smg5 (LOC106605282)


Basic Information

Item Value
gene id smg5
gene name LOC106605282
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33489408 ~ 33503810 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559653.2
TTCATGACAGTCTTCATCAATAATCATTGGTTACCCGGTTATTGTGCCATGCAACCCTAATAACCCAAAAATATATACAAACGTTTTACATTGCCAGGGATCGCAAACAAACAAATTAATCATAATGACTCTGGCTGTCTGGCAATGTAGCTAGGTTTCCACTAGGTTCTACAgccacaaataaaaataaaaaaatgttttgctattGGTCTTAATTCAAGGTTAGACATAAGGCTATCAGTGTGGTAAAGGTTAAGGTAAAGTCTTATTTTAATTAAGGGAAATTGTAGAATTAGCAACTAGTGCCGGTCCCGCGCGGAAGCAGGTCTAACATTTCACGCGAAGTCTCGCGCTGTTCTGGCGGTCGCTGTTTAATGGCTGTCCTCTTACTCGTAGCGATGTTTCGAACGGGGAAAAACACAAGGAAACAATCGGGGTGTGATAACTGACCGGGAATTAACACAAACACTGGGGCATTCCCTCTCCTAAACGGTTTCCGAACGGATGGACAGTTTGGCAAGCGACATAAGATACGAAAGCGACGTAGTGGTTAGCGGGAGAGGATAGagctgctaacgttagctagtcaaCACAGTTGTCACTGCCGGTGAGGCAAGCCCGGAGCAACCCTGACAAGAGTGGGGTTGAAGAGGGTGGGTGGGAACGCAGACTCTGTTGGACTGGAGCGTGTGACTCTTGGCACCAGATGCTAACATGAGTGGACCTGGGCAGGATAGCGAGCCAGAGGCAAAAGTCCTCCTCATCAAGCGGCTATACAGGGCAGTGGTTGAGTCGGTACACAAGCTGGATGTCATCATTGGCAGCAAGTCATCGTACAGGGAGGTCTTCAAGCCTGAAAACATCAGCCTTCGCaacaaGTTGAGGGAGCTGTGTGTGAAGCTGATGTTTCTCCACCCTGTGGACTATGGTCGCAAGGCTGAGGAGCTTCTGTGGAGGAAGGTCTACTACGAGGTCATCCAGGTCATCAAGACCCACAAGAAGCACATCCACAGTCGCAGTGCCCTGGAGTGTGCCTACAGGACTCACCTGATAGCCGGCGTGGGCTTCTATCAGCACCTGCTGCTCTACATCCAGTCCCACTACCAGCTGGAAATGCAGGACTGCATCGACTGGACCCATGTCACCGACCCCCTCATCGGTCGGAAGAAGCCGGTATCAGCCACCCCTAAGGAGATGGAGTGGGCCCAAATGGCCTGCCATCGCTGCCTGGTGTACCTGGGAGATCTCGCCCGTTACCAGAACGAGTTGGCTGGGGTGGAGGCTGAGCAGCTGTCAGAGCGGTTCTACCACCAGGCCCTGTCAGTCACTCCGCACGTAGGAATGCCTTTCAATCAGTTAGGTACACTGGCGGGGAGTAAATTCTACAACGTGGAGGCCACCTATTACTACCTACGCTGTATACAGTCGGAGACTCCCTTCGAGGGGGCCTATGGGAATTTGAAGCGTCTGTTTGATAAAGCTGCTAAGATGTACCACCAGGTGAAGAAACAGGAGATGAAGAAGCTGTCTCCCTCACGGCAAAGATCCAAGGACATCAAGCAACTTCTGGTGAGCTTCATGTACCTACAGAGTCTACTGCAGCCCAAGAACAGTCTGCTAGAGACAGAGCTGACCTCTCTGTGTCAGTCGGTGCTGGAGGATTTTAACCTGGTGCTGTTCTACCTGCCCTCGCCGCCACATGGCCACGAGGCCACTTCCCCCAGCGAGGAGGAGCTTGAGGAGCACGACTCGCCCTGCGCCCTGCTCCCCGACGCCCTCATCTTCAAGATGGTGGTCACCTGCCTCATGGTGGTGCACAGCCTGAAGCGGGGAGGGTCCAAGCAGTACAGTGCGTCAATAGCCTTCACGCTGGCCCTCTTCTCCCACCTGGTGAACCATGTCAACATCCGTCTGCAGGCTGAgctggaggagggggagagcCAGGTGCCCCCACTGCAGACTGACAACACAGACGACTCTGAGTTGAGAGACCCGTCTGACTCGTTGACATCGGAGGAGAGGCCCCTGCAGAACGGCTCCCTGGACCATGAGGAGGACGAGGGGGGCCACCGGAGCACTTTGGCCCAGAAAGCAGGCGTCGGTGAGCGGAAGgcggaggaggagaaacagaagcaAAAGAAGTACGCCCGCCTCTCCATGCTGCGCCGCCGCCGCGCCACCTGCAAAGAAGACGAGAGCGACCTGAGCGAGGGCTTTGAGAGtgatgaagaggaagaagagCAGAGGGGCTGCGACGACTCTGGGGGTGCCTCGTCGGGACCCCCACTCACCCCCGCCATGCTGgagaaggagagcaagagagggagggagcacccGACAGAGGGGACCTGGGAGAGCGGCTCGGAGGAAGACGAGGAGGGCGGCACGGCCTTCGATGTGGAGACTGACTCGGACATGAACAGCCAGGAGTCACGCTCCGACCTGGAGGATATAGAGGACTCAGAAACCCCGGAGAACTTGGACACCACTACTCGGGGGGAGCTGCAGCCTGGAGAAGACGATGAAGAGCAAGCCAATTCCAGGGAGGACGGCGACGGGGACACCCCTCCAACCACCAATGGCCCCCTCCTGCACAGCGACCCCAGTATCAGCAGTAACCTCCAGGCCATGTCATCCCAGCTGTTCCAGGCCAAGCGCTGCTTCCGCCTAGCGCCCACCTTCAGCAACGTGCTGCTGAGGCCCCACAGCTCCTCCACCAACCCCACCCCCACCGACCCGGatgcctcctccaccaccccctccCAGGAGACGCCGCCTCCCCCGGGGGACTCACCCTGCGACGCTGGCCCGGGCACTGCCAACGGAACCAACGACAATGAGGTGGATTCCGATTCAGAGTGTAGCGTGCACAGCAACCAATCAGTACACAGCGAGAAGACCCTGTCAGAGAGACTGGAGATTCTGACCAATCAGGGGCTCATCCAGGTGGTCAAGGTGTTTGTGGATTGGCTGAGAACCAACACTGACATTATCGTCATGTGTGCACAGAGTTCTCAGAGCCTATGGAACAGACTGTCTGTGCTACTCAACCTGCTGCCTGACGGGAACAAGATGCTGGAAGCAGAGCTGGGTTTGAACACTGAGGTGACGGAGctgctgagtgtgtgtgagcAGCCTGGCCTggtccagtccctgctgctgcctGAGGACCTGGCCCTGCGACACCTACCCGCCCTCAACCTGGCCCACCGCCGCCTCGACTACACCCGCCCCAGACCTTCCCTCAGCCCCGTACAGGAGtGTGTGGTGCGCGTGTGCTGCATCCGCAGCTTTGGCCACTTCCTCACTAATCTCCAATGCAATGTGCTGCACTTCAACCCGGAGGCGGGCATCTTCACCAGCATCACCCAATCGGAGCAGGAAAACCTGGTGCAGCAGGCCAAGGCCCAGATCCGCATGGCAGAGGAGGAGGCTCGACGAAATCGCTTGATGAGAGACATGGCTCAGCTCCGACTACAGTTGGAGGTGTCTCAGCTAGAGGGCAGTCTGCAACAGCCCAAGACCCAGTCATCCATGTCTCCGTACCTGGTACCCGACTCTGCCGCCCTGTGCCAGCACCTCAACCTCCTCAGACATCTGGCTGGCAGTGGCtgcttcatcatcatcattcccCGCACAGTGATTGATGGCCTTGACCACCTGAAGAAGGAGAATGCCGGAGCGAGAGACGGTATCCGCTTCCTGGAGTCTGAGTTCCGTAAAGGCAACAGGTACATACGTTGCCAGAAGGAGTCAGGGCGGAGTTTTGAGAGGGACAAACTGAAACGCCAGGACATGGAAGCCTGGCATCTATACAAGACGGTGGACAGCTGTCGTCAGCTGACCGTCTCCCAGAGCAACGGAGACGAAGACACAGCTGGCATGGTCACTATTCTCACCGGTCACTCAGTGGAGGATCTGTGTACCCGCTCTGTACCCATGAAGTCGGCCGTCCAGGCAGTGGCAACAGCAGGCATGGAGCTGAAGAACATTGTGGAGTTTTACCGTCAGTGGAAGGAGATTGGCTGAGAGCTTCGGGGGCGAGGTCGGCACGGCGGACAGCTGATCacacactcactccctctctctctcccactctgttgctctgtctgtatctgcGTCTCCAAGGAAAATCAACTCTCGGAAAGAAAGAAGGGGGATGTAAAACAGTTGAAGGAAAGAAAAGGCGAGACACATGGGCAAAGGGGGCAATAAGAAACAGCAGAAGACCCCCAAACATAAAGAAGTGATCCCAAAGGTCGGGGTGAGAATTAAGTGGGGACGCTACGCACTTAAAGTGACCCTGGTTCACATCATAACCAGGCATATACTGTATACGATAGAAATGAGTACATTACGTGTCGAGAGAGAACCACTCATACACATTCACGCTCAGTTAAATCCATTGGTTTAGATGTGTAGAGCAGTGTTTCCAGTTTCCTCCTTTCCCTCTATTTGTGTTGTGAAGGTGGGACTATGTCAGCCCTATGGCTGGCTGGGTCTGGTCTGCTAAGGCAGGGGGGTGTGGAGTAAATCCCAAAGAGAGAACACATCTCTAGCGTGCCAAGCGATGAGCCTCTCGACACATCGGAGTCTTGGAGCTCGAGGGTTACAAACAGGGGTTCAGGTCAATGGACGTACACTTCTCCAGGATTTGTTTCTTTCCTATCAGTTTTTTTGCGGTGTACTTTTTGTGTCCAGTGACTAATGTATTGTTATCTGTGTATGAGGAGGAATAATAATGACGGTTTATGCCCTGCTATTGTTTTAATTAGGATTTTATTTTTGTACCCAAATATActttattttgtgtttttgtaAGATGTGCTGAATACACACAGGAATGAAATGCAGGGGGAGGGATGGGGTTGTCTTATATTGTTTCCCTAAACCTGTCTGGTAATCCTTTCGTTCTCAAGGAAATAGTCCTGACTTCTGTGTCATGGTGCCATTTTAGGAAGAGGTAGACTCGGGTGGGTTTGTGCTGTTGCTAGATGTTAAGGAGAGCGGGGCCTGCGGTTGTCCCAATATGGCGGTGCCAGGTGTTTGTTTTGACCCCTGTGAACTCCTGATATATCCCATCTACCATCATCACTAAATGTTCCATCATGCACAGTGCAAAGGAACTCGGTAATTGTGTGGCCACGCATTGAACAATAAAATGAACTCATTTTAAAA

Function

NR:

description
protein SMG5-like

GO: NA

KEGG:

id description
K11125 SMG5, EST1B; protein SMG5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559653.2 True 5178 mRNA 0.54 22 33489408 33503810

Neighbor

gene id symbol gene type direction distance location
LOC110487724 LOC106605285 coding downstream 12587 33466723 ~ 33476821 (-)
LOC110487699 NA coding downstream 75457 33408916 ~ 33413968 (-)
rbm8a rbm8a coding downstream 84894 33400775 ~ 33404514 (-)
LOC110487659 LOC106605289 coding downstream 97598 33359159 ~ 33391810 (-)
LOC110534759 LOC106605290 coding downstream 131951 33327012 ~ 33357457 (-)
syngap1b LOC106605281 coding upstream 19225 33523035 ~ 33590990 (-)
LOC110487763 LOC106605281 coding upstream 107046 33610856 ~ 33644021 (-)
LOC110487773 LOC106605251 coding upstream 144313 33648123 ~ 33662621 (-)
LOC110487810 LOC106605280 coding upstream 191207 33695017 ~ 33704797 (-)
LOC110487821 LOC106605277 coding upstream 208455 33712265 ~ 33715647 (-)
G134484 NA non-coding downstream 484 33488627 ~ 33488924 (-)
G134483 NA non-coding downstream 1401 33487794 ~ 33488007 (-)
G134456 NA non-coding downstream 54818 33433704 ~ 33434590 (-)
G134490 NA non-coding upstream 1033 33504843 ~ 33505093 (-)
G134562 NA non-coding upstream 221711 33725521 ~ 33758779 (-)
G134557 tap1 non-coding upstream 239142 33742952 ~ 33746685 (-)
G134619 NA non-coding upstream 285016 33788826 ~ 33789204 (-)
LOC110487618 LOC100380645 other downstream 264306 33208500 ~ 33225125 (-)
G134102 NA other downstream 701287 32748208 ~ 32788121 (-)
LOC110514821 NA other downstream 737830 32738829 ~ 32756992 (-)
LOC110486999 prdm1 other downstream 1840613 31631886 ~ 31648795 (-)
G132197 NA other downstream 1946399 31536047 ~ 31543009 (-)
G134668 NA other upstream 361678 33865488 ~ 33865937 (-)
G135575 NA other upstream 1100405 34604215 ~ 34604478 (-)
G136399 psmc4 other upstream 1802557 35306367 ~ 35307729 (-)
drd2l LOC106582624 other upstream 2170488 35674291 ~ 35700846 (-)
G137479 NA other upstream 2866194 36370004 ~ 36370328 (-)

Expression


Co-expression Network