LOC110487699


Basic Information

Item Value
gene id LOC110487699
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33408916 ~ 33413968 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468296.2
ATTCCCCACTGCCCATTGAGACAGTCTGTGTCCTTACTCCTCAGACACCAAAGCATACAGCACTCTGCTTAAAGACAAGGCATTTGGAACTGTAGATATTGGATTGGTCCCACTTTTTATAGCCCAAAACCATCTGGTTCGCCATTTTCCACGCGCAGTTCAAGCCCTTCTGGATGACCCTTCTAGGTGCCTAAATTGAAACATGTTTCAGAGATGTTCACCCTTTTCCATTGACTTTTCAAAGCAATGAGAGTATGGAAGGGACTGCAGAGATTTTGGAGTGGGATGTTTTCCATCTTCCCTTGTTGCCAACTGAGAGGACAAAATACAAAAGACAGGTAGGCCTACACCAAATTTAAATTAGGTCAATTTTGGTCTGTCAAAACATCAACAAACTTTCCATCTAAAACTGAAAGTAATTTATATTTAGGTTATTATATCAATGATGATGACGTTGAAGCCATAAACTTACATTGCGGATGCACGGACAACACTCTAGTCTAGTGTCTAGTCTGCCTGAAGAGGGATTGATCAGCATCCCAAATGTCCATTCGGGCACGCTGATTGGTTGAAAGGAACAGCCTTTTTTTGATGACTAcgatgatgaagaagaagatggtggtggtggtgatatagaGAGCAATAGTGATTACGTtttttttgtaggcactaactctgccatggttcattgaacaaagcCTATGTGAAAATGAATGGAGTTTTTGTAGGGTTTTCGGATAAAcacgaaaataaggtctgtggtaaacacaggcttaggagatattatacatttttgttctatgagataatcttcatcagctaacatCACTTTTTGTTCATTTTTAAGCATTTATGTAACTTTAAAAAACTTAACGCACTTAAAGACTTTGTAATTCATAAAgttcatgttaactgactgacaCCTCATAGAACAAAACCTATAAGATCTCATAAAACTGttttaacctcagaccttattttcgccGTTTATTCCAAAACTCTATTCTTTCCCCATTCATTTTGCCCTTAGTAATGGCTGAATGAACCAGAGGTAAATTATTTCCGGTTTTTAGGACTACAAACGGTCGTACTCTGTATGATTAGGGTTTAAGAATGTAATGGTGATGTCGTGATGATGATAAAGCCTATGAATTGCACTatcaaaatatactgtatatattattctTTTGACCCCCTTCAGTTACGTGGTGGGCTATTCCTCTGAAGTCACTCATGTCAGGCTTCTCTCGGATGCACAACTGTGTCGCGCGACTTTCAGCGTTGCGGTCTCATTCGACACTGGAGACTTTGGCGCCATCCCTGCGGTCACCACGTCTGCCGTGAGTGCATGGATCGGATCACAGATGATGGTTTCCCGCGACATCGAGGGGTTTAGCTCAAATCCCTGTCCACGGTGTAAATCAGTTATAGCCTACTAAATCTGTAACCGTGACTGTATATTAGTGCCTTTTCCTGAGTTTTTGTAAACTTTTCTTTTTCTATGCACTTTGTAGTCCCAGCATGCCCCTATTACCCAGTCAATTCAACAGAGCTACGGTATCATCAAGACAAAGGACAAGCAAAACTATTTCACCATTTATCTCGTGAATCAGATCAGATTTTCATTGTCATCTTTGAGATTTTATgcattaatgagtgtgtgtagtTGGCCTAGGCCACAGTCAATGACATTAATATAACAATCTAAATGTAGCTGACGCTAAACTCCATCAAATACAAATTACATTTAAAGAATATTAACAACTCGGGCTCatagacagggttggggagaAACTGATTGCATGTAATCATGTTATCTGATTACAAAAAAAGTAGTTCCAGCTAAAATTATATAATCATATTACAGATAcatttgaaaaactagatgattactccTTGGATTACTTGCCTGCGAAAAAAAAATGTGACCCTTTTActgttctcaatgacattcaattcagccttgaaaaaaggcgcaaatttagcttgttccacctgagcgagtctgaccatgAATCAGAGACCacaatgatgacaca
>TU154818
AAAACATATCCATCAGTATTCCCCACTGCCCATTGAGACAGTCTGTGTCCTTACTCCTCAGACACCAAAGCATACAGCACTCTGCTTAAAGACAAGGCATTTGGAACTGTAGATATTGGATTGGTCCCACTTTTTATAGCCCAAAACCATCTGGTTCGCCATTTTCCACGCGCAGTTCAAGCCCTTCTGGATGACCCTTCTAGGTGCCTAAATTGAAACATGTTTCAGAGATGTTCACCCTTTTCCATTGACTTTTCAAAGCAATGAGAGTATGGAAGGGACTGCAGAGATTTTGGAGTGGGATGTTTTCCATCTTCCCTTGTTGCCAACTGAGAGGACAAAATACAAAAGACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468296.2 False 2039 mRNA 0.39 3 33408916 33413951
TU154818 True 355 lncRNA 0.44 3 33410617 33413968

Neighbor

gene id symbol gene type direction distance location
rbm8a rbm8a coding downstream 4402 33400775 ~ 33404514 (-)
LOC110487659 LOC106605289 coding downstream 17106 33359159 ~ 33391810 (-)
LOC110534759 LOC106605290 coding downstream 51459 33327012 ~ 33357457 (-)
sv2a LOC106605292 coding downstream 95013 33256474 ~ 33313903 (-)
bola1 bola1 coding downstream 152734 33254556 ~ 33256182 (-)
LOC110487724 LOC106605285 coding upstream 52772 33466723 ~ 33476821 (-)
smg5 LOC106605282 coding upstream 75457 33489408 ~ 33503810 (-)
syngap1b LOC106605281 coding upstream 109084 33523035 ~ 33590990 (-)
LOC110487763 LOC106605281 coding upstream 196905 33610856 ~ 33644021 (-)
LOC110487773 LOC106605251 coding upstream 234172 33648123 ~ 33662621 (-)
G134385 NA non-coding downstream 115229 33292844 ~ 33293687 (-)
G134379 NA non-coding downstream 121655 33286739 ~ 33287261 (-)
G134369 NA non-coding downstream 155494 33253213 ~ 33253422 (-)
G134367 NA non-coding downstream 158728 33249920 ~ 33250188 (-)
G134456 NA non-coding upstream 19753 33433704 ~ 33434590 (-)
G134483 NA non-coding upstream 73843 33487794 ~ 33488007 (-)
G134484 NA non-coding upstream 74676 33488627 ~ 33488924 (-)
G134490 NA non-coding upstream 90892 33504843 ~ 33505093 (-)
LOC110487618 LOC100380645 other downstream 183814 33208500 ~ 33225125 (-)
G134102 NA other downstream 620795 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 657338 32738829 ~ 32756992 (-)
LOC110486999 prdm1 other downstream 1760121 31631886 ~ 31648795 (-)
G132197 NA other downstream 1865907 31536047 ~ 31543009 (-)
G134668 NA other upstream 451537 33865488 ~ 33865937 (-)
G135575 NA other upstream 1190264 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 1892416 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 2260347 35674291 ~ 35700846 (-)
G137479 NA other upstream 2956053 36370004 ~ 36370328 (-)

Expression


Co-expression Network