LOC110487507 (LOC106580651)


Basic Information

Item Value
gene id LOC110487507
gene name LOC106580651
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33017135 ~ 33020297 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559432.2
CCATAATGCATTACGATTTGTATCAGGAAGTTGAAGGAGTCAGCTGACTGGATTGTGTTGTTGTAGAAGAAGTCACTGAATTGGATGATAAAATACACTTCATAATTTCGCCTAAATTAATTCAGTTGCTGCAAAGTATTGCTCACGCCAACCATGTTGCGGCCAAAAGCATTGACGCAAGTTCTCAGCCAGGCAAATACAAGCGGAGTACAAAGCACACTATTGTTAAATAATGAAGGGTCTCTTTTGGCTTACTCTGGCTATGGGGACACTGACGCTCGAGTGACCGCTGCCATTGCAAGCAACATCTGGTCGGCCTATGACAAGAACGGGCATCAAGCTTTTAACGAAGATAAACTGAAATTCATTCTGATGGATTGTATGGAAGGCAGGGTGGCCATCACACGGGTAGCTAACCTACTGCTGTGCATGTATGCCAAAGAGACAGTGGGCTTTGGAATGCTTAAAGCCAAGGCTGAAGCGTTGGTACTGTACCTGGAGGAACCTTTAACCCAAGTTGCTGCATCATAGGGGAAGTCTGGCTGGAGTGTTGTCTTCAATTTTGTCTCCCGTGATAATACATGAACACTTGTTGCTTATGTGAATGCTTCACCTGGTCTTCATGAAATGCTGCAGTCTGTGTATGAATGAACTGAGTATTTGTCTTCTGATTACTGTATTTATACTCCGTATGCTCTAACTTAATGCTTGAGTTTAGTAGTTTGGCCGTTTGTGGCATGCAGTTCAAATGTCAAGTTCGCACATTGTGTAAGGCGGGCTATGTAAATCTTCAATGAATTTCACTGCCTGTAAGAGGACTCCTTTCTCAACTGCTGAAAATGCTGACACATTAACTTTAAGGCATTTGCTGTTTACCCTAGTCAGAATATTACATTTGTCTGTTGTTGCCATGCAATAACCTTTATGATATCCTTTTGTAACAGGCTATCCATAAACTGTTTTTTTTCAATGAAAAATCAATATGTATTTGTCTTCAAAGATATGAAATACATAAAACCATTTGATTCATATGTTAGATTTTTAGTTCCAGGGATACCAAGGAGTTTTTTGCAGAACTGACGTTACAGGTTTGCTGAACAGACCTAATATTGCATTACCTTGTCAGTTGTTTGACAGTATTGTTATTACTGATATATATTTGTGTTTGTCAATTCAGAACTTTATCAATACTGTTTCTAGGTCCCTTTTGCTGTTActttgtgttcctggtttgagatGAACAGAACCAGGGGTTTATTCATTAGTTGCAtaccgtagcaaaacgttttgcaataaATTAGGTTCTATTTGACAGGTAGGTCCTGTGAATACACCTCAGAGGAAGCAATGGTTGTCTTTCGCCATGTAAAAGGGATAGGGAAACAGTAATTTCCTGAAGGCAATCATTTGGTTTGTCCAGCAGGTGGCATGTATCTATTTTTTTTCACACAGTTGCTCATGTGGTTGTCCTACCTGTTCAACCTGCCATAGACTTACACCAAGCCACTCCCCCAACCCCCATCATTCCTCAGCAGAACTACCTGATGACACAGCGGAGCAAGTTCCTTGTAAACAATCTAGGTTTCTATTAAACGTAGAGGGGGACAGGTGACTTGCAAAGTGTTTGTGCGGCTCTTTTAAATCTGAAGATTAGGGTGAGTGGCTTCTGGGGAAGTGTCATCTTTCCTTTCTCCCCTCACACTCTTGAGAGCTGGACCACTGAAGGTGTACCTCATGGGTTCAGATGAGGCCTACAACTTTGTCTTTAAGGGTGAGTCCATGTTCTTTCACATTTAACAGATTGATGTCCTACATTTACATAATGTAGCACACACTCTTATTCAGTAGTGATTGCATACATGTTCAGACTTTTTTGCTTACTGGTCTTTTATGGGAATTGAaatcacaaccctggtgttgcaagtgccatgctctactaactgagccaccATGATGATACAATGTATATGTCAACTACTTTTTTTGTAGTTAGAGCTAGTGCAGTGTTGCTCACTACAGACAACCATTGAATTATGTTACTTGGTGTGTGTGCTAAGGCTAGAAGCTAAGTGCCAGCACAGTATCAAAAGCACACCGTAGATTGTTAGTAACACATCTACCACCCAGAAATGATGCAGGTCACTCCCACCTGTGTTGAAATTACAGAAAAAGTCTAGGGTGTGTCCTGAAACAAGGCAAGTTGCCTTGCATAGTGCATACACTCAAGAAATATTGCCAATTATGTTTACGCCAGTCCTGTAGTACAgggcgtctcagagtaggagtactgatctaggatctgtttaGCATGTTAGGTCATGATGAATATGACTGTAtgaacagatcctagatcagcattcatACTCTTAGACGCTTTGTGGATACGAGCCCAGGTCTAGGAGTTTTATCCATTACTTTTAAGAATGCATCTAACCTTGAGGTTCATTAATATGCTACTGTTGGTATTTTACAAGTCAAGACAGTGCTACTTCAAGAATGTTGCTATTTCTATGAACTTGAATGCTATTTCTGTATGTAACTGAATACATTCTTGACCT

Function

NR:

description
PREDICTED: ragulator complex protein LAMTOR2

GO:

id name namespace
GO:0043087 regulation of GTPase activity biological_process
GO:0034613 cellular protein localization biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0032008 positive regulation of TOR signaling biological_process
GO:0016049 cell growth biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0071986 Ragulator complex cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
K20398 LAMTOR2; ragulator complex protein LAMTOR2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559432.2 True 2558 mRNA 0.41 4 33017135 33020297

Neighbor

gene id symbol gene type direction distance location
LOC110487493 LOC106580659 coding downstream 6177 33002129 ~ 33010958 (-)
LOC110487461 LOC106605311 coding downstream 48646 32939047 ~ 32968489 (-)
LOC110487437 LOC105030512 coding downstream 127750 32853454 ~ 32889385 (-)
LOC110487370 nes coding downstream 148924 32855765 ~ 32868211 (-)
LOC110487362 NA coding downstream 241614 32770410 ~ 32775521 (-)
LOC110487525 LOC106605242 coding upstream 524 33020821 ~ 33027137 (-)
LOC110487583 LOC106605302 coding upstream 36708 33057005 ~ 33074880 (-)
LOC118936288 LOC106605301 coding upstream 54986 33075283 ~ 33080028 (-)
LOC110487585 LOC106605295 coding upstream 113841 33134138 ~ 33137978 (-)
LOC110487587 LOC106605297 coding upstream 124077 33144374 ~ 33173493 (-)
G134229 NA non-coding downstream 15218 32994377 ~ 33001917 (-)
G134253 NA non-coding downstream 34856 32981056 ~ 32982279 (-)
G134254 NA non-coding downstream 35247 32981436 ~ 32981888 (-)
G134182 NA non-coding downstream 125219 32891715 ~ 32891916 (-)
G134227 m4a8a non-coding upstream 10952 33031249 ~ 33049593 (-)
G134231 NA non-coding upstream 64638 33084935 ~ 33106505 (-)
G134361 NA non-coding upstream 210699 33230996 ~ 33231201 (-)
G134364 NA non-coding upstream 215668 33235965 ~ 33236189 (-)
G134102 NA other downstream 229014 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 265557 32738829 ~ 32756992 (-)
LOC110486999 prdm1 other downstream 1368340 31631886 ~ 31648795 (-)
G132197 NA other downstream 1474126 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 1818323 31196917 ~ 31199241 (-)
LOC110487618 LOC100380645 other upstream 192367 33208500 ~ 33225125 (-)
G134668 NA other upstream 845191 33865488 ~ 33865937 (-)
G135575 NA other upstream 1583918 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 2286070 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 2654001 35674291 ~ 35700846 (-)

Expression


Co-expression Network