LOC110487525 (LOC106605242)


Basic Information

Item Value
gene id LOC110487525
gene name LOC106605242
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33020821 ~ 33027137 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559445.2
cgaTATGAAGTCGTTTTTTTTCAAAGATGCCGAAATGCCACGTCCGTACaccattacgaaacttctattgATAAAATAATCCCCCACATAGCAAATAAAATATACAACATTTTGTTAACCAAATTTGAACCTCAATGACCATACAAATGAATCGTATTTTCGTGGACATATTTTGGGCTGAGTAAAACCTctcgcttcacctcttcctctctggatgTAGTGAATTTGAAGAGGTGTAAAGATGGCGGAGAACAGCGGCACAGATCCCACTGTGGATTCCAACGTCGTTGAAAATGCTGCCTCAGACGGGACCATGATCGTGGTCACGGTAAAAACTCCGAAAGATAAAGAGGAGATAGCGATCTCGGAGGATTCTTCTGTCGCACAGTTTAAAGAGGAGATATCCAAAAGGTTTAATGCCAAGAAGGACCAGCTGGTGTTGATTTTTGCTGGCAAAATCTTAAAGGATGGAGACACACTGAACCAACACGGCATCAAGGACGGACTCACTGTTCACCTTGTCATCAAGACTGCTCCCAAGACCACAGTTGGTGGCACATCCCAGTCCTCTGCATCCAGCTCTGGGACCCCCCAGGCCGAAAGCAGCATCAATCCTAGCGCAGTGCCCAATGCCAGCACAACACCAGGCACTGGGCCTACCCCAGCCTCCACACAGCCACCCAACTTACTCAGTGGGTTTGGTGACCTATCTAGCCTGTCAGGCATGGGCATGGGCTCAGCCAACTTCATGGAGATGCAGCAGCAGATGCAGAGACAGCTGATGTCCAACCCGGAGATGCTGTCTCAGATCATGGACAACCCTCTGGTGCAGAACATGATGTCTAACCCAGACCTGATGAGGCAGATGATTGTGACCAACCCTCAGATGCAGCAGCTGATGGAGCGTAACCCTGAGATCTCCCACATGCTCAACAATCCTGAACTTATGAGACAGACCATGGAGTTGGCAAGGAACCCAGCCATGATGCAAGAGATGATGCGTAACCAGGACCGGGCGCTTAGCAACCTGGAGAGCATTCCTGGGGGATACAACGCCCTCCGGAGGATGTACACAGACATCCAGGAGCCTATGTTCAGTGCCGCTAGAGAGCAGTTTGGAAACAATCCTTTCTCTGCTTTGGGGGGCAACTTAGACTCTGGCGTGCAGCCCTCcagaacagagaacagggaaCCCTTACCAAACCCATGGGGACCCCCTGGAACGTCCCCCTCAGAAAGCAGGGGGACTGGCGCCTCCACAACAACAACCTCCTCTGCTGGCGGGACTGCACCCAGTGCCTCCAACCCCCTGGGCATCAACACCTCTGGGCTGGGCAATGGTGTATTCGGTAGCCCTGGCATGCAGAGTCTGATGCAGCAGATCTCTGAGAACCCCCAGCTCATGCAGAACATGCTGTCTGCGCCCTACATGCGCAGTATGATGCAGTCGCTGGCGCAGAACCCTGAACTCGCCTCGCAGGCAATGCTGAACAACCCCCTCTTTGCCggaaacacacagttacaggAACAGTTGAGACATCAGATGCCGGTCTTTCTCCAACAGATGCAGAATCCTGAGTCACTGTCTGTGATGACTAACCCCCGGGCCATGCAGGCTCTCATGCAGATCCAGCAGGGCCTGCAGACCCTACAGACAGAAGCCCCCGGGCTCATGCCCAGTTTGGCTCCTGGTGAGATCCCAGTGATTCCTCCAACCACAGGAGGCAGTGTGGCCCCAGAAAACCTTCCTCCCCCAACACAGGGCTCAAATCCCACCGCTGCCACTAACCCAtcccagcaacagcagcagctcaTGCAGCAGATGTTACAGATGTTTGCTGGGGGAGGAGGCGGCTCATTGACTCTAACCCCGGAGGTGCGGTTTCAGCAGCAACTGGACCAGCTCAGCGCCATGGGCTTCATCAACCGCGAGGCCAACCTGCAGGCCCTCATCGCCACGGGGGGAGACATCAATGCTGCCATTGAGAGACTGCTGGGCTCCCAGCCCTCCTAACTCCCTTAGCCCCTTGAGATTACCGGGAGAGAAGGGTTAGGGAGGGGGGGTACTGGAGTGGGAGATGACAAATGAACACAGTCCATCACAGTCTGACAAGCCCCTCAGATAGACTCAATTGAATTCCAATTACTATTCATCTCTTTGGCTGATCTGTGAATCGTAGGAAAGATATGGGGGCAGGAAGTGGGTGTTCAGATTCAAGTTTCTATTGGAGAGACCTCATATCAACCCTGTGGAATGATGACATCGCTGCAAAATGACGCCACCACTAACATGACTACTTCCTCTGTTGACTATGGGAGACTCTTTCTGAAATGACTGTGCCCATTTGCTGGAAATGCATGAGGTTGCCAACTTAACCCATATTAATGGATTGTGTTTAGCTGGTAACAAGTTGAAATTTGGAGGGATGTGAGTGTTGAAATCATAGAATGAGGGATTCCTCTGACCTTTTATTTTCATGAGAGCCTGCTTGTTTTTACTTAATTTCACTCTATCATGCCTGATTGGCTAGTATTTATTATAGGAGCTGTAGAAGTTACCTTCTCTTTTCTTTACCACTCACCTTCAGTTTACCTTCTGCTTTAAGAATTTCTTGACATTTTGATGTGTTCCTTCAAAACTGATACAGGCTGTTGGACTCTCTGTTTGAGCACTATAGCGCCCCTGGTTCAGCTGTTTGCTTACACTTTCAGGTTTTTTGGAAGGGATGATTTTCAGATTGGAAGGTCAAGCAAGGTAGCTTGGTTAGCTCTGGAGTTAATGCTTCATTGAGTCAATGAATGCTATTGAGTGTAAATTCTTCAACAGTTTAGGCTCTGGTTAAGTGATCAGACCTCAATGTTTTTAATCTGAGCAATGATAAAAATGCAGACACCTTTTACGTTAACCATTTTGTGTATTTTCATACAAGCAGTGGTGTAGTGCCTgataaaaatgtatgtattggTTTCAGCAATATATTCCAAAATAATTTGTTGaatctataatgacaaagtgtacTAATGGCATAGAGAATTATTTTTCTTAAACCCATACATATTAGTTGCAGTACCTACAGTTAAAGAAAATCTGTTCAGCTCTGCCTTTTCTTGGAGTCCCTTCACTCTGTTATCTATTCTAATAATACCTTTCAAGAAATGTGCTCAAGTGTGGTGGTGATTCATTTAGTTCAAAAGCATGGTCTACACTAGTAGTCTAGTAGTCTTCACTCCTGATCCTGGAGGGATGTACCCTATGCTGAATTCAGATGATCAATCCTTCTCAAAATGCACACTTGTTCATCACACCTCAGATTTAAAAGCACTAGACTGGACTGCAGTGAGAAATGTGGTGGAAACTCCATTTAGCCCAAGCTTACGCCAATCCGCACCCTTTTGGCAAAGTAAAATTGAAATTGAGTGCAAGCCCAGCACAAACACATCTGATTCAGCTTTTCATGATCTTGATGAGTAGTTGGTGTTGTAGACTTAGCCTGTTCACACTGACTGCAACCCTCTAGGACCAGGTGTGTGATTAACACTAGTCTacattgtctatgttgattgatATTGATATGAAATTACATGAACTTGATATGGATGATTTGTTCAACGTGTACGGGATTTGTTGTGTGTAGTCTGAGAGGTGGGAAAGTTAGTGGTGACCATGCATATTTGGTAGCTCATTAAAGGACCAAGCTTGAAAATCTAAATTGTGAACTGTAATAAACATTTAAGTATCTTAATGGAAATTAAGCTGTTTTAACATTCA

Function

NR:

description
ubiquilin-4-like

GO: NA

KEGG:

id description
K04523 UBQLN, DSK2; ubiquilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559445.2 True 3769 mRNA 0.47 11 33020821 33027137

Neighbor

gene id symbol gene type direction distance location
LOC110487507 LOC106580651 coding downstream 524 33017135 ~ 33020297 (-)
LOC110487486 raa2a coding downstream 2649 33012367 ~ 33018172 (-)
LOC110487493 LOC106580659 coding downstream 9863 33002129 ~ 33010958 (-)
LOC110487461 LOC106605311 coding downstream 52332 32939047 ~ 32968489 (-)
LOC110487437 LOC105030512 coding downstream 131436 32853454 ~ 32889385 (-)
LOC110487583 LOC106605302 coding upstream 29868 33057005 ~ 33074880 (-)
LOC118936288 LOC106605301 coding upstream 48146 33075283 ~ 33080028 (-)
LOC110487585 LOC106605295 coding upstream 107001 33134138 ~ 33137978 (-)
LOC110487587 LOC106605297 coding upstream 117237 33144374 ~ 33173493 (-)
LOC110487594 LOC106605294 coding upstream 137841 33164978 ~ 33172969 (-)
G134229 NA non-coding downstream 18904 32994377 ~ 33001917 (-)
G134253 NA non-coding downstream 38542 32981056 ~ 32982279 (-)
G134254 NA non-coding downstream 38933 32981436 ~ 32981888 (-)
G134182 NA non-coding downstream 128905 32891715 ~ 32891916 (-)
G134227 m4a8a non-coding upstream 4112 33031249 ~ 33049593 (-)
G134231 NA non-coding upstream 57798 33084935 ~ 33106505 (-)
G134361 NA non-coding upstream 203859 33230996 ~ 33231201 (-)
G134364 NA non-coding upstream 208828 33235965 ~ 33236189 (-)
G134102 NA other downstream 232700 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 269243 32738829 ~ 32756992 (-)
LOC110486999 prdm1 other downstream 1372026 31631886 ~ 31648795 (-)
G132197 NA other downstream 1477812 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 1822009 31196917 ~ 31199241 (-)
LOC110487618 LOC100380645 other upstream 185527 33208500 ~ 33225125 (-)
G134668 NA other upstream 838351 33865488 ~ 33865937 (-)
G135575 NA other upstream 1577078 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 2279230 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 2647161 35674291 ~ 35700846 (-)

Expression


Co-expression Network