LOC110487486 (raa2a)


Basic Information

Item Value
gene id LOC110487486
gene name raa2a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33012367 ~ 33018172 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559423.2
ATCATTCCTCAGCAGAACTACCTGATGACACAGCGGAGCAAGTTCCTTGTAAACAATCTAGGTTTCTATTAAACGTAGAGGGGGACAGGTGACTTGCAAAGTGTTTGTGCGGCTCTTTTAAATCTGAAGATTAGGGTGAGTGGCTTCTGGGGAAGTGTCATCTTTCCTTTCTCCCCTCACACTCTTGAGAGCTGGACCACTGAAGGTGTACCTCATGGGTTCAGATGAGGCCTACAACTTTGTCTTTAAGGTGGTTCTTATAGGTGAGTCTGGCGTTGGCAAGAGCAACCTGCTCTCCCGCTTCACCAAGAACGAGTTCAACCACGACAGCCGCACCACCATCGGGGTGGAGTTCAGCACACGCACAATTCAACTGAAAAGTCTCATAATCAAGGCTCAAATCTGGGACACGGCTGGGCTGGAGCGGTACAGGGCCATCACCTCTGCTTATTATAGAGGAGCTGTTGGAGCGCTATTGGTCTATGACATCACCAAACATCTGACCTATGAGAGTGTGGAGCGCTGGCTTAAGGAGCTATATGACCATGCAGACCCTCACATCGTAGTCATGCTGGTGGGCAACAAAACTGATCTGGGGTCAGAGCGATCAGTGCCCACTGAGGATGCCAAGGACTTTGCAGAAAAGAATGGCCTATTGTTCTTAGAGACATCAGCCTTGGAGTCCACAAACGTTGAGACTGCATTCCAAAATGTCCTTGGAGAGATTCACAGGAAGGTGAGCAGTAAAGAAGTGACCCGGGGGTCCATTAGTGCCGTGTCTCTGGCCAGCCCCGTCCCCAGAGCTGCAGGCGACCCTGAAGAGAAGAAGCCCTGCTGTAGGAACCTCTGATGGGACAAACCACCCCCTCATGTGGAATAGAGCACTCCATCTTCCTCTAGTTAGTGTGCCCAAATGGTGCAAGCCTGATTGAAAAGAATGATGCTGAGCAAGACCACTCTGATGTGACATAGTTACATGTTGGCAGACAGAATGAGTTTTCCATTCCTAAAGATGATGTAATGTGTATGTACATGGCTGGGGGTACATTTCCCCCCCAAAGAATCCAGCAatcatttgaatataaaaatatatcAAACAGCATTTTTGTGTAAACTTCAAAAATTCAATGTTGCTTAGGATGATTTTATTTTTAAAGGTAGTCAACTGATGTACAGAATATTTGCATTTTTAGTGACTGAGGTTGGACAACAAGTGCCAAAACCACGTTTTTACACAAAGCTTGATTAATTAAATTTGCTGTCACTGTT

Function

NR:

description
PREDICTED: ras-related protein RABA2a isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07906 RAB25; Ras-related protein Rab-25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559423.2 True 1269 mRNA 0.46 5 33012367 33018172

Neighbor

gene id symbol gene type direction distance location
LOC110487493 LOC106580659 coding downstream 1409 33002129 ~ 33010958 (-)
LOC110487461 LOC106605311 coding downstream 43878 32939047 ~ 32968489 (-)
LOC110487437 LOC105030512 coding downstream 122982 32853454 ~ 32889385 (-)
LOC110487370 nes coding downstream 144156 32855765 ~ 32868211 (-)
LOC110487362 NA coding downstream 236846 32770410 ~ 32775521 (-)
LOC110487525 LOC106605242 coding upstream 2649 33020821 ~ 33027137 (-)
LOC110487583 LOC106605302 coding upstream 38833 33057005 ~ 33074880 (-)
LOC118936288 LOC106605301 coding upstream 57111 33075283 ~ 33080028 (-)
LOC110487585 LOC106605295 coding upstream 115966 33134138 ~ 33137978 (-)
LOC110487587 LOC106605297 coding upstream 126202 33144374 ~ 33173493 (-)
G134229 NA non-coding downstream 10450 32994377 ~ 33001917 (-)
G134253 NA non-coding downstream 30088 32981056 ~ 32982279 (-)
G134254 NA non-coding downstream 30479 32981436 ~ 32981888 (-)
G134182 NA non-coding downstream 120451 32891715 ~ 32891916 (-)
G134227 m4a8a non-coding upstream 13077 33031249 ~ 33049593 (-)
G134231 NA non-coding upstream 66763 33084935 ~ 33106505 (-)
G134361 NA non-coding upstream 212824 33230996 ~ 33231201 (-)
G134364 NA non-coding upstream 217793 33235965 ~ 33236189 (-)
G134102 NA other downstream 224246 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 260789 32738829 ~ 32756992 (-)
LOC110486999 prdm1 other downstream 1363572 31631886 ~ 31648795 (-)
G132197 NA other downstream 1469358 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 1813555 31196917 ~ 31199241 (-)
LOC110487618 LOC100380645 other upstream 194492 33208500 ~ 33225125 (-)
G134668 NA other upstream 847316 33865488 ~ 33865937 (-)
G135575 NA other upstream 1586043 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 2288195 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 2656126 35674291 ~ 35700846 (-)

Expression


Co-expression Network