTCAAAGTCAGAAATGGGAAGAAGGAGTCAGACCTAGAGGCAGCTCTGGCCCGGCTGAGGGATCTAGAGGCTCTGTTGAACTCTAAAGATGCCTCTTTGTCCACTGCCCTGGGGGAGAAACGCTCTCTAGATGCTGAGGTCAGGGACCTAAAGGCCCAGCTAGCCAAGCTGGAGACAGGTCTGAGCGATGCTAAGAAGCAGCTTCAGGATGAGATGCTGAGGAGAGTGGACGCTGAGAACCGCCTGCAGACCCTCAAGGAAGAACTGCAGTTCCAGAAGAACATCTACGGAGAGGAGCTGAGGGAGTCCAAGCGCAGGCACGAGTCTCGCATGGTGGAGATTGACAGTGCAGGAACAAAGCAGGATTACGAGAGTAAGCTGGCTGAGGCCCTGATGGAGCTGAGAGCCCAGCACGAGGAGCAGGTCCGCATCTATAAGGAGGAGATCGAGAAGACCTACACCTCCAAGcTGGAGAACGCCCGTCACTCCGCAGACAGGAACAGTACCCTGGTGGGGGCGGCTCACGAGGAGCTGCAGCAGACCCGCGTGCGGATGGAGGGCATGTCCTCCCAGCTCAGCCAGCTGCAGAAACAGCTGGCGGCGAGGGAGGCCAGGGTGCGTGAGCTGGAGGAGTCTCTGGCCCGGGAGCGGGACACGATGCGCCGGCGCCTggaggacaaggagagggagatgggggacaTGCGCATGCGGATGCAGCAACAGCTGGATGAATACCAGGAGCTGCTGGACATCAAACTGGCCCTGGACATGGAGATCAGCGCCTATCGTAAActgctggagggagaggaggagagACTGCGTCTGTCCCCCAGCCCTCCCCCAACCCGAGTCACTGTGTCCCGTACCACCGGCTCGGGCTCAGCACACACCCATACCACCCGTACCTCGGGCTCAGGACACAGCCACAGCGCCCGAGTGGTCCAGTCCACCAGCGGCAGCCGCAACTCCTCAGGCACGGCTAGCGCCAAGAAGAGACGGCTCCATGACAACGACAGCGAGACCTCCAGCCTGGCGGGGGGCGCCGTGACGCGTACACGCATTGCCCAGCAGGCCTCCGCTAGCGGCCGTGTCACCGTGGACGAGGTGGACCTGGAGGGGAAGTACGTCCGCCTCAGCAACAAGGCCAACGAGGACCAGCTTCTGGGCCACTGGCAGGTGAAGAGACAGGTGGGCACCAGCACCCCCATCGTCTACAAGTTCCCCCCCAAATTCAACCTCAAGGCAGGACAGACCGTCACAATTTGGGCTTCAGGAGCAGGCGGCACCCACAACCCCCCCTCAGACCTGGTGTGGAAGACCCAGAACTCATGGGGCAGCGGAGACCTGTTCCAAACCATCCTGGTCAGCGCCAATGGAGAGGAAATGGCACAGAGGAAGGTTACACGCACCCTGTTCCAGGAAGATGATGACGATGACGGCAACCACAGTGCGTGCGGTGTGGACAGTGAGTACAACCTGCGGAGCCGCACGGTGGTCTGTGGCTCATGTGGCCAGCCGTCTGACAAGAGCTGTGCCACCTCAGGGGTGTCCAGTGGCTCCTGCTCCATCAGCAGTGGAGGAGGTCTGCCTGAGGGCCTGATGTCTCCCCTCTTTATAATGGGTAGCAACTCACCCAGACAGGGAGGTCCCAGACCGGAGAACTGCTCCATCATGTAA

Function

NR:

description
lamin-A-like

GO: NA

KEGG:

id description
K12641 LMNA; lamin A/C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559400.2 False 4634 mRNA 0.49 13 32939047 32963094
XM_021559405.2 False 2083 mRNA 0.61 13 32941392 32962673
XM_036946113.1 True 2343 mRNA 0.59 14 32941392 32968489

Neighbor

gene id symbol gene type direction distance location
LOC110487437 LOC105030512 coding downstream 49662 32853454 ~ 32889385 (-)
LOC110487370 nes coding downstream 70836 32855765 ~ 32868211 (-)
LOC110487362 NA coding downstream 163526 32770410 ~ 32775521 (-)
LOC110514821 NA coding downstream 182181 32738829 ~ 32756992 (-)
LOC110487305 LOC106605321 coding downstream 298502 32632979 ~ 32640545 (-)
LOC110487493 LOC106580659 coding upstream 33640 33002129 ~ 33010958 (-)
LOC110487486 raa2a coding upstream 43878 33012367 ~ 33018172 (-)
LOC110487507 LOC106580651 coding upstream 48646 33017135 ~ 33020297 (-)
LOC110487525 LOC106605242 coding upstream 52332 33020821 ~ 33027137 (-)
LOC110487583 LOC106605302 coding upstream 88516 33057005 ~ 33074880 (-)
G134182 NA non-coding downstream 47131 32891715 ~ 32891916 (-)
G134160 LOC106605316 non-coding downstream 86937 32848453 ~ 32852110 (-)
G134161 NA non-coding downstream 90870 32847662 ~ 32848177 (-)
G134253 NA non-coding upstream 12567 32981056 ~ 32982279 (-)
G134254 NA non-coding upstream 12947 32981436 ~ 32981888 (-)
G134229 NA non-coding upstream 25888 32994377 ~ 33001917 (-)
G134227 m4a8a non-coding upstream 62760 33031249 ~ 33049593 (-)
G134231 NA non-coding upstream 116446 33084935 ~ 33106505 (-)
G134102 NA other downstream 150926 32748208 ~ 32788121 (-)
LOC110486999 prdm1 other downstream 1290252 31631886 ~ 31648795 (-)
G132197 NA other downstream 1396038 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 1740235 31196917 ~ 31199241 (-)
LOC110487618 LOC100380645 other upstream 244175 33208500 ~ 33225125 (-)
G134668 NA other upstream 896999 33865488 ~ 33865937 (-)
G135575 NA other upstream 1635726 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 2337878 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 2705809 35674291 ~ 35700846 (-)

Expression


Co-expression Network