LOC118939517



Basic Information


Item Value
gene id LOC118939517
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33531590 ~ 33540695 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XR_005036461.1
AATTGTGCAATGTTAAGTGCATTGTTAGTATGCTTTGGTACGCAATTCTCAAATGTTCTTACTCAGCAACATGAATAGGAAATTAATTCTCGTTTTCTGTTTCAAACTAGGCATATCATTGTGGAAATTAGATGTACAAACCAACCAAATATTCCAGAACAGTAGTATATGACCGACATACATATAAAGGACACTAGACAACTCTCCAAGTATGACCCAGAGCAAAAAGAACAACAATACAGTACTGGCGACACACTTGATCAAACTCACAATGACAATACATGAACATTGGATCAACTTATGTGCTCAGGTGCCATATACATacaggacacatacacacaggaatatataaaCACACTctccaagaaacacacacattgacataTATGCACACCAGTTGTTTATTTTCAGGGAAGGATTGTGTCAGATACGGAGATTTCCCATAATTCCCGTCATTTATTTGGGGGAGTGATGGGAGGGGAGATGAGTCGAATCGAATGGATATGTTGATGACCCACCGTAACGTGTTCCTCCGTacacaaaaggtGAAGGATGAATTAAAAGTCACTGCAATCATGAGGTCAAATCCAAGATGGCGATCAGCTGTTTGGTGATGGAGATTCAATGAACAAGGGTACATATGACATCCTAACTCCTACCTGGTCAATATTTCTGAGTCATACAGAAAAGCTGTGAAAAATTGCTGACAACGTGGATGAACTTCAGTGTTAAACTCCTGAGATGAACAGAATGCTGAGAGAGGACTAATTACACAAAAGGAATGACTCAttttaatacagtgccttcaaaaagtattcacccccctttgactttttcacatttaaaatggattacattgagattgtgtgtcactggctggggttaccccataatgtca

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XR_005036461.1 True 898 mRNA 0.39 3 33531590 33540695
Loading

Neighbor


gene id symbol gene type direction distance location
ntrk1 LOC106605284 coding upstream 70593 33434698 ~ 33460997 (+)
LOC110487688 LOC106605287 coding upstream 123071 33406809 ~ 33408519 (+)
LOC110487649 LOC106581815 coding upstream 209756 33316290 ~ 33321834 (+)
LOC110487588 NA coding upstream 371528 33130317 ~ 33160062 (+)
tmem176l.1 m4a8a coding upstream 482302 33045832 ~ 33049288 (+)
LOC110487797 LOC106605278 coding downstream 127448 33668143 ~ 33694941 (+)
LOC110487856 LOC106581981 coding downstream 179138 33719833 ~ 33726238 (+)
tap1 tap1 coding downstream 192749 33733444 ~ 33746441 (+)
LOC110487876 NA coding downstream 208952 33749647 ~ 33758792 (+)
LOC110487915 LOC106582023 coding downstream 333210 33873905 ~ 33880108 (+)
G133678 NA non-coding upstream 17728 33513333 ~ 33513862 (+)
G133677 NA non-coding upstream 18797 33512312 ~ 33512793 (+)
G133676 NA non-coding upstream 21783 33509545 ~ 33509807 (+)
G133670 NA non-coding upstream 27124 33504144 ~ 33504466 (+)
G133655 NA non-coding upstream 49038 33482283 ~ 33482552 (+)
G133699 NA non-coding downstream 19236 33559931 ~ 33560301 (+)
G133725 NA non-coding downstream 52928 33593623 ~ 33593990 (+)
G133761 LOC106605277 non-coding downstream 93464 33634159 ~ 33715078 (+)
G133781 NA non-coding downstream 136689 33677384 ~ 33680485 (+)
G133785 NA non-coding downstream 199899 33740594 ~ 33742572 (+)
G133663 LOC106605282 other upstream 34305 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 362212 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 1644018 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 2165268 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 2238556 31262054 ~ 31294577 (+)
G133760 LOC106605274 other downstream 273338 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 421722 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 1147260 34687955 ~ 34692286 (+)
G135916 NA other downstream 1430945 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 1431754 34972449 ~ 34972801 (+)

Expression


LOC118939517 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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LOC118939517 Expression in each Bioproject

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LOC118939517 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
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Co-expression Network