rbm8a (rbm8a)


Basic Information

Item Value
gene id rbm8a
gene name rbm8a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33400775 ~ 33404514 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559597.2
CTAATGAATACACACCAGGCAGCGATACTTCCCGGATATCGTCAACGTTCACGCGCAGTAGCGCAAAAACAGGAGCTAACAACATGGCTGACGTACTAGATCTTCATGAAGCGGGAGGCGAGGACTTTGCTATGGATGAGGATGACAGCATCCACAAGTTAAAAGAGAAGGCAAAGAGGAGAAAGGGTCGAGGTTTTGGTTCAGAGGAGGGAGCAAGGTCCAGAGTGAGAGAGGACTATGATACCGTGGAGCAGGATGGTGATGAGCCAGGTCCTCAGAGATCTGTGGAGGGTTGGATCCTTTTTGTGACTGGGGTACATGAAGAGGCCACTGAGGAGGACATCCACGACAAGTTTGCGGAGTTTGGAGAGATCAAGAACCTACATCTGAACCTGGACCGAAGAACAGGTTACCTCAAGGGTTATGCGCTGGTGGAGTATGAGACATACAAAGAAGCCCAGGCAGCCATGGAAGGGTTGAATGGCCAGGACATGATGGGCCAGCCTATCAGTGTGGACTGGGGCTTCGTCAGAGGACCACCCAAGAGCAAGAGGAGGGGTGGTGGACGTAGACGCAGCAGGAGTCCAGACAGGAGACGACGTTGATTCCCTCACATAGCGTAGTCCCAGTTCCAAGCAAGGGCTGTTGCtctttaaagttttttttttttttcatttgtgCTTTGTAATAGCGTTAACTTCACTGATGGCTCTATGGTAAATCGGTTTAAATTGCAAATGGTCCTGACAAGTGTGCTTTAGAGACAAAATTAAGAGTTGTTCCAGCAAAATGGCAGGGCtgccattttattttattttttctgaAACAACGAACACCAAATGCACTATGATCAGTGAAACTTTGTTGcataaaaaaactgtttttaagTAGTGGTATGTGTTTTCTTATGGATCTTTCTATTCTGTTTCAAGGTTTAATTTGGTTATGTTTTGGGCCCTGTTTCCCAAAAGTTCATTGTTATAACCATAGGATCCTTAGTTTTAATGATGAACATACTCTTTAATGTTTTTGGGAAACCGGGCATTTGTGCagctttttttaatgtattactTGGGAATAAAACATTTTAAGTGGG
>XM_021559590.2
TCCAACTAATGAATACACACCAGGCAGCGATACTTCCCGGATATCGTCAACGTTCACGCGCAGTAGCGCAAAAACAGGAGCTAACAACATGGCTGACGTACTAGATCTTCATGAAGCGGGAGGCGAGGACTTTGCTATGGATGAGGATGGTGATGACAGCATCCACAAGTTAAAAGAGAAGGCAAAGAGGAGAAAGGGTCGAGGTTTTGGTTCAGAGGAGGGAGCAAGGTCCAGAGTGAGAGAGGACTATGATACCGTGGAGCAGGATGGTGATGAGCCAGGTCCTCAGAGATCTGTGGAGGGTTGGATCCTTTTTGTGACTGGGGTACATGAAGAGGCCACTGAGGAGGACATCCACGACAAGTTTGCGGAGTTTGGAGAGATCAAGAACCTACATCTGAACCTGGACCGAAGAACAGGTTACCTCAAGGGTTATGCGCTGGTGGAGTATGAGACATACAAAGAAGCCCAGGCAGCCATGGAAGGGTTGAATGGCCAGGACATGATGGGCCAGCCTATCAGTGTGGACTGGGGCTTCGTCAGAGGACCACCCAAGAGCAAGAGGAGGGGTGGTGGACGTAGACGCAGCAGGAGTCCAGACAGGAGACGACGTTGATTCCCTCACATAGCGTAGTCCCAGTTCCAAGCAAGGGCTGTTGCtctttaaagttttttttttttttcatttgtgCTTTGTAATAGCGTTAACTTCACTGATGGCTCTATGGTAAATCGGTTTAAATTGCAAATGGTCCTGACAAGTGTGCTTTAGAGACAAAATTAAGAGTTGTTCCAGCAAAATGGCAGGGCtgccattttattttattttttctgaAACAACGAACACCAAATGCACTATGATCAGTGAAACTTTGTTGcataaaaaaactgtttttaagTAGTGGTATGTGTTTTCTTATGGATCTTTCTATTCTGTTTCAAGGTTTAATTTGGTTATGTTTTGGGCCCTGTTTCCCAAAAGTTCATTGTTATAACCATAGGATCCTTAGTTTTAATGATGAACATACTCTTTAATGTTTTTGGGAAACCGGGCATTTGTGCagctttttttaatgtattactTGGGAATAAAACATTTTAAGTGGG
>XR_005036455.1
TCCAACTAATGAATACACACCAGGCAGCGATACTTCCCGGATATCGTCAACGTTCACGCGCAGTAGCGCAAAAACAGGAGCTAACAACATGGCTGACGTACTAGATCTTCATGAAGCGGGAGGCGAGGACTTTGCTATGGATGAGGATGGTGATGACAGCATCCACAAGTTAAAAGAGAAGGCAAAGAGGAGAAAGGGTCGAGGTTTTGGTTCAGAGGAGGGAGCAAGGTCCAGAGTGAGAGAGGACTATGATACCGTGGAGCAGGATGGTGATGAGCCAGGTCCTCAGAGATCTGTGGAGGGTTGGATCCTTTTTGTGACTGGGGTACATGAAGAGGCCACTGAGGAGGACATCCACGACAAGTTTGCGGAGTTTGGAGAGATCAAGAACCTACATCTGAACCTGGACCGAAGAACAGGTTACCTCAAGGGTTATGCGCTGGTGGAGTATGAGACATACAAAGAAGCCCAGGCAGCCATGGAAGGGTTGAATGGCCAGGACATGATGGGCCAGCCTATCAGTGTGGACTGGGGCTTCGTCAGAGGACCACCCAAGAGCAAGAGGAGGGGTGGTGGACGTAGACGCAGCAGGAGTCCAGACAGGAGACGACGTTGATTCCCTCACATAGCGTAGTCCCAGTTCCAAGCAAGGGCTGTTGCtctttaaagtttttttttattttattttattttttctgaAACAACGAACACCAAATGCACTATGATCAGTGAAACTTTGTTGcataaaaaaactgtttttaagTAGTGGTATGTGTTTTCTTATGGATCTTTCTATTCTGTTTCAAGGTTTAATTTGGTTATGTTTTGGGCCCTGTTTCCCAAAAGTTCATTGTTATAACCATAGGATCCTTAGTTTTAATGATGAACATACTCTTTAATGTTTTTGGGAAACCGGGCATTTGTGCagctttttttaatgtattactTGGGAATAAAACATTTTAAGTGGG

Function

symbol description
rbm8a Predicted to enable mRNA binding activity. Predicted to be involved in RNA splicing and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA metabolic process; mRNA transport; and regulation of translation. Predicted to be located in nucleus. Predicted to be part of U2-type catalytic step 1 spliceosome and exon-exon junction complex. Human ortholog(s) of this gene implicated in thrombocytopenia-absent radius syndrome. Orthologous to human RBM8A (RNA binding motif protein 8A).

NR:

description
RNA-binding protein 8A isoform X1

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006417 regulation of translation biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0051028 mRNA transport biological_process
GO:0016607 nuclear speck cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12876 RBM8A, Y14; RNA-binding protein 8A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559597.2 False 1096 mRNA 0.44 6 33400775 33404509
XM_021559590.2 False 1107 mRNA 0.44 6 33400775 33404514
XR_005036455.1 True 971 mRNA 0.45 7 33400775 33404514

Neighbor

gene id symbol gene type direction distance location
LOC110487659 LOC106605289 coding downstream 8965 33359159 ~ 33391810 (-)
LOC110534759 LOC106605290 coding downstream 43318 33327012 ~ 33357457 (-)
sv2a LOC106605292 coding downstream 86872 33256474 ~ 33313903 (-)
bola1 bola1 coding downstream 144593 33254556 ~ 33256182 (-)
LOC110487618 LOC100380645 coding downstream 175650 33208500 ~ 33225125 (-)
LOC110487699 NA coding upstream 4402 33408916 ~ 33413968 (-)
LOC110487724 LOC106605285 coding upstream 62209 33466723 ~ 33476821 (-)
smg5 LOC106605282 coding upstream 84894 33489408 ~ 33503810 (-)
syngap1b LOC106605281 coding upstream 118521 33523035 ~ 33590990 (-)
LOC110487763 LOC106605281 coding upstream 206342 33610856 ~ 33644021 (-)
G134385 NA non-coding downstream 107088 33292844 ~ 33293687 (-)
G134379 NA non-coding downstream 113514 33286739 ~ 33287261 (-)
G134369 NA non-coding downstream 147353 33253213 ~ 33253422 (-)
G134367 NA non-coding downstream 150587 33249920 ~ 33250188 (-)
G134456 NA non-coding upstream 29190 33433704 ~ 33434590 (-)
G134483 NA non-coding upstream 83280 33487794 ~ 33488007 (-)
G134484 NA non-coding upstream 84113 33488627 ~ 33488924 (-)
G134490 NA non-coding upstream 100329 33504843 ~ 33505093 (-)
G134102 NA other downstream 612654 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 649197 32738829 ~ 32756992 (-)
LOC110486999 prdm1 other downstream 1751980 31631886 ~ 31648795 (-)
G132197 NA other downstream 1857766 31536047 ~ 31543009 (-)
G134668 NA other upstream 460974 33865488 ~ 33865937 (-)
G135575 NA other upstream 1199701 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 1901853 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 2269784 35674291 ~ 35700846 (-)
G137479 NA other upstream 2965490 36370004 ~ 36370328 (-)

Expression


Co-expression Network