LOC110487493 (LOC106580659)


Basic Information

Item Value
gene id LOC110487493
gene name LOC106580659
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33002129 ~ 33010958 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946207.1
AAGGGCGGGGCTAGAAACTCGATGTTACGTCGCTCGGAAATGGCAAATTACAAGTGGTAGGGAAGAGGAGTCGAAAGTTTGTGAAAGGTAGAAACGTTGAAGAAATGACGAATAGAGAAGACGAATATGACTATCTTTTCAAAGTGGTGCTGATTGGGGACTCTGGAGTGGGGAAGAGTAACCTGCTGTCCCGCTTCACCCGTAACGAGTTCAACCTGGAGAGCAAGAGCACCATTGGGGTGGAGTTTGCCACGCGCAGCATCCATGTGGAGGGCAAGACCGTCAAGGCCCAGATCTGGGACACGGCAGGACAGGAGCGCTACAGAGCCATCACCTCCGCGTACTACCGTGGGGCAGTGGGGGCTCTGCTGGTGTACGACATCGCCAAGCACCTGACGTATGAAAACGCTGAACGCTGGCTGAAGGAGCTGCAGGACCACGCTGACAGCAACATCGTCATCATGCTGGTGGGCAACAAGAGTGACCTGCGCCACCTCAGGGCCGTGCCCACGGACGAGGCCAAGGCCTTGGCAGAGAAGCATGGACTGTCTTTCCTGGAGACCTCGGCGTTAGACTCCTCTAATGTGGAGCTGGCTTTCCAGACCATTCTCACAGCCATCTACAACATTGTGTCCCAGAGGCAAATGACGGGCCGCAGCGACACCGACTTCTCGCCCAACTCCAATGTGGTGCCGATCACGGTGCAGCCCACGCAGAACGCTGCCAAGTCGAGTGCCTGCTGCCAGAACAACTGAGGCCTCACCACCGTCAGGGAGAGTCAGGGACAGACAGGTAGACGGAGAGGGAGGACTGGGAGATGAAGAGAAACCTAGAGACAAGGATACAGGCAGACAGAAACAAGGGGAGAGatacaaaggggggggggggggggcaaccgaGTGTTTCTGTAGCCTCTTTGCATTGTTTCTTCTGAAGTCTGTCCCCATTTAATTCAATAAGCTTTATGGTTATGCCTTGACTTGATCGGTTTTAAATATGAAAGAGGACATGATTTGAATTCATTTACATGAATTGAGAAATTGAGCATGTTAGGGCATGGTCCGCCATATCTTTACACAGTTTTTGTCTCACTCATTGTGAACTGATCCCCGCCCATTGTCAGCTCAATTAATAAGCCTGTGAACACACCCAATTCAATAGCAAACGGGCAATAAGATTCGGCAGTGAAGACCTGACTTCACTGaagtgtaaccccccccccccccccccccctctccattgTCAGTCAGCTCCTCCCAAACTTATTTGAGTTTGTCCCAATGATATTTATTTAACACTATATATTGAGGTCTTCTTTGACCAAAGGGTATGTGCTAACATGCAACACTGGGTGGGTTTGATCTGAAGCTGCTTACTATATATGAAGGGTGTCCTCTATCTTTTTTTTCTTGATTTCACTGGTAATCAAATCCTTTTATGAGGGAGTTATTAAATGTAACTAcccttggctaatggggaaacGAGGAGTTATGCCATCTCATCCCAAATGTACCTGGTCGAATGTCAGGCCAATCTAAACTGCACAAAATGGGGGTCCGTGGAGAACTTTTCATGTCCATTTTATCAGTGCACTTCGACTTCCCTTTGTCTTTACACATAATAAAGTTTGCTCTTCTGATGAAACCCATTACAAAGTACTTTGTGCGCAGCAATTTTTCTCTCACAGGCCTATCTTCTTTGCTAACAAACCAGTCTTGCTCCTTTACCGCTGTGAACCATCCTTTTTTTTCTGTTTTACCTGAATTGCTGTCATTTTCCCTGTGGCTGTGGAGATATGGGAGGGTGATGGGGGGATATTGGTTGTAGTGGTGCTGGTCATATACCATGGTCTCAGTGGAGCCCTCCCTGCTGTCCTGGATGGATGGACAGCTCATGTTGCAAGAGATGGGTAGTAAGGGCACTCAGCCTTGCCCGCTGCTGGGTCTCTGATGTACACAAGACGGCTTGTTTTACTGTAAATTAACTCCATTGTAACTGGAACAGTATCATGCCTTCTGGGATATCCCATAAGAGTATCCCAGGTCTCTTTGTATGgttttattttctcttttttctgggtgtgtgtagttctgtcatGTTGGTAAGAGTAAGCACTACGGAGGATGCTAGCCCTTATAGATCTGATAGATTGGCAAAAGAGGGGAGGTGTGGGGAAAGTTTCAGGGTGCCATTACCACAGCCAAAAGGTTCACAGTGTGAACAGTCATTATCCTGCTGAGTTTTTTTCACCCTTGTGGCATTCCCAATAGTAAATTGGGTAGTAAAGGTTAggtttttaaaacatttaattcTCATGTGTATATTTAGATTGCATATgtataaataaatgtaatttctTAAGTCTTGCTCCTTA

Function

NR:

description
ras-related protein Rab-11A-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07904 RAB11A; Ras-related protein Rab-11A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946207.1 True 2374 mRNA 0.47 6 33002129 33010958

Neighbor

gene id symbol gene type direction distance location
LOC110487461 LOC106605311 coding downstream 33640 32939047 ~ 32968489 (-)
LOC110487437 LOC105030512 coding downstream 112744 32853454 ~ 32889385 (-)
LOC110487370 nes coding downstream 133918 32855765 ~ 32868211 (-)
LOC110487362 NA coding downstream 226608 32770410 ~ 32775521 (-)
LOC110514821 NA coding downstream 245263 32738829 ~ 32756992 (-)
LOC110487486 raa2a coding upstream 1409 33012367 ~ 33018172 (-)
LOC110487507 LOC106580651 coding upstream 6177 33017135 ~ 33020297 (-)
LOC110487525 LOC106605242 coding upstream 9863 33020821 ~ 33027137 (-)
LOC110487583 LOC106605302 coding upstream 46047 33057005 ~ 33074880 (-)
LOC118936288 LOC106605301 coding upstream 64325 33075283 ~ 33080028 (-)
G134229 NA non-coding downstream 212 32994377 ~ 33001917 (-)
G134253 NA non-coding downstream 19850 32981056 ~ 32982279 (-)
G134254 NA non-coding downstream 20241 32981436 ~ 32981888 (-)
G134182 NA non-coding downstream 110213 32891715 ~ 32891916 (-)
G134227 m4a8a non-coding upstream 20291 33031249 ~ 33049593 (-)
G134231 NA non-coding upstream 73977 33084935 ~ 33106505 (-)
LOC110487587 LOC106605297 non-coding upstream 133445 33144374 ~ 33173493 (-)
G134361 NA non-coding upstream 220038 33230996 ~ 33231201 (-)
G134364 NA non-coding upstream 225007 33235965 ~ 33236189 (-)
G134102 NA other downstream 214008 32748208 ~ 32788121 (-)
LOC110486999 prdm1 other downstream 1353334 31631886 ~ 31648795 (-)
G132197 NA other downstream 1459120 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 1803317 31196917 ~ 31199241 (-)
LOC110487618 LOC100380645 other upstream 201706 33208500 ~ 33225125 (-)
G134668 NA other upstream 854530 33865488 ~ 33865937 (-)
G135575 NA other upstream 1593257 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 2295409 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 2663340 35674291 ~ 35700846 (-)

Expression


Co-expression Network