LOC110487587 (LOC106605297)


Basic Information

Item Value
gene id LOC110487587
gene name LOC106605297
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33144374 ~ 33173493 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559504.2
GGATTTCTGGGAAGAAGAAGGAGGCTATCGAGGTTGGgactttggagagagagaggtatagagagaggcaCTTTGTAAAGGCGTCACATCGATCAGAGCCCGAAGTCGCAGTCCAGGAGCTTGTCAAACCCTCCAACaCTCCTGTCTCTCAATCAGAAGCTACCATCCTCCCCAACCCTTTCAAGCACTACCTGGTTTGGACTTCTGTGTCGTGAACCCCTGCTTGCCATCATGTCGGAGATGGAGATCGTGGAGGACCGGGCCAAGCTGAAACAGGGCCTGGTGAAGGTGCTGCAGTGTGTGGCCACCATCTCATCTGCTGCGGCTGTGGTCAACCCCATTTTTGGCGTGGCCGGCTCTCTAATCCGAGTGGTGCTGCACCATGTGGACGATGAGGACATCCAGACACTGAAGCGCGAGTTTGGCTCTGTCAACCGTGCCCTGGACCAGCTGTCCCAGCAGAACCGCGGCGCCCTGCTACAGATCAAGAAGGAGACGCTGGACGGCCAGTACTGCTGTGTGGAGGAAAACCTGCGCAACCAGTTCCGCAAGTTTATGGAGATGGTGGAGGCACGGCCTGAGCACTGTGAGCGCAAGAAGGTCGACTTTGAGGAGAGCTACTCCAACGACCTAGGCGACCAGAACCTGCACACACTCTACGAGGGTGTGGTGGGCAAGCCCAAGCTGTTCAGCCGGCCCATCCTGGAGGTGTACCTGAAGCACTCGCAGGGCGACCGCCGCACCATGGAGAACCTGTGCACGCGCCTCACATACCTCTTCTGCATCGGCCTGATCGCCCTCATGGGTTACGCCGCTGTCATCGGAGACGACGAGGAGGGCATCAGCGACGAGTGGACCGAGAAGATGGAGCACGTGCAGGAGAGGATGCAGGAGGCCCTCCAGAAATGCAagtgaagagaaggagaaggaggtgtAGAGGCTGCTACTTGTCCTCCATACACAGGACTCTCTCCACATTCCCtctaggaccccccccccccccattccataTGCTCAGTTCAGGCCATTATAATGAGCCCTTCTCCCCTCATCAGCTTCATGTGATGTGGATTCATTATTCTTTAATGATCACATGGCTATTCACAGTTGGTATCTATGAGTTAGAGGTAAGTAAATTGAATGAAAACAGTCAGTGATTTGCCTCATCCACagcagtagtcaatgaacagacCTATATAATATACGTGAATGTTGATATGGAAACCTGCATACACAGCGGCCTGACGATCAACATTTGGACTGGCTCTCAATTAGATTTAACTATGCCATTCCTATCTTCTAAAGAGTAAGATGGAGTGGTTTTAATGTCTGACAATACTCAGCACTTTCGAAAAAATATATTCTCTTGCTGGTATTTGCTGGTGATttagagggagacacagagaacaggctcattctgttgcGTGAATGTAAGATTCACCATAATGGGTATCTATTTGAACAGATATATATACTCCATGCAATTCTAATAGCGCCACTGATGCAACCTAGCActttcagtaaaaaaaaacatgatctaTACTGTGGACACTATTAACATAGCATGCCAATTGcctaaatacaaaaacaattgaCTTTACAGTGGGTTAATTAGTATTACTTTACTAATTACTGTAGGTAATTTGTAACCATATATCTGCAGCTAAATTGACTGTTATTTAGCATTTAATTGGAGATAGCATAAAAAAACTATTGATAAATTatgcacacccccccccccacacacacacacatacacaacactaGCATTATATTGCTTCCATAATTATTCAACAAAAACACTAGACTGTCTGTCAAAGCGCTTTGGCCCGGATAATGAAGTCAGTGGAATGATAATCATACTGTAACTAACACTAAACACTTGTAGCCTGTTTTAATTTAATACCAAAACTGGCCTACTATACTGTCCAAAAACACTACTGTTTCCTTTTCAACCATATTGtttggtgtttgtttgttttcatgaACCCACTATGGTGGGTGTGATGTAAGCCAACCAAGTGCAGTTACTACACTAAACTATACGTGACAACTAATCGCACAACAATACAAAAGGTCAAAGTATACATTAGCTTTAAGTGCTTTCTCTCTTATGGGTTTTCTTGTATCACAGATCAATTAAGTATTAGcaaaaatgtttgtttgtttttaccaaGGTTGCGttcataaattcactctggcCATCTACtacgatttcagagcactctcgtctgagtgtgtcGTCAGATTAATTTTCGAACAcgcaacacccattgaatatgaccTGTGTCAATAAACATCTGcaaagaaaatatatttaaattgttgccagcagcacagttagtcaccaacactCTACACAACacgagtgaggtgttctctcatttgtgtcttgaagtagctagcaagctagccaactttagccagttatcttaggtgcttgactgccgttgtgaggtcagaacgctcagatcaaccctatTCCCCGGCCAGAGCGTCCATTGTGCCCTCTAAACGTTCAAAGAGCGAAAGGCTCTGAATATACAAATTGAGAATCTGACAACACTCAAAATATATGAAGGCGCAAATTACGAACACACCCTAAATAATTTGATTTCTGGGGAATTATCTTTGCTCTGTGACCCCCTTTCTTTTCACTTAATCTATtatattattttcatattttgaAGCAATTTACACCACAATTAATGTaagagatattttttttttactcaaataCATTATGGTGATGTTTTGTAGATGTTTTCGGGATTTTATACATCTTAAATGGCCATAGTAGTTTTTATTTAGATAAGAATCCTCTCATAACTGACCAACAGTGTCTCTTACACTGTGGTCCATGTTCCGTGTCCCCTTACTGTGTCTTGCCTAAGAAAGGGTTCACAAAGTTATGTTTCCTGTTCTTTACTTAATTTGTTCTTGTGCTCTAAAGGACTGCTGTTTGATTTGATCTCTTTCTTCTGTGCTATAAACCCCACTACTCAGATTTCCAGTGTTACTGATGTCTATACTCACAGATCCAAGAGAGCTCTCCATATCTGTGATTCATAACCCTATATTCAATGGAATGGCTTTTCTGTGGTACCAGTCCCTGTCTCTCATGTTGTTACAACTGAGATGTATGGCTGTTAAATAGTTATAATTCTGTACTGTTAAAATTAATAGATGGGAATATATTTACCACTTTATGGCTTTCTGAAAATATATGCTCCTCATCTAAACTTCATAGCCTATTTTTTGTTATGTTCTTTGTTGGCTGGTTGTACTATGCAGCACTATCAATAAAGATTGAATGTAAAATA
>TU154639
TCCCTTATGTCCATATTATTTGCTGTATACTACCATCATGTGGAGCAAAGCTGCTACTGCAAGTTGGCCCTTTTATTTCAACATTTGCactctctatgcacactcacagagcccaacacacacacacacacacacacacacacacacacatacacaacactaGCATTATATTGCTTCCATAATTATTCAACAAAAACACTAGACTGTCTGTCAAAGCGCTTTGGCCCGGATAATGAAGTCAGTGGAATGATAATCATACTGTAACTAACACTAAACACTTGTAGCCTGTTTTAATTTAATACCAAAACTGGCCTACTATACTGTCCAAAAACACTACTGTTTCCTTTTCAACCATATTGtttggtgtttgtttgttttcatgaACCCACTATGGTGGGTGTGATGTAAGCCAACCAAGTGCAGTTACTACACTAAACTATACGTGACAACTAATCGCACAACAATACAAAAGGTCAAAGTATACATTAGCTTTAAGTGCTTTCTCTCTTATGGGTTTTCTTGTATCACAGATCAATTAAGTATTAGcaaaaatgtttgtttgtttttaccaaGGTTGCGttcataaattcactctggcCATCTACtacgatttcagagcactctcgtctgagtgtgtcGTCAGATTAATTTTCGAACAcgcaacacccattgaatatgaccTGTGTCAATAAACATCTGcaaagaaaatatatttaaattgttgccagcagcacagttagtcaccaacactCTACACAACacgagtgaggtgttctctcatttgtgtcttgaagtagctagcaagctagccaactttagccagttatcttaggtgcttgactgccgttgtgaggtcagaacgctcagatcaaccctatTCCCCGGCCAGAGCGTCCATTGTGCCCTCTAAACGTTCAAAGAGCGAAAGGCTCTGAATATACAAATTGAGAATCTGACAACACTCAAAATATATGAAGGCGCAAATTACGAACACACCCTAAATAATTTGATTTCTGGGGAATTATCTTTGCTCTGTGACCCCCTTTCTTTTCACTTAATCTATtatattattttcatattttgaAGCAATTTACACCACAATTAATGTaagagatattttttttttactcaaataCATTATGGTGATGTTTTGTAGATGTTTTCGGGATTTTATACATCTTAAATGGCCATAGTAGTTTTTATTTAGATAAGAATCCTCTCATAACTGACCAACAGTGTCTCTTACACTGTGGTCCATGTTCCGTGTCCCCTTACTGTGTCTTGCCTAAGAAAGGGTTCACAAAGTTATGTTTCCTGTTCTTTACTTAATTTGTTCTTGTGCTCTAAAGGACTGCTGTTTGATTTGATCTCTTTCTTCTGTGCTATAAACCCCACTACTCAGATTTCCAGTGTTACTGATGTCTATACTCACAGATCCAAGAGAGCTCTCCATATCTGTGATTCATAACCCTATATTCAATGGAATGGCTTTTCTGTGGTACCAGTCCCTGTCTCTCATGTTGTTACAACTGAGATGTATGGCTGTTAAATAGTTATAATTCTGTACTGTTAAAATTAATAGATGGGAATATATTTACCACTTTATGGCTTTCTGAAAATATATGCTCCTCATCTAAACTTCATAGCCTATTTTTTGTTATGTTCTTTGTTGGCTGGTTGTACTATGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559504.2 False 3323 mRNA 0.43 3 33144374 33155609
TU154639 True 1690 lncRNA 0.37 2 33144403 33173493

Neighbor

gene id symbol gene type direction distance location
LOC110487585 LOC106605295 coding downstream 6396 33134138 ~ 33137978 (-)
LOC118936288 LOC106605301 coding downstream 64346 33075283 ~ 33080028 (-)
LOC110487583 LOC106605302 coding downstream 69494 33057005 ~ 33074880 (-)
LOC110487525 LOC106605242 coding downstream 117237 33020821 ~ 33027137 (-)
LOC110487507 LOC106580651 coding downstream 124077 33017135 ~ 33020297 (-)
LOC110487594 LOC106605294 coding upstream 9369 33164978 ~ 33172969 (-)
LOC110487618 LOC100380645 coding upstream 52891 33208500 ~ 33225125 (-)
bola1 bola1 coding upstream 98947 33254556 ~ 33256182 (-)
sv2a LOC106605292 coding upstream 100865 33256474 ~ 33313903 (-)
LOC110534759 LOC106605290 coding upstream 171403 33327012 ~ 33357457 (-)
G134231 NA non-coding downstream 37869 33084935 ~ 33106505 (-)
G134227 m4a8a non-coding downstream 94781 33031249 ~ 33049593 (-)
G134229 NA non-coding downstream 142457 32994377 ~ 33001917 (-)
G134253 NA non-coding downstream 162095 32981056 ~ 32982279 (-)
G134361 NA non-coding upstream 75387 33230996 ~ 33231201 (-)
G134364 NA non-coding upstream 80356 33235965 ~ 33236189 (-)
G134367 NA non-coding upstream 94311 33249920 ~ 33250188 (-)
G134369 NA non-coding upstream 97604 33253213 ~ 33253422 (-)
G134379 NA non-coding upstream 131130 33286739 ~ 33287261 (-)
G134102 NA other downstream 356253 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 392796 32738829 ~ 32756992 (-)
LOC110486999 prdm1 other downstream 1495579 31631886 ~ 31648795 (-)
G132197 NA other downstream 1601365 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 1945562 31196917 ~ 31199241 (-)
G134668 NA other upstream 709879 33865488 ~ 33865937 (-)
G135575 NA other upstream 1448606 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 2150758 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 2518689 35674291 ~ 35700846 (-)
LOC110487659 LOC106605289 coding upstream 185666 33359159 ~ 33391810 (-)
G134254 NA non-coding downstream 162515 32981436 ~ 32981888 (-)

Expression


Co-expression Network