LOC110487618 (LOC100380645)


Basic Information

Item Value
gene id LOC110487618
gene name LOC100380645
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33208500 ~ 33225125 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559540.2
CTAACTATGATTCTCAGAGATGGGACAGGCTGCCGACGGGTGAAGTACATGATTGGCAAAGATATCTGCTTGTAAATATACTGCATCTACCACAGAGCACTCCATCCATGGTTAATCGTCATTTCTATTCAGTCCTCATCGTGGCGCACAACATTAGAGGAACGAAAGCAacttttattttggtattgcACGTCCGTATGAGTTCACAAGACAACTTCGATCACATAATTGCGTAGAACTATGGTCAGTATTGTTCTTTTGTGATTGAGAGAAGATGTTGATTTAGTTCAGTTCGATTATTAAGCAGAATAAGATTCGAAGCAGTCAATATTCATGAACATGACACTTTAACGACCACTTCTCCATTCTGTACATGCTGTTGGTCGACTTTTCAAAAACACGAAGTTTTTGAGAGAGCGTGTTTATGGATTTCTCCCGAGAGGAGAACACTGGCAGTAGGCTCCATTCTTACGAAATAGTCATGTTGATACCGTGCTGTCTTCGTAAACTTTGATAGAAGTTTACAGACGATACGTTTACGACAGGGACATTTGATTAACGAATTAAGAACATCTATTTGAGAATATATTAAATACTTTTTGGAGGAAGTGGGAAGCGCCTTTTCGCTCTGCCTTGTTTTCCCAAGACGTCAGAACGGATTCTTATCTCCTCCCCGCGCTACGGAGTTGGACTTGTATCTGTTGTTTAACCAACGTGTTTTAGGATAGCATGGCAATGGTAGTAAACCAGTGGCAAGAGAACATTTCGGCGGATCCCGGGTCCCAGCTCCAGATTTGCAGTCAGGAGCCTGGCGGGACACCGGGAACCCCCTCTGGTTCCACCCCGGGGAACGATGCACTTTCCGGGGACAAGATCCCCAACGTGGACTGCATGGTGTGCGGGGATAAGTCCAGTGGCAAGCATTACGGCCAATTCACCTGCGAGGGCTGTAAAAGCTTCTTCAAACGTTCGGTGCGACGGAACCTCAGTTACACATGTCGGGGGAACCGGGACTGTCCCATCGACCAACATCATCGAAACCAGTGCCAGTACTGCCGACTGAAGAAGTGCCTCAAAGTCGGTATGAGAAGAGAAGctgtCCAGAGAGGCCGCATGTCCAACTCCCAGTCTAGCCCGGGTCAGTACCTGACCAATGGCAGCGACCCTTACAATGGGCAGCCCTACCTATCAGGATTCATCTCTCTGCTGCTGCGCGCCGAGCCCTACCCCACATCCCGCTACGGGTCCCAGTGCATGCAGGGAAACAATTTGATGGGCATCGAGAACATCTGCGAGCTGGCCGCACGGCTGCTCTTCAGCGCTGTGGAGTGGGCCAAGAACATCCCCTTCTTCCCTGACCTTCAGCTCATGGACCAGGTGGCGCTCCTGCGCATGTCATGGAGTGAGCTGTTTGTGCTGAACGCGGCCCAGTGCTCCATGCCGCTGCACGTGGCGCCCCTGCTGGCGGCGGCTGGCCTGCACGCATCGCCCATGTCTGCGGAGCGCGTGGTGGCGTTCATGGACCACATCCGGGTGTTCCAGGAGCAGGTGGAGAAACTGAAGGTTCTGCAGGTGGACACGGCTGAGTACTCCTGCCTCAAATCCATCGTGCTCTTCACTTCCGATGCCATGGGCCTGTCGGATGTGGCCCACGTGGAGAGCATCCAGGAGAAGTCCCAGTGTGCCCTGGAGGAATATGTGAGGAACCAGtaccccagccagcccaaccgcTTCGGCCGCCTGCTCCTGCGGCTGCCCTCCCTCCGCATCGTCTCCTCGCCCGTCATCGAGCAACTCTTCTTTGTGCGCCTGGTGGGCAAGACGCCCATCGAGACGCTGCTGCGCGACATGCTCCTCTCCGGCTCCAGCTACAACTGGCCCTACATGCCCGTGCAGCGCGACCGCCCCATCTCCCTCCACTACAATGAGAACGGGCCCTGAGGAAGACGAGTCGCTGCGTATTCAGCTCTTCATCCAGCCTTCATCGACCATCCCTCAATCCCTCTGTTtatctcctccatccatcccctggAAGACCACCACCGTTCCAGCAAAAAGCAGACCGATCACCTGACTATCTCACCACTCCCCTCCCCCATTCACCAATCCAGCCATTCACACGCCTCTTCTCCAGGGGACCACAGCCAATAGAGAGACTTGGTGGCTGCCATGGCCCCTCCTACTTCGCCAACGCCACGTTTGTGAGGTGGCACTAGACGGGCCGGTTGGCAGAAGGGTTTTTCTCCTGCAGCTCTGTAGGACTCACGCCGTTAAAGGCAATTTTGTCAGTCTTGGACTCGAAGCGGTTGCGGCTACTGGCGACGCAGTCATTGTATTGTTGGCACTGTGCTTGCATCTAAAGGACACGTGTCCAAGAATCTCCACTGTCTGGCGATTTAGAGCAAGGCCTTTGCCGATAGAACTGCTTGACCGAGAGAGCCAGGCCAAAGGTTCTTCATCAACCAATTATTTTTTAATAAACCAGAAGCCATTAAAAAATGAATGCCAAATTTCCTTGGAATTTTCAGAAGACATttattgtgcgtgtgtgtgtgtattagcacTGTTTATAATGAGAGaaattcatgattgtgtccataTGTATGTCATTGACTCATAGACATCCACGTTAAGGGGTATGTTGAGACTAGCTCAGGTTCAGGatggggagacaggacagacaggacagacatgcCACTAGGAAACAGAGAATCACGCCTCACCCAGGGCAAAATACCTATCAACAGCCTGTATCAAAGTGGAACATGGATATTAATTGTCTTTGTGGTAGTGGTGACAAAAATACCTTTTGTTTTGTCTATAATTTGATGTCAGAGGGTGTGGGAAgttgcaaataaaaaaaataaaaataggcaCTTGCAATGTGAAACTATCCAGAACCCACACTCGACCTACTCCCATCATACACACAGCACTGGTAGATTCTTCCTCAGCTGCCATTTTGAGGTCAAAACTACAGGGCCACTAACTGGTAATGGTCAGTGTACTTCTGCCACTGTTTCAAAGCGGAATATCATACAAGTATCCCTTCATAACATCTACATAATGCTGTCATAGAAATGACATGACACATGCCAGTTAATGCCAGTTAGTTTCATGTCACAATCACATTTGATGTTTTTGTGGAAAATGTAAATTGTTATGGAGCCTGGATCAATACGCATTTGAAAACTCTAGTTGTACTTGCCTTAGAACAAGATTTTGTCACTGAGCATTTATTTTATGACTGTGCCATAATCTGAAGTTACCTGTTATGACAGGCAATATGTCCTCCACATGACATTGTCATGTAGGGGTAGAGACCACCTCAATTCAATTGTCATTCAAGCAGCATACTAGGACATTGTATCACTAACCTCCAAACCTCCATTAAAGTTACAATGGTCATCTACTGTGATGTAGCATAGATATTATTATGCGTTTGAGTTACCATCAATTGATGACGGGCTGTAAGGCAACACTGATTGTTGGACGACCAGTCTGTTTTTTAACGTGGCACTGTGGTATCAGCAACAATTATTGGGATTTGAAAGCCATTGGGACCTTGGAGAGCAGGACTGTCTGTTGATGAATTAGTTCACAGAATATTTCTATAAGAgtatgtttttttctctctattTTTTTGTTTGGAAATTATGGATCCATTAATTGAAATAAACATATGTTGTTCACAGTTA
>XM_036946288.1
TCTAACTATGATTCTCAGAGATGGGACAGGCTGCCGACGGGTGAAGTACATGATTGGCAAAGATATCTGCTTGTAAATATACTGCATCTACCACAGAGCACTCCATCCATGGTTAATCGTCATTTCTATTCAGTCCTCATCGTGGCGCACAACATTAGAGGAACGAAAGCAacttttattttggtattgcACGTCCGTATGAGTTCACAAGACAACTTCGATCACATAATTGCGTAGAACTATGctgtCCAGAGAGGCCGCATGTCCAACTCCCAGTCTAGCCCGGGTCAGTACCTGACCAATGGCAGCGACCCTTACAATGGGCAGCCCTACCTATCAGGATTCATCTCTCTGCTGCTGCGCGCCGAGCCCTACCCCACATCCCGCTACGGGTCCCAGTGCATGCAGGGAAACAATTTGATGGGCATCGAGAACATCTGCGAGCTGGCCGCACGGCTGCTCTTCAGCGCTGTGGAGTGGGCCAAGAACATCCCCTTCTTCCCTGACCTTCAGCTCATGGACCAGGTGGCGCTCCTGCGCATGTCATGGAGTGAGCTGTTTGTGCTGAACGCGGCCCAGTGCTCCATGCCGCTGCACGTGGCGCCCCTGCTGGCGGCGGCTGGCCTGCACGCATCGCCCATGTCTGCGGAGCGCGTGGTGGCGTTCATGGACCACATCCGGGTGTTCCAGGAGCAGGTGGAGAAACTGAAGGTTCTGCAGGTGGACACGGCTGAGTACTCCTGCCTCAAATCCATCGTGCTCTTCACTTCCGATGCCATGGGCCTGTCGGATGTGGCCCACGTGGAGAGCATCCAGGAGAAGTCCCAGTGTGCCCTGGAGGAATATGTGAGGAACCAGtaccccagccagcccaaccgcTTCGGCCGCCTGCTCCTGCGGCTGCCCTCCCTCCGCATCGTCTCCTCGCCCGTCATCGAGCAACTCTTCTTTGTGCGCCTGGTGGGCAAGACGCCCATCGAGACGCTGCTGCGCGACATGCTCCTCTCCGGCTCCAGCTACAACTGGCCCTACATGCCCGTGCAGCGCGACCGCCCCATCTCCCTCCACTACAATGAGAACGGGCCCTGAGGAAGACGAGTCGCTGCGTATTCAGCTCTTCATCCAGCCTTCATCGACCATCCCTCAATCCCTCTGTTtatctcctccatccatcccctggAAGACCACCACCGTTCCAGCAAAAAGCAGACCGATCACCTGACTATCTCACCACTCCCCTCCCCCATTCACCAATCCAGCCATTCACACGCCTCTTCTCCAGGGGACCACAGCCAATAGAGAGACTTGGTGGCTGCCATGGCCCCTCCTACTTCGCCAACGCCACGTTTGTGAGGTGGCACTAGACGGGCCGGTTGGCAGAAGGGTTTTTCTCCTGCAGCTCTGTAGGACTCACGCCGTTAAAGGCAATTTTGTCAGTCTTGGACTCGAAGCGGTTGCGGCTACTGGCGACGCAGTCATTGTATTGTTGGCACTGTGCTTGCATCTAAAGGACACGTGTCCAAGAATCTCCACTGTCTGGCGATTTAGAGCAAGGCCTTTGCCGATAGAACTGCTTGACCGAGAGAGCCAGGCCAAAGGTTCTTCATCAACCAATTATTTTTTAATAAACCAGAAGCCATTAAAAAATGAATGCCAAATTTCCTTGGAATTTTCAGAAGACATttattgtgcgtgtgtgtgtgtattagcacTGTTTATAATGAGAGaaattcatgattgtgtccataTGTATGTCATTGACTCATAGACATCCACGTTAAGGGGTATGTTGAGACTAGCTCAGGTTCAGGatggggagacaggacagacaggacagacatgcCACTAGGAAACAGAGAATCACGCCTCACCCAGGGCAAAATACCTATCAACAGCCTGTATCAAAGTGGAACATGGATATTAATTGTCTTTGTGGTAGTGGTGACAAAAATACCTTTTGTTTTGTCTATAATTTGATGTCAGAGGGTGTGGGAAgttgcaaataaaaaaaataaaaataggcaCTTGCAATGTGAAACTATCCAGAACCCACACTCGACCTACTCCCATCATACACACAGCACTGGTAGATTCTTCCTCAGCTGCCATTTTGAGGTCAAAACTACAGGGCCACTAACTGGTAATGGTCAGTGTACTTCTGCCACTGTTTCAAAGCGGAATATCATACAAGTATCCCTTCATAACATCTACATAATGCTGTCATAGAAATGACATGACACATGCCAGTTAATGCCAGTTAGTTTCATGTCACAATCACATTTGATGTTTTTGTGGAAAATGTAAATTGTTATGGAGCCTGGATCAATACGCATTTGAAAACTCTAGTTGTACTTGCCTTAGAACAAGATTTTGTCACTGAGCATTTATTTTATGACTGTGCCATAATCTGAAGTTACCTGTTATGACAGGCAATATGTCCTCCACATGACATTGTCATGTAGGGGTAGAGACCACCTCAATTCAATTGTCATTCAAGCAGCATACTAGGACATTGTATCACTAACCTCCAAACCTCCATTAAAGTTACAATGGTCATCTACTGTGATGTAGCATAGATATTATTATGCGTTTGAGTTACCATCAATTGATGACGGGCTGTAAGGCAACACTGATTGTTGGACGACCAGTCTGTTTTTTAACGTGGCACTGTGGTATCAGCAACAATTATTGGGATTTGAAAGCCATTGGGACCTTGGAGAGCAGGACTGTCTGTTGATGAATTAGTTCACAGAATATTTCTATAAGAgtatgtttttttctctctattTTTTTGTTTGGAAATTATGGATCCATTAATTGAAATAAACATATGTTGTTCACAGTTA
>XM_036946284.1
TCTAACTATGATTCTCAGAGATGGGACAGGCTGCCGACGGGTGAAGTACATGATTGGCAAAGATATCTGCTTGTAAATATACTGCATCTACCACAGAGCACTCCATCCATGGTTAATCGTCATTTCTATTCAGTCCTCATCGTGGCGCACAACATTAGAGGAACGAAAGCAacttttattttggtattgcACGTCCGTATGAGTTCACAAGACAACTTCGATCACATAATTGCGTAGAACTATGGTCAGTATTGTTCTTTTGTGATTGAGAGAAGATGTTGATTTAGTTCAGTTCGATTATTAAGCAGAATAAGATTCGAAGCAGTCAATATTCATGAACATGACACTTTAACGACCACTTCTCCATTCTGTACATGCTGTTGGTCGACTTTTCAAAAACACGAAGTTTTTGAGAGAGCGTGTTTATGGATTTCTCCCGAGAGGAGAACACTGGCAGTAGGCTCCATTCTTACGAAATAGTCATGTTGATACCGTGCTGTCTTCGTAAACTTTGATAGAAGTTTACAGACGATACGTTTACGACAGGGACATTTGATTAACGAATTAAGAACATCTATTTGAGAATATATTAAATACTTTTTGGAGGAAGTGGGAAGCGCCTTTTCGCTCTGCCTTGTTTTCCCAAGACGTCAGAACGGATTCTTATCTCCTCCCCGCGCTACGGAGTTGGACTTGTATCTGTTGTTTAACCAACGTGTTTTAGGATAGCATGGCAATGGTAGTAAACCAGTGGCAAGAGAACATTTCGGCGGATCCCGGGTCCCAGCTCCAGATTTGCAGTCAGGAGCCTGGCGGGACACCGGGAACCCCCTCTGGTTCCACCCCGGGGAACGATGCACTTTCCGGGGACAAGATCCCCAACGTGGACTGCATGGTGTGCGGGGATAAGTCCAGTGGCAAGCATTACGGCCAATTCACCTGCGAGGGCTGTAAAAGCTTCTTCAAACGTTCGGTGCGACGGAACCTCAGTTACACATGTCGGGGGAACCGGGACTGTCCCATCGACCAACATCATCGAAACCAGTGCCAGTACTGCCGACTGAAGAAGTGCCTCAAAGTCGGTATGAGAAGAGAAGctgtCCAGAGAGGCCGCATGTCCAACTCCCAGTCTAGCCCGGGTCAGTACCTGACCAATGGCAGCGACCCTTACAATGGGCAGCCCTACCTATCAGGATTCATCTCTCTGCTGCTGCGCGCCGAGCCCTACCCCACATCCCGCTACGGGTCCCAGTGCATGCAGGGAAACAATTTGATGGGCATCGAGAACATCTGCGAGCTGGCCGCACGGCTGCTCTTCAGCGCTGTGGAGTGGGCCAAGAACATCCCCTTCTTCCCTGACCTTCAGCTCATGGACCAGGTGGCGCTCCTGCGCATGTCATGGAGTGAGCTGTTTGTGCTGAACGCGGCCCAGTGCTCCATGCCGCTGCACGTGGCGCCCCTGCTGGCGGCGGCTGGCCTGCACGCATCGCCCATGTCTGCGGAGCGCGTGGTGGCGTTCATGGACCACATCCGGGTGTTCCAGGAGCAGGTGGAGAAACTGAAGGTTCTGCAGGTGGACACGGCTGAGTACTCCTGCCTCAAATCCATCGTGCTCTTCACTTCCGACATTCCACCCTATATCCCAGTTCCATCACCCCGAATCAAAGAGCGGCCATCTTACCACTGCCACCATCTTCATCCCCAGAGTGTGGCTGTGTGTGCTCAGGGAGCCAGACAAAGGGAAGTGGTGCCTGTAAAGGATGCCTGCGGAGGTGTCGGAGTTGCATGCGAGGGTTCAGTCACACAGACAGCCCTTGCTTTCTCAGCCACTGATGCCTCACACAGACCCTAAAATTGCAGATAGCTAAAAAAAAACTACACACCTGCCCTCAAAGTGGGAAATGTGTCAGATTTTGCAGTTATACTCCCCCTGGGGGGGCCCTATGTGACAAAAATATGAGGCATATTAATCTTTTGTTATGCGGAACTGATGCTCAGCAGGACCAATATTGCACAGGGGGCCGATTAAAGGGTACTGTGACAAAGGGACTAGCGTGCTGGGTGGTGGGTAAAATATCCTGTCCCAGTGCTTCTGCTGCACACTAGAGTAAAGCACTTGGGAGAAAATTACCCTCACTGTTCGATGCAGCCTTTAAACAAGGTTCATACTGGGGACAGAAACACGGGCACAGTAGTACTGAATGTGCAGTACGGTACCgtgcagtacagcacagcaccgTGCAGTACACTAAATGGGACTTTTGAGTTCACCCACCTCTGACCCCATAACCACCGAGCTCGAAGGGTGTGAAAAGTatcacacacagtcaacacactctctgtgtgGTGTGAGACTCACACCAGGGACTGGTGCTAGGGGAGGTGTGAGACTCACACCAGGGACTGGTGCTAGGGGAGGTGTGAGATTCACACCAAGGACTGGTGCTAGGGGAGGTGTGAGACTCACACCAGGGACTAGTGCTAGGGAAGGTGTGAGACTCACACCAGGGATCGGTGCTAGGGGAGGTGTGAGAGCATGGACAAAACCTCGACCCACAACTGAAGGCAAATGGAATTGTATTCCACTACATTGAATGACATATTTACATAAGGATACTGACATTTCAGCTCTAATGTATGTACGTAGCTGGACACAAATTCACATTGCAATTCAGTGTTAGGTCAACTCATCAAAACCATAATGAACCAGAAACTCATCAACGCCTAatcttctcctc
>TU154709
GGACAGGCTGCCGACGGGTGAAGTACATGATTGGCAAAGATATCTGCTTGTAAATATACTGCATCTACCACAGAGCACTCCATCCATGGTTAATCGTCATTTCTATTCAGTCCTCATCGTGGCGCACAACATTAGAGGAACGAAAGCAacttttattttggtattgcACGTCCGTATGAGTTCACAAGACAACTTCGATCACATAATTGCGTAGAACTATGctgtCCAGAGAGGCCGCATGTCCAACTCCCAGTCTAGCCCGGGTCAGTACCTGACCAATGGCAGCGACCCTTACAATGGGCAGCCCTACCTATCAGGATTCATCTCTCTGCTGCTGCGCGCCGAGCCCTACCCCACATCCCGCTACGGGTCCCAGTGCATGCAGGGAAACAATTTGATGGGCATCGAGAACATCTGCGAGCTGGCCGCACGGCTGCTCTTCAGCGCTGTGGAGTGGGCCAAGAACATCCCCTTCTTCCCTGACCTTCAGCTCATGGACCAGGTGGCGCTCCTGCGCATGTCATGGAGTGAGCTGTTTGTGCTGAACGCGGCCCAGTGCTCCATGCCGCTGCACGTGGCGCCCCTGCTGGCGGCGGCTGGCCTGCACGCATCGCCCATGTCTGCGGAGCGCGTGGTGGCGTTCATGGACCACATCCGGGTGTTCCAGGAGCAGGTGGAGAAACTGAAGGTTCTGCAGGTGGACACGGCTGAGTACTCCTGCCTCAAATCCATCGTGCTCTTCACTTCCGGTG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559540.2 False 3698 mRNA 0.48 4 33208500 33225124
XM_036946288.1 False 2846 mRNA 0.49 4 33208500 33225125
XM_036946284.1 False 2738 mRNA 0.50 4 33210584 33225125
TU154709 True 752 TUCP 0.56 3 33212664 33225102

Neighbor

gene id symbol gene type direction distance location
LOC110487594 LOC106605294 coding downstream 35531 33164978 ~ 33172969 (-)
LOC110487587 LOC106605297 coding downstream 52891 33144374 ~ 33173493 (-)
LOC110487585 LOC106605295 coding downstream 70522 33134138 ~ 33137978 (-)
LOC118936288 LOC106605301 coding downstream 128472 33075283 ~ 33080028 (-)
LOC110487583 LOC106605302 coding downstream 133620 33057005 ~ 33074880 (-)
bola1 bola1 coding upstream 29431 33254556 ~ 33256182 (-)
sv2a LOC106605292 coding upstream 31349 33256474 ~ 33313903 (-)
LOC110534759 LOC106605290 coding upstream 101887 33327012 ~ 33357457 (-)
LOC110487659 LOC106605289 coding upstream 134034 33359159 ~ 33391810 (-)
rbm8a rbm8a coding upstream 175650 33400775 ~ 33404514 (-)
G134231 NA non-coding downstream 101995 33084935 ~ 33106505 (-)
G134227 m4a8a non-coding downstream 158907 33031249 ~ 33049593 (-)
G134229 NA non-coding downstream 206583 32994377 ~ 33001917 (-)
G134253 NA non-coding downstream 226221 32981056 ~ 32982279 (-)
G134361 NA non-coding upstream 5871 33230996 ~ 33231201 (-)
G134364 NA non-coding upstream 10840 33235965 ~ 33236189 (-)
G134367 NA non-coding upstream 24795 33249920 ~ 33250188 (-)
G134369 NA non-coding upstream 28088 33253213 ~ 33253422 (-)
G134379 NA non-coding upstream 61614 33286739 ~ 33287261 (-)
G134102 NA other downstream 420379 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 456922 32738829 ~ 32756992 (-)
LOC110486999 prdm1 other downstream 1559705 31631886 ~ 31648795 (-)
G132197 NA other downstream 1665491 31536047 ~ 31543009 (-)
LOC110486868 LOC106605361 other downstream 2009688 31196917 ~ 31199241 (-)
G134668 NA other upstream 640363 33865488 ~ 33865937 (-)
G135575 NA other upstream 1379090 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 2081242 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 2449173 35674291 ~ 35700846 (-)
G137479 NA other upstream 3144879 36370004 ~ 36370328 (-)

Expression


Co-expression Network