Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110487688 |
| gene name | LOC106605287 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 33406809 ~ 33408519 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| type-4 ice-structuring protein LS-12-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021559607.2 | True | 702 | mRNA | 0.52 | 4 | 33406809 | 33408519 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110487649 | LOC106581815 | coding | upstream | 84975 | 33316290 ~ 33321834 (+) |
| LOC110487588 | NA | coding | upstream | 246747 | 33130317 ~ 33160062 (+) |
| tmem176l.1 | m4a8a | coding | upstream | 357521 | 33045832 ~ 33049288 (+) |
| LOC110487536 | NA | coding | upstream | 361088 | 33028873 ~ 33045721 (+) |
| LOC110487571 | m4a8a | coding | upstream | 372956 | 33030310 ~ 33033853 (+) |
| ntrk1 | LOC106605284 | coding | downstream | 26179 | 33434698 ~ 33460997 (+) |
| LOC118939517 | NA | coding | downstream | 123071 | 33531590 ~ 33540695 (+) |
| LOC110487797 | LOC106605278 | coding | downstream | 259624 | 33668143 ~ 33694941 (+) |
| LOC110487856 | LOC106581981 | coding | downstream | 311314 | 33719833 ~ 33726238 (+) |
| tap1 | tap1 | coding | downstream | 324925 | 33733444 ~ 33746441 (+) |
| G133551 | NA | non-coding | upstream | 43903 | 33359978 ~ 33362906 (+) |
| G133552 | NA | non-coding | upstream | 47091 | 33359158 ~ 33359718 (+) |
| G133567 | LOC106605290 | non-coding | upstream | 77675 | 33327043 ~ 33329134 (+) |
| G133566 | NA | non-coding | upstream | 80460 | 33326029 ~ 33326349 (+) |
| G133565 | NA | non-coding | upstream | 81454 | 33325140 ~ 33325355 (+) |
| G133648 | LOC106605285 | non-coding | downstream | 58211 | 33466730 ~ 33471416 (+) |
| G133655 | NA | non-coding | downstream | 73764 | 33482283 ~ 33482552 (+) |
| G133670 | NA | non-coding | downstream | 95625 | 33504144 ~ 33504466 (+) |
| G133676 | NA | non-coding | downstream | 101026 | 33509545 ~ 33509807 (+) |
| G133677 | NA | non-coding | downstream | 103793 | 33512312 ~ 33512793 (+) |
| G133473 | LOC106605294 | other | upstream | 237431 | 33167438 ~ 33169378 (+) |
| G132342 | LOC100136303 | other | upstream | 1519237 | 31834170 ~ 31887572 (+) |
| eaf1 | LOC106581241 | other | upstream | 2040487 | 31360408 ~ 31366322 (+) |
| LOC110534710 | LOC106605356 | other | upstream | 2113775 | 31262054 ~ 31294577 (+) |
| G131517 | ccne2 | other | upstream | 2656855 | 30748055 ~ 30749954 (+) |
| G133663 | LOC106605282 | other | downstream | 87935 | 33496454 ~ 33497285 (+) |
| G133760 | LOC106605274 | other | downstream | 405514 | 33814033 ~ 33814483 (+) |
| G134735 | LOC100136012 | other | downstream | 553898 | 33962417 ~ 33962658 (+) |
| si:dkey-30e9.6 | LOC106605205 | other | downstream | 1279436 | 34687955 ~ 34692286 (+) |
| G135916 | NA | other | downstream | 1563121 | 34971640 ~ 34971931 (+) |
