LOC110487649 (LOC106581815)


Basic Information

Item Value
gene id LOC110487649
gene name LOC106581815
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33316290 ~ 33321834 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559571.2
CGATTGCCGCATCCTAATGACCCGATATTCCACCTGAACACATGCACATGGCCCATAAAGAGAAAAACCCTATGCGCGTTTGAAGTCAGCATTAAATTAACGTATTTGCTATATGTCGAAACGCCAAGCGTAACCTATAGACTTTCCATGTATGATAATAAATAACGTTAACGTCAATATCAACGGTTTTCATCGTTTTGGTCAAATCCAGTCTACGTCGTGTGCGCTTTTAATCTATCCTGATTACTCCAGCTGCTCTACTTCGTATTCAGTTTCTGTTCCCGTGCCGTGAATACCTGCTGTCAATGTAACCTACTCTAGTTAGAGGAACATTCGAAAGCAATTGCCATTGTAACGTTATTCATTTTCTCTCACTGGAACTGGTACAACGATACTGCTTTGTTATGCATTTTGGATTTGCCTAATTTCCATATTTAGATAGGGTGGTTTTAAAGACAACAGAGAGTGTAACATATGAAATAAGACCGACGCATAGAGGATGTGCCCCAGAAACCAGGTCGATGAAATATTGGCACTACCATGAGAGGAAGCGGTATGGACCTTTTATGGAGAATCTTAGCGGCTCTGAGCTTCGATTGTTTTAAAGGTTCGGCGTCTTCACAGAGGTCTCCAGGCAAGCTGAGCTCCAGCCAGGCAGGTAGTCTGGAAAGCAGCTCCCTGACTGGCTCGCTCTCCCTGGGGCCAGACCTGCCTCACTGCCAGTGCTGCATCTCCTACGAAGCCCGCCTGAAACGCCTGTCCTGCGGCCATCTCTACTGTGACCCTTGCACAGACCAGATCGTCAACCTGGCCTTTGAGGACATCGAGGGCCTCTCTGATTACCCCTGCCCCATGTGCAAGTCCCTCCGCAAGCTAGGGGACCTGGGCCCCCCCTCTTATGGGTACCTGGGGACCCCCTCCTTTGGGCCATGTGGGACCCTAAAGCAACAGATGGCTAAAGAGCATGGGAGCAGGTGGGGGTAAAACTGAGGCAGTTTATACTGTACATCAAGGGGtgtgggtaaaaaaaaagcaTGTTGTCCCCTCTCCAGATTAAATAATGTAGGAACTATTTTGTCTTTTCAGTTATGTCTTTAGTGTTTTGATTTGAATATTTTAATGCACTGCCTTACACTGAGATTGTGATCTGGTAACATGTGGTGGGAAGTGGCTCTGTCTTTCTTCTTTGTGTAATATGGTGGTGGAAGTGAAACTAATGGAAGTGCATAACATTACAGATAAAGTCCATTTGTGTGCCATAACATAAGTGGTTATTGCAGGGTGATTAAGCCAGATCAAAGATAAATATTAGATGTTTGTGTCAGAAAGTTCTTTATATTTATGTGTACTGATTATTATTACTAGACATTTGCACCTTATTTTATATTTTGAGTGTACTTACAGCTTATGCATTTTAATTTAACTGAATTGTACAGTGCCATACTAGTTTTAAAGTGTTCAATATCATATCGTAAATATTTATTTTGCTAAAAAATAAAGTTTGTGAATTGTA

Function

NR:

description
uncharacterized protein LOC109901466

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559571.2 True 1513 mRNA 0.43 2 33316290 33321834

Neighbor

gene id symbol gene type direction distance location
LOC110487588 NA coding upstream 156228 33130317 ~ 33160062 (+)
tmem176l.1 m4a8a coding upstream 267002 33045832 ~ 33049288 (+)
LOC110487536 NA coding upstream 270569 33028873 ~ 33045721 (+)
LOC110487571 m4a8a coding upstream 282437 33030310 ~ 33033853 (+)
LOC110487479 LOC106605309 coding upstream 314284 32988834 ~ 33002008 (+)
LOC110487688 LOC106605287 coding downstream 84975 33406809 ~ 33408519 (+)
ntrk1 LOC106605284 coding downstream 112864 33434698 ~ 33460997 (+)
LOC118939517 NA coding downstream 209756 33531590 ~ 33540695 (+)
LOC110487797 LOC106605278 coding downstream 346309 33668143 ~ 33694941 (+)
LOC110487856 LOC106581981 coding downstream 397999 33719833 ~ 33726238 (+)
G133542 NA non-coding upstream 22164 33292540 ~ 33294126 (+)
G133527 NA non-coding upstream 52123 33263613 ~ 33264167 (+)
G133525 NA non-coding upstream 55558 33256492 ~ 33260732 (+)
G133523 NA non-coding upstream 62984 33253087 ~ 33253306 (+)
G133520 NA non-coding upstream 71010 33244997 ~ 33245280 (+)
G133563 NA non-coding downstream 1309 33323143 ~ 33323421 (+)
G133564 NA non-coding downstream 2845 33324679 ~ 33324919 (+)
G133565 NA non-coding downstream 3306 33325140 ~ 33325355 (+)
G133566 NA non-coding downstream 4195 33326029 ~ 33326349 (+)
G133567 LOC106605290 non-coding downstream 5209 33327043 ~ 33329134 (+)
G133473 LOC106605294 other upstream 146912 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 1428718 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 1949968 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 2023256 31262054 ~ 31294577 (+)
G131517 ccne2 other upstream 2566336 30748055 ~ 30749954 (+)
G133663 LOC106605282 other downstream 174620 33496454 ~ 33497285 (+)
G133760 LOC106605274 other downstream 492199 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 640583 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 1366121 34687955 ~ 34692286 (+)
G135916 NA other downstream 1649806 34971640 ~ 34971931 (+)

Expression


Co-expression Network