ntrk1 (LOC106605284)


Basic Information

Item Value
gene id ntrk1
gene name LOC106605284
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33434698 ~ 33460997 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559622.2
gggagtgagggtgGGGAGGCTGCAACCCACCAGCATCCCCAGGGCCCCTTGCCTGCCTCGCTCCTGCTGCTCGCTGCTGCTGTGGCTCAATACCAGAGACTCCTGGCTGGGATCACAACCCTGCGAGTCAGCCCAGAGAAGATCTGCTTTGTGTGGAGCCTTCCAGTCTGTTCTCCTGTTTAGTTCTACTCTGTCTCAGTCTGCACTGACAACTTTCTGAGCTGCCTCTCCGCAATCTCCATCATCATGGCAGTGGTTGTGGGTTCTGCTCCATGGGTAGCCCCAATGGCTCAGGTACTACTGGCAATCACCCTGGCAGTACCAGCCCTGGGAGGGTGCCCATCTGCCTGCCGGTGCTCCTTCGCCATGCTGCAGTGCCTGGAGCCCAATGGCATTGCCACTATACCCGCGTTGGCACTACAGGAGAGCGAGAACGTCACGGAAATTTACATCGAAAATCAAGCCGACCTGGAGAACATCACAGAAGTAGACCTTGCCAATTATAGAGAGTTGAAGAATCTCACGGTCACGTTCTGCAGGCTGGCGTACATCTCGGCGAATGCTTTCCAACACAACCTCAAGCTCCAAAATGTAAACCTGGCATCTAACTCCCTGGAGCATATCAGTTGGAAGGTGTTCCATTTTCTTCCCCTGCTCAACCTGGTTTTGAGGGACAACCCCCTTGAATGCTCCTGTGATATCCATTGGCTGCAGCAATGGCAGCTTAACGACCACAGTGACCTCGACAACCAACCGCTACAATGCTTCTCAAATGGCCATGCCCTACAGTTAGACTCCTTAGAGATGGAGAATTGCACTGTACCGGATGTCGCCATTGTCCATGCCAACACCAAGGTCCAGGAGGGAGGCAACCTGACATTTGTGTGTCAGGTGACAGGAGTGCCCATGCCTGTAGTGAGGTGGCGCACGAATAAACTGCTGTCTCGCTATACTGTACAGGAGAGGTTCTGGGGCTCCACTTTGGAGCTGGAGTTGCAGCTGTGGAATATGTCCTCAGAAGACAACCTGCACAACTTGACCTGTGAGGCAGAGAACCGGGCAGGGCCTGGGGAAGAGAAAGTGACGTTGGACATTGAATTTCCATCCAAAATCATATTCCTGCACAACGCTGAGCAACAGCACCACTGGTGTTTCCCCTTTAAGGTGGATGGGAACCCTGAGCCAACCATCCGCTGGCTTTTCAACGGCTCCAACCTGACCGAGGGCCTTTACACCTACACACAGTTCATTCCCGACTCGGACGACGGCTCTGTGAAGCACGGTTGTCTATTTCTCAACAAGCCCACCCACCTGAACAACGGCCTCTACACCATCATCGTGGGGAACAGACTGGGCGTGGACCAAGCCACGGCCACAGGGATGTTCATGGACAACCCCTTTGACCCCTTTGATCCTGAGGGCATCATCCCAGTCCTTGAAGAAAGTGATCCACTTCCCACCAACAAATCTAATGAGGATGTCACTGAGAACACGGAGAGCAGAGTGTTTGGGGTGTCAGTGGCAGTGGGTTTGGCTGTGTTTGCTTGCGCCTTCCTCCTTATTATGGTACTGGTCATCAACAAGTGCGGCCAGCAGTCCAAGTTTGGTATTCACCgttcatctgtCTTGGGAACAGAGGATGATCTTGCTGTGTCACTGCGTTTCATGAACTTTGGGACCAGCCCTCCTTCCTCTGACGACTCTGGCATGTCCAGCTTTGTGGAGAACCCCCAGTACTTCTGTGGCATCTTCAAAGACAAAGACATGTGTGTGCAACACATCAAAAGACAGGATGTAGTTCTGAAGTGGGAATTGGGTGAGGGGGCGTTTGGCAAAGTCTACCTGGCAGAGTGTGCCAACCTCAGTCCGGACAGTGACAAAATGCTGGTGGCCATCAAGACTCTGAAGGATGCCAATGAGTCGACCCGGCAGGACTTCCAGAGAGAGGCTGAGCTGCTCACAGTGCTCCAGCACCAGAACATTGTTCGCTTCTATGGAGTGTGTACAGACGGAGAGCCACTGGCGATGGTGTTTGAATACATGAGACATGGAGACCTCAACCGCTTCCTCAGGGCGCACGGTCCAGATGCCCATATCCTGGAGGAGGTGAAGATGCCCCCGTTGGGCCAGCTCACTCTTCCCCAGATGCTGCACATCGCCGCCCAGATCGCTTCAGGCATGGTCTACCTGGCCTCCCTTCACTTCGTGCACCGGGACCTGGCCACACGAAACTGCCTGGTGGGAGATATGGGAGAGGGTCTGATGGTCAAGATAGGAGACTTTGGCATGTCCCGGGACATCTACAGCACAGACTACTACAGGgtaaagGTGGGTGGGCGTACGATGCTTCCTATTCGCTGGATGCCTCCGGAGAGCATCATGTACAGGAAGTTCACCACGGAGAGTGATATCTGGAGCTTTGGAGTGGTCCTCTGGGAGATCTTCACCTATGGGAAACAGCCCTGGTACCAGCTCTCCAACAGTGAGGCTATCGAGTGCATTACACAGGGCCGGGAGCTGGAGAGACCACGCACTTGCCCCAAAGAGGTGCACGGCCTGATGCAGGGCTGCTGGCAAAGGGAGCCCCAGCAGAGGCTGGTCATCAAGGACATCCACAGCCGCCTCCTTGCCCTTGTCAAGAGCCCCCCTATCTACCTGGACATCCTGGGGTAGAGGTTGGGAGGTCTGGCGCTGGGGCAGTGTCCAGGCAAGGGGAAGTAGGGGAACTTACGGTCAGGGATGACGGGTATTGGGAAGGGGTGGGAGTTAGGTAAAGGACTGTGCGATGGCAATCCTGAACTTAAGCATTGCCGTCATTTACCTCTATTGGTCTTAAACACACCGACACCCCCTCTGATTGGATATTTGCTCAGGCCAGACTTAGCAAGGATCTGATCGGTACCATTGGGTTGGGAagggagtagggtgaagttgctcCTAGATGCTGATATTGGGTATTTTTGGGCCACTAATGGTTACAGATCggagtgggggaggggaagctgatcccagatctgtgcctcagaGAAACTTTACCCTGAAGCGACGGGAAGACTATGAAGATGGGGGTTACTTCCTACTTCCCGGTCACTGTTTTTTAACCCTAAAGCTGGACATACTGTACGGACACTGGCAACATCCATGCTGCTTCAGCTTTGCCTACTACCCCAGCTCGCCTCGTCTCATGACGACCCAGCCCCAACTCTGTGTGCCGCTGACTGGGAGCGGGAGGAAAAGAACGAGCCAGCGAAGATCTATCAAGTGTTTACTGTGAGTGAGTGTTTTATTGTGTGACTGAACGGGTGTTGTCCTGATGAAGGGTTTTGCATGATTGGAGGAATGCagactatacagtgcctttgggaatgtattcacaccccttgacttcttccacattttgttacattacagttttattctaaaattgatgaaatcgttttccccctcatcaatctacacacaat
>XM_021559629.2
gggagtgagggtgGGGAGGCTGCAACCCACCAGCATCCCCAGGGCCCCTTGCCTGCCTCGCTCCTGCTGCTCGCTGCTGCTGTGGCTCAATACCAGAGACTCCTGGCTGGGATCACAACCCTGCGAGTCAGCCCAGAGAAGATCTGCTTTGTGTGGAGCCTTCCAGTCTGTTCTCCTGTTTAGTTCTACTCTGTCTCAGTCTGCACTGACAACTTTCTGAGCTGCCTCTCCGCAATCTCCATCATCATGGCAGTGGTTGTGGGTTCTGCTCCATGGGTAGCCCCAATGGCTCAGGTACTACTGGCAATCACCCTGGCAGTACCAGCCCTGGGAGGGTGCCCATCTGCCTGCCGGTGCTCCTTCGCCATGCTGCAGTGCCTGGAGCCCAATGGCATTGCCACTATACCCGCGTTGGCACTACAGGAGAGCGAGAACGTCACGGAAATTTACATCGAAAATCAAGCCGACCTGGAGAACATCACAGAAGTAGACCTTGCCAATTATAGAGAGTTGAAGAATCTCACGGTCACGTTCTGCAGGCTGGCGTACATCTCGGCGAATGCTTTCCAACACAACCTCAAGCTCCAAAATGTAAACCTGGCATCTAACTCCCTGGAGCATATCAGTTGGAAGGTGTTCCATTTTCTTCCCCTGCTCAACCTGGTTTTGAGGGACAACCCCCTTGAATGCTCCTGTGATATCCATTGGCTGCAGCAATGGCAGCTTAACGACCACAGTGACCTCGACAACCAACCGCTACAATGCTTCTCAAATGGCCATGCCCTACAGTTAGACTCCTTAGAGATGGAGAATTGCACTGTACCGGATGTCGCCATTGTCCATGCCAACACCAAGGTCCAGGAGGGAGGCAACCTGACATTTGTGTGTCAGGTGACAGGAGTGCCCATGCCTGTAGTGAGGTGGCGCACGAATAAACTGCTGTCTCGCTATACTGTACAGGAGAGGTTCTGGGGCTCCACTTTGGAGCTGGAGTTGCAGCTGTGGAATATGTCCTCAGAAGACAACCTGCACAACTTGACCTGTGAGGCAGAGAACCGGGCAGGGCCTGGGGAAGAGAAAGTGACGTTGGACATTGAATTTCCATCCAAAATCATATTCCTGCACAACGCTGAGCAACAGCACCACTGGTGTTTCCCCTTTAAGGTGGATGGGAACCCTGAGCCAACCATCCGCTGGCTTTTCAACGGCTCCAACCTGACCGAGGGCCTTTACACCTACACACAGTTCATTCCCGACTCGGACGACGGCTCTGTGAAGCACGGTTGTCTATTTCTCAACAAGCCCACCCACCTGAACAACGGCCTCTACACCATCATCGTGGGGAACAGACTGGGCGTGGACCAAGCCACGGCCACAGGGATGTTCATGGACAACCCCTTTGACCCCTTTGATCCTGAGGGCATCATCCCAGTCCTTGAAGAAAGTGATCCACTTCCCACCAACAAATCTAATGAGGATGTCACTGAGAACACGGAGAGCAGAGTGTTTGGGGTGTCAGTGGCAGTGGGTTTGGCTGTGTTTGCTTGCGCCTTCCTCCTTATTATGGTACTGGTCATCAACAAGTGCGGCCAGCAGTCCAAGTTTGGTATTCACCgttcatctgtCTTGGGAACAGAGGATGATCTTGCTGTGTCACTGCGTTTCATGAACTTTGGGACCAGCCCTCCTTCCTCTGACGACTCTGGCATGTCCAGCTTTGTGGAGAACCCCCAGTACTTCTGTGGCATCTTCAAAGACAAAGACATGTGTGTGCAACACATCAAAAGACAGGATGTAGTTCTGAAGTGGGAATTGGGTGAGGGGGCGTTTGGCAAAGTCTACCTGGCAGAGTGTGCCAACCTCAGTCCGGACAGTGACAAAATGCTGGTGGCCATCAAGACTCTGAAGGATGCCAATGAGTCGACCCGGCAGGACTTCCAGAGAGAGGCTGAGCTGCTCACAGTGCTCCAGCACCAGAACATTGTTCGCTTCTATGGAGTGTGTACAGACGGAGAGCCACTGGCGATGGTGTTTGAATACATGAGACATGGAGACCTCAACCGCTTCCTCAGGGCGCACGGTCCAGATGCCCATATCCTGGAGGAGGTGAAGATGCCCCCGTTGGGCCAGCTCACTCTTCCCCAGATGCTGCACATCGCCGCCCAGATCGCTTCAGGCATGGTCTACCTGGCCTCCCTTCACTTCGTGCACCGGGACCTGGCCACACGAAACTGCCTGGTGGGAGATATGGGAGAGGGTCTGATGGTCAAGATAGGAGACTTTGGCATGTCCCGGGACATCTACAGCACAGACTACTACAGGGTGGGTGGGCGTACGATGCTTCCTATTCGCTGGATGCCTCCGGAGAGCATCATGTACAGGAAGTTCACCACGGAGAGTGATATCTGGAGCTTTGGAGTGGTCCTCTGGGAGATCTTCACCTATGGGAAACAGCCCTGGTACCAGCTCTCCAACAGTGAGGCTATCGAGTGCATTACACAGGGCCGGGAGCTGGAGAGACCACGCACTTGCCCCAAAGAGGTGCACGGCCTGATGCAGGGCTGCTGGCAAAGGGAGCCCCAGCAGAGGCTGGTCATCAAGGACATCCACAGCCGCCTCCTTGCCCTTGTCAAGAGCCCCCCTATCTACCTGGACATCCTGGGGTAGAGGTTGGGAGGTCTGGCGCTGGGGCAGTGTCCAGGCAAGGGGAAGTAGGGGAACTTACGGTCAGGGATGACGGGTATTGGGAAGGGGTGGGAGTTAGGTAAAGGACTGTGCGATGGCAATCCTGAACTTAAGCATTGCCGTCATTTACCTCTATTGGTCTTAAACACACCGACACCCCCTCTGATTGGATATTTGCTCAGGCCAGACTTAGCAAGGATCTGATCGGTACCATTGGGTTGGGAagggagtagggtgaagttgctcCTAGATGCTGATATTGGGTATTTTTGGGCCACTAATGGTTACAGATCggagtgggggaggggaagctgatcccagatctgtgcctcagaGAAACTTTACCCTGAAGCGACGGGAAGACTATGAAGATGGGGGTTACTTCCTACTTCCCGGTCACTGTTTTTTAACCCTAAAGCTGGACATACTGTACGGACACTGGCAACATCCATGCTGCTTCAGCTTTGCCTACTACCCCAGCTCGCCTCGTCTCATGACGACCCAGCCCCAACTCTGTGTGCCGCTGACTGGGAGCGGGAGGAAAAGAACGAGCCAGCGAAGATCTATCAAGTGTTTACTGTGAGTGAGTGTTTTATTGTGTGACTGAACGGGTGTTGTCCTGATGAAGGGTTTTGCATGATTGGAGGAATGCagactatacagtgcctttgggaatgtattcacaccccttgacttcttccacattttgttacattacagttttattctaaaattgatgaaatcgttttccccctcatcaatctacacacaat

Function

NR:

description
high affinity nerve growth factor receptor-like isoform X2

GO: NA

KEGG:

id description
K03176 NTRK1, TRKA; neurotrophic tyrosine kinase receptor type 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559622.2 False 3464 mRNA 0.53 17 33434698 33460997
XM_021559629.2 True 3458 mRNA 0.53 17 33434698 33460997

Neighbor

gene id symbol gene type direction distance location
LOC110487688 LOC106605287 coding upstream 26179 33406809 ~ 33408519 (+)
LOC110487649 LOC106581815 coding upstream 112864 33316290 ~ 33321834 (+)
LOC110487588 NA coding upstream 274636 33130317 ~ 33160062 (+)
tmem176l.1 m4a8a coding upstream 385410 33045832 ~ 33049288 (+)
LOC110487536 NA coding upstream 388977 33028873 ~ 33045721 (+)
LOC118939517 NA coding downstream 70593 33531590 ~ 33540695 (+)
LOC110487797 LOC106605278 coding downstream 207146 33668143 ~ 33694941 (+)
LOC110487856 LOC106581981 coding downstream 258836 33719833 ~ 33726238 (+)
tap1 tap1 coding downstream 272447 33733444 ~ 33746441 (+)
LOC110487876 NA coding downstream 288650 33749647 ~ 33758792 (+)
G133551 NA non-coding upstream 71792 33359978 ~ 33362906 (+)
G133552 NA non-coding upstream 74980 33359158 ~ 33359718 (+)
G133567 LOC106605290 non-coding upstream 105564 33327043 ~ 33329134 (+)
G133566 NA non-coding upstream 108349 33326029 ~ 33326349 (+)
G133565 NA non-coding upstream 109343 33325140 ~ 33325355 (+)
G133648 LOC106605285 non-coding downstream 5733 33466730 ~ 33471416 (+)
G133655 NA non-coding downstream 21286 33482283 ~ 33482552 (+)
G133670 NA non-coding downstream 43147 33504144 ~ 33504466 (+)
G133676 NA non-coding downstream 48548 33509545 ~ 33509807 (+)
G133677 NA non-coding downstream 51315 33512312 ~ 33512793 (+)
G133473 LOC106605294 other upstream 265320 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 1547126 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 2068376 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 2141664 31262054 ~ 31294577 (+)
G131517 ccne2 other upstream 2684744 30748055 ~ 30749954 (+)
G133663 LOC106605282 other downstream 35457 33496454 ~ 33497285 (+)
G133760 LOC106605274 other downstream 353036 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 501420 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 1226958 34687955 ~ 34692286 (+)
G135916 NA other downstream 1510643 34971640 ~ 34971931 (+)

Expression


Co-expression Network