LOC110487724 (LOC106605285)


Basic Information

Item Value
gene id LOC110487724
gene name LOC106605285
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33466723 ~ 33476821 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559638.2
cCAGCGGTGGTGGGGGCTGGGCCCAGGGCTGGGGCCAAGCCTGGGGTTGGGACCGCTGTATGCAATGGGAACCAGGGCCTGGAGAGGGGGCCCAGGCCCCAGCGTTTGACTGCCCAGTCTGGTGTGTCCTCTGCCGGGGATGCAGGGCCAGGCTCAGGGAGGCctgccagagagggaggggggccaTCAGACTGCCCACAGACATGCTTAGCATCAAACTCCCCCAGCTCTTCGACATCCACCAAGTCCCCAAGGTGTTCCGAGAGGATGGCATCATCTCGGGATACCGTCACCCCCAAAGCTCCGCCCTGGACTGCATCCTTAGCAGCTTCCAGATGACCAATGAGACAGTCAACATCTGGACCCACTTCCTGCCCACATGGTACTTCCTGTGGCGCTTCAGCGTCCTGTGCTCCACACTGAACTTCCTGTCGGAGAGCTACACCTGGCCGCTGCTGGTGTACATGCTGCTGATCTGTGTGTACCCATTCACCTCCAGCTGTGCCCACACCTTCAGCACCATGTCCCCCGAGGCACGCCACATCTGCTACTTCTTTGACTACGGCGCCCTCAGCCTCTACAGCCTGGgTTGTGCCATAACGTATGGCTCCTATGTGATGCCTGACTGCTGGGTCAACAGCTGGCTGCACCAACACTTTGTGCCCATCGCCATCTGCAACACACTATTCTGCACCAGCCTGTCCTGCTATTCTAGaTTCCTGGAGATGCAGTTTCCTCATCGCAGTAAAGTTCTCCGGACAGGGGCATTTGTCTTTCCATTCATCTTTGACAACATCCCTCTATTTTACAGActgctgctgtgctgtgggggcagcTGCTGTCACAGTGAGGCCCTGCCCAGTCACTGTTACCACCTCCTCTTCGCCTTCCTCACCTGCTTCCTGTTTGCCTCACACCTCCCAGAGAGGCTGGCCCCGGGGCGCTTCGACTACTTCGgccACAGTCACCAGCTTTTCCACATCTGTGCCGTGGTGGGTACCCACTTCCAGATGGAGGCGGTGCTAGCAGATATGACCTCACGCAGGGCGTGGCTCATTGCGCAGGCGGCCGTACCCTCCTTCCTGAGTACCCTGGGGGCACTGGCCCTCAGCATCATCCTCAACCTAGGCATCATTGGCATCTTCAGTGCCCCTCTGCTGTGGAACCCCCACCACAGTGCCAACCACCCACTGACACCACCCGCGAAACGCAAGCAACAGTGATACTCCCCACAACCAGTGACCAACTAGTATGTTCAAATGTAAAGGGTTGGCTAAACCATTATCCCAGTCGTGAACTTTGGAAATAATAACGATAAGAAGTTGTATTCTACCTTTTAACACCAGTTAGTATTTGTATAAACCCATTGGATTATTATCACAGGATGGTTTTTTCTACATGTTATTCTATCGTCATTATAAGGTTTGTTTAGGAGTTTATTAATGTGTTCACTGTTTGAAGCCGAATACCCAGCTATTTTTATGAAGACTTTCAGTTATTCAGTATCATTGTTTACTGTTTAAAGTTGTGGAAGTATTTCGAGTTAAAGTATCATATGCCGACTTCTTTTCACGTATACTTGAAAGGATCTGGGTTGTATGAAGCATATGTGATGTCTAACAACACATAAAAGTGCCTTCTTTTATATATAGTTACCCAAATGTTACCTAAGTAGTCGTAACATTATTTCTGGTTTGTGTACATCTCAAACTGGAAAAATCTTTAACTCTAAATTTGCAGGGAATTTTCATATTAATATATAAGTATTTAGCTACTGTTTTTCAATTGTCCTATATATTTGTAAGCCATTATTAGAACATCTCAAAGCCCATATTTAATATGAAGTATGACTATCCATTACATGATTCTCATCACTAACTGGCCTACTTACTATGATTCCACCATTTTGTTTTAATATTCAATACCATCTCATTTAAATCTCCACTATGACTTGAATAAATGTACAGACCAGTGTAGTGCTCTCTCAGATTAACCTTCTCTAAACGTctacactctcagaaaaaaaagtgctatctagaacctaaaagggttctttggctgtcccccgtaggagaacccttaaaataacccttttttggttccaggtagaacccttttgagttccttgtagaaccctttccacagaaggTTCGACATGGAACCCAAAACATTTCTATCTGtaaccaaaaaggttctacctggaaccaaaaaggttttccctatggggacagccaaagaacccttttgaaacccttttttctaagcgtGTACCTGAAAGCTACAGCACTGTACCATGTCTATGATTAAAAGACAGGTGCCATTTTACAGAGGTACGTTTCCATGGAAACTCCATGGTTCTTTGCAGTTTGTGTTCCTGTGAATGCTCAGTCACTTTAATTGTTCTTTGGAGTACTCTTAGTTGTTACATCTACAACATACATTAATGGTCATTGGATACATTTTTTGAAACACTACGTGTTGTTTAAATGTCAGGGAATTACTGAAATTCTCCCTAAAACATACCCATCATTGTAACATCGATAGGACATACCAAATGATCTTGTTTATAACAGCTATCTGATGGAAGAAATATTAGATGATGCACAACAGAACTGAATGAGTGTTGTCTCCTCATCTCCCAGGCATGTGGATGTGGTCAGTGGAGGTCAAAGGGTCTTGGCACTGTCGTATTCATGTGGTATCGTGGTGGTCATTGCAGGTTTATGGCAAACCAATACACCACTCACCCCATGCTGATATAACGTTGTCAGTGGCTATTGTTTACATGTATCCTTGAAAAAGAGTGTGGTATCTCTTGAGTATTTCATCcttgtagtatatatatatatatataacagcacTTACTGTTTCTGTTCAGTTGTAAAGCGTAGTGaatatgtacaggtaactgccaaaataaagaaaacctcaACATAAAGtatcttaatagggtgttgggccatcACGAACCAGAACAGCTTCTATGCCTTGGCATAGGTTCaccaagtgtctggaactctgttggagggatgcgacaccattcttccacgagaaattccataatttggtgtttagTTGAAGGGGTGGAAAAGGCTGTCTCAGGTGCCGCTCCAGATTCTCCCAtgagtgttcaattgggtttaaATGTGGTGACGGAGAGACACACACCCTttaagacccctctttcaaagtctctgagatctcttctagccatggtagccaaaataatgggcaatagggcatttttatacatgaccctaagcatgatgggatattaattgcttaattaactcaggaaccacacctgtgtggaagcacatgctttcaatatactttgtatccctcatttactgaagtgtttcctttattttgggcATTACCTGTATATTTGCATGATTATTTTTGTAAATGTTATAGATGAGGAAAAATTATTAATTACATCCCCAACATCATGTGATCATTTCTTGACATAATAGCCCTTACCATGTACCACACTAGACCTAACACACACGTCATTATTTGATCATGTAGCTCTGTATTCAGTGTGTAGGGGAGACCAGGGTTGATTGTCACAGTGCTTATAACTCCCAAACTAGAGGGTGCTGTGTAATACTTTTAAGATTAAAATGTGTGAATTCTTCAAAAGAACTAATCCACCTGGTCGATTCATgtcatcataacaaaacatttagGTGAgggtattttttaaattttaattttaatttataggcaaaactttttttttcatccagtatttttttttcatttttcatccaaaaatgaatgtTTGCATTATGGGGgtatacatgtaaaaaaaatatatatatattatagggAGAGCTACATTCCATACTTATTTCTGAGTTCCTAGGTCAAGCCATGTGGTAGCATGTAGCATCTTAATTAGCATTGGGATCTTTTGCTGTAAACCTTCCTTCCCGGAAGATCAAAATGTGTTGGGAATAATATATGTACGGTGGAAAGCGTTAGCACATTGGGAAGATGTCGCCGAGACATCAGAATAGAGTCTTGATGCCTGGCCGACATATATactatgtagaactgtagaaTTTAGAATGGAGATATTCTAAAACCATCTGTGAGACGTCTTGCCAATTAGCAAACAATGTCTAAAACGGCATCTTCCCGATTCATCATTCATCCATTGTCCAGAGGTTTCTCTGCTATCTGGGTTTGTTGCCTTTCTCTCCCAAACATattttctctgtcacacaccGACAAATGTACACATGTGTGTGcaacacacgcgcacacaaatTGACTCAAAATGTCATATGTTACCATGCATTTTGTTAGGAATATCATTTGATAAAAGAAAGGCTATTTCTAAGACGCTGTGAACCATATTGCTTAATTTCCTTTTACTAAAGGAATAAACTAATAGCTAAcattgtgacaaccaaccccatcagtggaggctgcctAGAGGAGAACGGCGCATACTAATGGCTGAAACAGAGTGACAACCCTGCGATGGGGCTGGTTGTCACAAGTGGGCAGAGTGTGTTTGATGGCTTATTACTCCATGTTGGAATAAAACATACTAGTAGGATCCCTATTTCAACCCAAGACCTTGGTCTTTCTGTTAATGTTGAAAAGAGTCttgttatatatacacaccagAGTAAAACGTGTGACAACCAACCCAAGTCTCCCCTAAAGCCTTGGGTGGTTATGAGGGAATAGAAAGTGATATTGTGTCAGTGAGGGAAATGGACTGTGTTGCAGGTTGAGCAGAGTGTACAGGCAGTATaggcaaacacacatacacacatagacacacttcaTTTTACTCCAACGAGAGCCCTATTGTTTGAAACACAATTTTTGTTTTGAGGGTTAGTGTATTGAACACAGAGAGACCCATGTAGTTGCCCTTTTCATCATCATTATACCACTCAGTTTTACACTATTGATTTTGGTATGGTGCTTTCATCGTCTTACAACTTGTGTCTTGGAAGTGGGTTGTGACTAGCGTGTGGCCGACCATATCGACCACAACTGTATCTGAATTGACATATTGTAGTGCTGATATACCTGCAGTTGGCGCATATAACCGATTGTCCTTTAAGTTGTTGAATATTTGAATGTTCAACTACATTTCTAAACATTCTGTTATGCTTTTGTCATTGAAATCTACTTTCGTTCAAACTAGATTATCGCTGGGAAAAAAACAGTGATGAAAAATTAGTTCAAATGCATCTGTTTGTTTACTTCGATCACTTTCATGAAGCTATGAGGATTCCCAAAGTGTGTTCATATTGAATGGCATGTTACAGTAAGTAAAATAGGAAGCTATGCAAAGATTTGGTTGGATGACACAACAAACTACACACCAAGGAACTTCCAGTGACTCCTGAAGAGTGCTAGGTTTTAGGAAAGAGGGAAGAAGCGGTTTGAATGAATGTCTGTGCCTATTTTCCTTTCATACTACCTTTAATTaaacgtttatttttatttagcatATACGCTGTGTTTTGTGTGGAGAACATAATATAGTTCCTGGGTAAAAAACTGAAGAGAAAAATAATGTCATTGTTTGCTATCTTGTTACTAAAATTGTGTCAATGCTGCCTTATTGGAGTGTATTCATCACTGGAATAATTTCTCTAATAAAAATGACTTACCACATA

Function

NR:

description
progestin and adipoQ receptor family member 6-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559638.2 True 5654 mRNA 0.42 7 33466723 33476821

Neighbor

gene id symbol gene type direction distance location
LOC110487699 NA coding downstream 52772 33408916 ~ 33413968 (-)
rbm8a rbm8a coding downstream 62209 33400775 ~ 33404514 (-)
LOC110487659 LOC106605289 coding downstream 74913 33359159 ~ 33391810 (-)
LOC110534759 LOC106605290 coding downstream 109266 33327012 ~ 33357457 (-)
sv2a LOC106605292 coding downstream 152820 33256474 ~ 33313903 (-)
smg5 LOC106605282 coding upstream 12587 33489408 ~ 33503810 (-)
syngap1b LOC106605281 coding upstream 46214 33523035 ~ 33590990 (-)
LOC110487763 LOC106605281 coding upstream 134035 33610856 ~ 33644021 (-)
LOC110487773 LOC106605251 coding upstream 171302 33648123 ~ 33662621 (-)
LOC110487810 LOC106605280 coding upstream 218196 33695017 ~ 33704797 (-)
G134456 NA non-coding downstream 32133 33433704 ~ 33434590 (-)
G134385 NA non-coding downstream 173036 33292844 ~ 33293687 (-)
G134379 NA non-coding downstream 179462 33286739 ~ 33287261 (-)
G134483 NA non-coding upstream 10973 33487794 ~ 33488007 (-)
G134484 NA non-coding upstream 11806 33488627 ~ 33488924 (-)
G134490 NA non-coding upstream 28022 33504843 ~ 33505093 (-)
G134562 NA non-coding upstream 248700 33725521 ~ 33758779 (-)
LOC110487618 LOC100380645 other downstream 241621 33208500 ~ 33225125 (-)
G134102 NA other downstream 678602 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 715145 32738829 ~ 32756992 (-)
LOC110486999 prdm1 other downstream 1817928 31631886 ~ 31648795 (-)
G132197 NA other downstream 1923714 31536047 ~ 31543009 (-)
G134668 NA other upstream 388667 33865488 ~ 33865937 (-)
G135575 NA other upstream 1127394 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 1829546 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 2197477 35674291 ~ 35700846 (-)
G137479 NA other upstream 2893183 36370004 ~ 36370328 (-)

Expression


Co-expression Network